rna1531, rna1531 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1531
Unique Name	rna1531
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2497
Alignment location	CM002457.1:874763..876476 +

Link to JBrowse

Properties


Property Name	Value
Product	dna replication complex gins protein psf1
Orig transcript id	gnl\|cribi\|Naga_100007g41.6514.mrna
Orig protein id	gnl\|cribi\|Naga_100007g41.6514
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:874763..876476 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g41	gene1475	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1531	rna1531-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29187.1	cds1528	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:874763..876476+
coding sequence from alignment at CM002457.1:874763..876476+

mRNA sequence

>rna1531 ID=rna1531|Name=rna1531|organism=Nannochloropsis gaditana|type=mRNA|length=2497bp
AATCCACATCCCTTGTCGACATTCTTTCGGATTGACACAGGTGAGAGGCC
CTTCCAAGTACTCTCTGTAACATCGTCATGACTATTTAACGAAACGTGAA
GCAGGTGTGGCGCATGACTGATCACATTTACACATCTATGCGCGTGTACA
ATGACATCCCTCCCTCAAGTCCTCCGCCGTACGGTCCTCTATCAGAAAAT
CTCTCATCTGTCTTGGCATTTTTTCGGAAGCTCATACCCCTTACAATCAG
TATTTTAACGTTACTGAGCAATGTGCTCATTCCTCAACACACTGCAATCA
CACTTATTGGCGCGTCATTATACTATGAAAGGGGAAGAAAATAGGGAACA
AAATTTCAACTATAGCACATTCGTCGCCCCCTCGTGTTCTTCTGGCATCT
ACGCGAAAAAAAGTACTAAATTCATGATAACGTTGTGGTCTCCATACATC
AAATAGAGGGGACGTGTATTTGCCTCTTCGAAAAAGTCCTCTGCTTAAGC
GGTGGCTGCGTGTCCGCTTGTGGCAGCACCCTGCCTCAAACACTTTATCT
CCCAGCTTCAAAAACCCGGACACGAGTATAAAGTGCTTTAAAGCATTGAG
ATGGCGCGCATCGAGGGAGTTTTGCTCAAGAAATCTTACATCTCTTACCG
TCCGCGGTACTTCGAGCTTGATGGATCCAACCTGCTCTACAAGACCTCGA
AAGAAGACGCCAAGGAGCGGAGCCTTATGTCTCTCACAGGAGACAGCCAA
CTAATCGAGTTCAGAGCAAAGCGAGCATTTCAAATTACAACGGGGACCAA
GACCTGGTTTATAAAAATTGCTGATGACGATAAGGATGAAATCCTTTTTA
ATTGGGTCTCAGCAATCCAAGGAGCCATCGCCCACCTCAAACAAGGAACT
CTATCACCCCCCATTGCGCGTTCCCTCGAGCTTAAGCACCACTCCATCGC
TGGCCGTGACTTCGTCATGGATTCCCGGTACACCGAGCTTAAGCAACTGG
GCAGCGGCGCCTATGGCATGGTAGTCTCCGCGTTAGATACTCAGACTGGC
AAAAGAATTGCAATTAAGAAATGTGCAAACCTATTTGTCGACCCAGTCGA
TGCCCGAAAAATCGGTCGTGAGGTCCGTATCATGTCTCAGCTCGCCCATC
CGAACATCATCAAGATCGTGGACGTCCTGCCCCCAACGACCGCGGACTTT
GATGACGTTTACATGGTAGGGGAGCTCATGGACGTGGACCTACACCGTGC
CATCTACTATGGTAGACCCCTATCTCCGGAGCACGTCCAGTTTTTCCTGT
ATCAGATCCTGTGCGGGATAAAATATATCCACTCGGTGGGTATTGTTCAC
AGGGATCTGAAGCCCTCGAACATCTTGGTCAACTCTAATTGTGATTTGAA
AATCACCGACTTCGGACTCGCCCGGCGCATCACAGACCAGACGCGCGACT
TGACGGAATATGTCGTCACCCGCTGGTATCGGGCTCCCGAGGTCATGCTT
TCCTCCTGCCAATATAACAAGAGCGTGGACGTCTGGTCCGCGGGCTGTAT
TTTCGCTGAGATGCTCCAGCGAAAACCCCTTTTCCCGGGAGACAACTATC
GCCACGTCCTCCGTCTTATCACGAAGGTGACTGGCTCTGCCACCGAAGCA
GATTTGTGGTTTGTTAGCAACGCCAATGCCAAAGCTTACATGCTTCAGCG
GCTTCCTACGTATCAACGCATGGATCTCCGCGCTTTATTGCCAAATGCGT
CGGCCGACGCCTGTACTCTGTTATCCAGAATGTTGGAATTTAATTTTGCC
AATCGGATAAGTATAGACGAGGCGCTGGCTCACCCGTACTTTGCTGAGAT
CCGGGATCCGACTTGGGAGATGGAGGCAGGGCCGGACGCTCTGGAATGGG
GGGATATTGATACGGTAGAGCCGACACGTCTGGCGATGCAACGAATTATT
ATGGAGGATGGAGCTCGATTGAATTCTGCGAACCTGAGTATTTTGGAAGA
GATTCAACGGAAATGTCATGGATTGAGTGGCGGGGCAACAACCGGGATGC
GTGCTGCATGATGTTAATGGCCTGGAAATAGGTGGGAAACCGTTCATTAA
GGCGAATGAAATTGAGTACCCGCAGCCGTGATGATTGTGAAAGTATTCTT
TTCGCTTCCAGAAAAGACGTATTACAAAGGGAGAGAAGGCTTTGTGCTGT
GTATGTGCATAGTTGAATGGAAAGGGGATCCTAATCCATCCAGTACTGGT
GACGCAAATTCCATAATCAGGCCTTTGCCAAAAACAAACTCTGAGTGATC
ACAGGATATGTAGATAAAATGAAAAAAAGGAAGACCATTCGAAGTAAGAC
AGCCGGTCGGCTTCTTGTGAATGTACTGAGCCACGTACTCACGTACTCAT
GATGTCCAAACAGCATGAATGGACCTACATCTAAATGTCTCATGAATAGC
AGCTGGCAAAAGAGGTCCGTGTTCTTACTTTACGTCAAGTCCAAGCC

protein sequence of rna1531

>rna1531-protein ID=rna1531-protein|Name=rna1531|organism=Nannochloropsis gaditana|type=polypeptide|length=199bp
MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALAQEM
TEVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPT
RLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVL
ADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHIAPSARQGSS

mRNA from alignment at CM002457.1:874763..876476+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1531 ID=rna1531|Name=rna1531|organism=Nannochloropsis gaditana|type=mRNA|length=1714bp|location=Sequence derived from alignment at CM002457.1:874763..876476+ (Nannochloropsis gaditana)
AAGCGAGCCTCCGACATAGCAGAGCCTGTTAGTATTCTTCACACTATTTA
GCGACGTATGAATTGCCTTTCTGTCAACTTTACCTCTCATGATAGAGACA
GTCAGATGAGAGGCTTGCTTCCGCGTCGAGATGGCCGCTGAGGAGCGCCA
ACGATTATCATCTATTCTTTCCGCATTAACCCCTCAAAACAGACTTAAGC
CCGTCTTCCTTGCGATTCTCATCGACCTACAACGACGCAAGTAATGGACT
TTGGACTCAAGGGACGTGAGCTTTTGCAAGACTTAAAACGAAGTGATTGG
TTGCCTTTGTACAATGAAGATGCCGTGAGCCGCTGCTTGCAAGAGTGTCA
AGGGCATATGGCCCAAATCCGGCCAGCGTTAGCACAAGAGATGGTAAGAG
GTCGAAAGACAACATTGACATGCAGATACTCGTTGAAAATGAAAGCAATA
GTCTCGATGCTCACCTCAGATATCCTGTTGAAAGCTTAATATAATCACCC
CAAAAATGATGAAGTATGATGCATGAGAAACCCATGCTCATACATAGCAC
ACGTGGTGGGACAAATTGTGGGATGCACAACAAGCATGAAGTATTCAGGC
CTATGGTAAACGAGAAGTCCGTGATCATCGCAAAGAGGGTGTGACAAAGA
GTGAGACACAGATCCTTTAGAATATTTGTATCCAAACCCCACTTCATCAA
ATGCCCcatgcatttttttcccatttgATTTCGCATTGTCAAAGACCGAA
GTGCCGCCCGAATACTTAGTAGCGCTCACGGTGCACCTGCAACACATTCT
TCGGAACAAACGATGCTTACTGGCTTACATGCAGGTAAAGACTAATATGG
GGTAAACATGGCTTGACATTTTAGGGCGCAAGCTGTGTCCATTTTGTGCC
ATAGCATGAGGAGGGACGCCTTACTTACACGTAGATATGAAAGCTTGCAC
TGCAAAACAAGGATTAGCAATATTTTCATTTGGCACTTGTGATAAAGAGC
TTCATCCACCACGGCGTTATAACCTCGTTGCTCACACTTGACTTCGAACT
GGTTGCGGGCTCACACACGAACATGCTCCCATCCTGACAGTATCGCCTTG
ACAAGGTTCGGGACCTGCGTTGGGAAACAGGGGGTGCCATCATCCCAACG
CGCTTACAACGGAAGTTATCCGCAAAGGAAAGCGAGTTCTTTGCTTCTTA
CGACAAGATTCTTTCTGACTACATGGGCAACTACCCTTTGCTTGACCTTA
CTGGCTCGACCTTGGTAAGTTTTTGAAAGATATTCGCATGAAAGAAGCGC
TATCTTCAATCTCTTCCCTGAGTCCGTCAATCTGTCCTTCATGCTAAGAG
TTACTCATTtgctgtccttccttccattaCCTGACGACAGCCTCCGAAGG
AAATATGCATTGAAGTTCGCGTGTTGGCCGATTGCGGGGAAATCATGACT
GATCAGGGCCCTGTTAATTTGGAGAGAGGTACAAATCATTTTTTGCGGCG
CGCTGATGTCGAAGGCCTTATTCGACAGGGCTTCCTGCTTCATATAGCCC
CGTCGGCAAGGCAAGGCTCTTCCTGAATAAAACTGTGTTGACAGACCAGT
AAATATCGCCTTCGCGAAGCCTGCAATTGAAAGCTGAAATGTAGATACTG
GAAATTTCGGAAGACAATCATAACAACTACAATAAACGAAAAGATGTAAT
TGGCGCAACAAATG

Coding sequence (CDS) from alignment at CM002457.1:874763..876476+

>rna1531 ID=rna1531|Name=rna1531|organism=Nannochloropsis gaditana|type=CDS|length=2400bp|location=Sequence derived from alignment at CM002457.1:874763..876476+ (Nannochloropsis gaditana)
ATGGACTTTGGACTCAAGGGACGTGAGCTTTTGCAAGACTTAAAACGAAG
TGATTGGTTGCCTTTGTACAATGAAGATGCCGTGAGCCGCTGCTTGCAAG
AGTGTCAAGGGCATATGGCCCAAATCCGGCCAGCGTTAGCACAAGAGATG
ACCGAAGTGCCGCCCGAATACTTAGTAGCGCTCACGGTGCACCTGCAACA
CATTCTTCGGAACAAACGATGCTTACTGGCTTACATGCAGTATCGCCTTG
ACAAGGTTCGGGACCTGCGTTGGGAAACAGGGGGTGCCATCATCCCAACG
CGCTTACAACGGAAGTTATCCGCAAAGGAAAGCGAGTTCTTTGCTTCTTA
CGACAAGATTCTTTCTGACTACATGGGCAACTACCCTTTGCTTGACCTTA
CTGGCTCGACCTTGCCTCCGAAGGAAATATGCATTGAAGTTCGCGTGTTG
GCCGATTGCGGGGAAATCATGACTGATCAGGGCCCTGTTAATTTGGAGAG
AGGTACAAATCATTTTTTGCGGCGCGCTGATGTCGAAGGCCTTATTCGAC
AGGGCTTCCTGCTTCATATAGCCCCGTCGGCAAGGCAAGGCTCTTCCTGA
ATGGACTTTGGACTCAAGGGACGTGAGCTTTTGCAAGACTTAAAACGAAG
TGATTGGTTGCCTTTGTACAATGAAGATGCCGTGAGCCGCTGCTTGCAAG
AGTGTCAAGGGCATATGGCCCAAATCCGGCCAGCGTTAGCACAAGAGATG
ACCGAAGTGCCGCCCGAATACTTAGTAGCGCTCACGGTGCACCTGCAACA
CATTCTTCGGAACAAACGATGCTTACTGGCTTACATGCAGTATCGCCTTG
ACAAGGTTCGGGACCTGCGTTGGGAAACAGGGGGTGCCATCATCCCAACG
CGCTTACAACGGAAGTTATCCGCAAAGGAAAGCGAGTTCTTTGCTTCTTA
CGACAAGATTCTTTCTGACTACATGGGCAACTACCCTTTGCTTGACCTTA
CTGGCTCGACCTTGCCTCCGAAGGAAATATGCATTGAAGTTCGCGTGTTG
GCCGATTGCGGGGAAATCATGACTGATCAGGGCCCTGTTAATTTGGAGAG
AGGTACAAATCATTTTTTGCGGCGCGCTGATGTCGAAGGCCTTATTCGAC
AGGGCTTCCTGCTTCATATAGCCCCGTCGGCAAGGCAAGGCTCTTCCTGA
ATGGACTTTGGACTCAAGGGACGTGAGCTTTTGCAAGACTTAAAACGAAG
TGATTGGTTGCCTTTGTACAATGAAGATGCCGTGAGCCGCTGCTTGCAAG
AGTGTCAAGGGCATATGGCCCAAATCCGGCCAGCGTTAGCACAAGAGATG
ACCGAAGTGCCGCCCGAATACTTAGTAGCGCTCACGGTGCACCTGCAACA
CATTCTTCGGAACAAACGATGCTTACTGGCTTACATGCAGTATCGCCTTG
ACAAGGTTCGGGACCTGCGTTGGGAAACAGGGGGTGCCATCATCCCAACG
CGCTTACAACGGAAGTTATCCGCAAAGGAAAGCGAGTTCTTTGCTTCTTA
CGACAAGATTCTTTCTGACTACATGGGCAACTACCCTTTGCTTGACCTTA
CTGGCTCGACCTTGCCTCCGAAGGAAATATGCATTGAAGTTCGCGTGTTG
GCCGATTGCGGGGAAATCATGACTGATCAGGGCCCTGTTAATTTGGAGAG
AGGTACAAATCATTTTTTGCGGCGCGCTGATGTCGAAGGCCTTATTCGAC
AGGGCTTCCTGCTTCATATAGCCCCGTCGGCAAGGCAAGGCTCTTCCTGA
ATGGACTTTGGACTCAAGGGACGTGAGCTTTTGCAAGACTTAAAACGAAG
TGATTGGTTGCCTTTGTACAATGAAGATGCCGTGAGCCGCTGCTTGCAAG
AGTGTCAAGGGCATATGGCCCAAATCCGGCCAGCGTTAGCACAAGAGATG
ACCGAAGTGCCGCCCGAATACTTAGTAGCGCTCACGGTGCACCTGCAACA
CATTCTTCGGAACAAACGATGCTTACTGGCTTACATGCAGTATCGCCTTG
ACAAGGTTCGGGACCTGCGTTGGGAAACAGGGGGTGCCATCATCCCAACG
CGCTTACAACGGAAGTTATCCGCAAAGGAAAGCGAGTTCTTTGCTTCTTA
CGACAAGATTCTTTCTGACTACATGGGCAACTACCCTTTGCTTGACCTTA
CTGGCTCGACCTTGCCTCCGAAGGAAATATGCATTGAAGTTCGCGTGTTG
GCCGATTGCGGGGAAATCATGACTGATCAGGGCCCTGTTAATTTGGAGAG
AGGTACAAATCATTTTTTGCGGCGCGCTGATGTCGAAGGCCTTATTCGAC
AGGGCTTCCTGCTTCATATAGCCCCGTCGGCAAGGCAAGGCTCTTCCTGA

Synonyms

Publications