EWM29187.1, cds1528 (CDS) Nannochloropsis gaditana

Overview
NameEWM29187.1
Unique Namecds1528
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:875006..875155 +
Alignment locationCM002457.1:875507..875596 +
Alignment locationCM002457.1:875853..876026 +
Alignment locationCM002457.1:876153..876338 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29187.1
Productdna replication complex gins protein psf1
Orig transcript idgnl|cribi|Naga_100007g41.6514.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:875006..875155 +
CM002457.1supercontigCM002457.1:875507..875596 +
CM002457.1supercontigCM002457.1:875853..876026 +
CM002457.1supercontigCM002457.1:876153..876338 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR005339GINS_Psf1
IPR021151GINS_complex
Homology
BLAST of EWM29187.1 vs. NCBI_GenBank
Match: gi|585111707|gb|EWM29187.1| (dna replication complex gins protein psf1 [Nannochloropsis gaditana])

HSP 1 Score: 412.92 bits (1060), Expect = 4.167e-146
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0
Query:    1 MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALAQEMTEVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHIAPSARQGSS 199
            MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALAQEMTEVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHIAPSARQGSS
Sbjct:    1 MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALAQEMTEVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHIAPSARQGSS 199          
BLAST of EWM29187.1 vs. NCBI_GenBank
Match: gi|298706537|emb|CBJ29507.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 197.978 bits (502), Expect = 3.259e-61
Identity = 99/188 (52.66%), Postives = 129/188 (68.62%), Query Frame = 0
Query:    1 MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALAQEMT-EVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFL 187
            M+FG K ++LL +LKRSDWLP YNED V   L E Q    ++   L    T ++P    V+L VH Q +LRNKRCLL Y+++R D++  LRWETG  ++P  LQ+ LSA+E E F +YD+IL+++     L DLT    PPKE+ +EVRVL+DCGEIMTD G V L+RGT H LRR+DVE L+RQG L
Sbjct:    1 MNFGAKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLGGRTTSDIPDPVKVSLVVHHQALLRNKRCLLTYLKWRADRITQLRWETG-PVVPQELQQSLSAREMELFNTYDRILTNFTQGLNL-DLTADLQPPKELHVEVRVLSDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLL 186          
BLAST of EWM29187.1 vs. NCBI_GenBank
Match: gi|1214695751|gb|OWZ09451.1| (DNA replication complex GINS protein PSF1 [Phytophthora megakarya])

HSP 1 Score: 183.726 bits (465), Expect = 1.548e-55
Identity = 94/192 (48.96%), Postives = 127/192 (66.15%), Query Frame = 0
Query:    1 MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALAQ--EMTEVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHI 190
            M    KG+ELL++L+RSDWLP YNED V R ++E      +I   ++   ++   P      L V+ Q +LRNKRCL+AY+ +R++K++ LRWETG  IIP  L + L   E +FF  YD++L+DYM ++ L DLT    PPK++ +EVRVL DCGE+MT+ G VNLE  + HFLRR DVE LIRQG L  I
Sbjct:    1 MALNAKGKELLRELQRSDWLPPYNEDLVRRVVEESGLLHEEISKKMSMYADLVNEPASVHCGLVVNHQCLLRNKRCLIAYVHHRMEKIKALRWETG-TIIPASLAQNLCQGEVQFFNQYDQLLTDYMADFEL-DLTADIKPPKDLYVEVRVLRDCGEVMTESGLVNLEAHSQHFLRRVDVEQLIRQGLLEQI 190          
BLAST of EWM29187.1 vs. NCBI_GenBank
Match: gi|695391008|ref|XP_009519892.1| (hypothetical protein PHYSODRAFT_554712 [Phytophthora sojae] >gi|348684789|gb|EGZ24604.1| hypothetical protein PHYSODRAFT_554712 [Phytophthora sojae])

HSP 1 Score: 182.185 bits (461), Expect = 5.319e-55
Identity = 94/190 (49.47%), Postives = 126/190 (66.32%), Query Frame = 0
Query:    1 MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALAQEMTEVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHI 190
            M    KG+ELL++L+RSDWLP YNED V + ++E      ++   L      +P     AL V  Q +LRNKRCLLAY+ +R++K++ LRWETG  IIP  L + L  +E +FF  YD++L+DYM ++ L DL+    PPK++ +EVRVL DCGE+MT+ G VNLE  + HFLRR DVE LIRQG L  I
Sbjct:    1 MALNAKGKELLRELQRSDWLPPYNEDLVRQVVEESGLLHEELNRKLETFKEGMPKSVECALVVSHQGLLRNKRCLLAYLHHRMEKIKALRWETG-TIIPGPLAQNLCQREVQFFNQYDQMLTDYMADFEL-DLSADLKPPKDLYVEVRVLRDCGEVMTESGLVNLEAHSQHFLRRVDVEQLIRQGLLEQI 188          
BLAST of EWM29187.1 vs. NCBI_GenBank
Match: gi|675201699|ref|XP_008909734.1| (hypothetical protein PPTG_14572 [Phytophthora parasitica INRA-310] >gi|566017517|gb|ETI40428.1| hypothetical protein F443_14168 [Phytophthora parasitica P1569] >gi|567954896|gb|ETK80529.1| hypothetical protein L915_13814 [Phytophthora parasitica] >gi|567983564|gb|ETL33953.1| hypothetical protein L916_13710 [Phytophthora parasitica] >gi|568013050|gb|ETL87227.1| hypothetical protein L917_13516 [Phytophthora parasitica] >gi|568043116|gb|ETM40414.1| hypothetical protein L914_13624 [Phytophthora parasitica] >gi|568089960|gb|ETN04797.1| hypothetical protein PPTG_14572 [Phytophthora parasitica INRA-310] >gi|570321181|gb|ETO69129.1| hypothetical protein F444_14197 [Phytophthora parasitica P1976] >gi|570935336|gb|ETP00593.1| hypothetical protein F441_21990 [Phytophthora parasitica CJ01A1] >gi|570976563|gb|ETP38344.1| hypothetical protein F442_14012 [Phytophthora parasitica P10297])

HSP 1 Score: 180.259 bits (456), Expect = 3.275e-54
Identity = 94/192 (48.96%), Postives = 127/192 (66.15%), Query Frame = 0
Query:    1 MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALAQEMTEVPPEYLVA--LTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHI 190
            M    K RELL++L+RSDWLP YNED V + ++E      +I   +A     +     VA  L V+ Q +LRNKRCL+AY+ +R++K++ LRWETG  IIP +L + L  +E +FF  YD++L+DYM  + L DL+    PPK++ +EVRVL DCGE+MT+ G VNLE  + HFLRR DVE LIRQG L  I
Sbjct:    1 MALNAKARELLRELQRSDWLPPYNEDLVRQVVEESGVLEEEIARKMATFDDNLTENTFVACGLVVNHQCLLRNKRCLIAYVHHRMEKIKALRWETG-TIIPAQLAQNLCQREVQFFNQYDQLLTDYMAEFEL-DLSADMKPPKDLYVEVRVLRDCGEVMTESGLVNLEAHSQHFLRRVDVEQLIRQGLLEQI 190          
BLAST of EWM29187.1 vs. NCBI_GenBank
Match: gi|669164152|ref|XP_008617638.1| (hypothetical protein SDRG_13334 [Saprolegnia diclina VS20] >gi|530730757|gb|EQC28999.1| hypothetical protein SDRG_13334 [Saprolegnia diclina VS20])

HSP 1 Score: 173.711 bits (439), Expect = 1.326e-51
Identity = 86/188 (45.74%), Postives = 126/188 (67.02%), Query Frame = 0
Query:    6 KGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALA---QEMTEVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHI 190
            K +ELLQ+L RS+WLP YNED++ +  +E      QI   +     E++E P E    + ++ Q + RNKRC LAY+ +R++K+++LRW+TG +++P  L   L A+E +FF  YD++L+DYM ++ + DL     PPK++ IEVRVL DCGEI T+ G V+L   + HFLRR DVEGLIRQG L+ +
Sbjct:    6 KAKELLQELGRSEWLPPYNEDSIRQISEEVHALNKQIVKTIQTFDNELSEYPAEQ-CGVVINHQCLTRNKRCTLAYVNHRVNKIKELRWQTG-SVVPDHLAPALHAREVQFFHGYDQLLTDYMSSFGI-DLAADMQPPKDLFIEVRVLKDCGEIYTENGAVHLRANSTHFLRRMDVEGLIRQGMLVQL 190          
BLAST of EWM29187.1 vs. NCBI_GenBank
Match: gi|813191984|ref|XP_012207874.1| (hypothetical protein SPRG_12434 [Saprolegnia parasitica CBS 223.65] >gi|641527115|gb|KDO21427.1| hypothetical protein SPRG_12434 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 173.326 bits (438), Expect = 1.899e-51
Identity = 86/188 (45.74%), Postives = 125/188 (66.49%), Query Frame = 0
Query:    6 KGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALA---QEMTEVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHI 190
            K +ELLQ+L RS+WLP YNED + +  +E      QI   +     E++E P E    + ++ Q + RNKRC LAY+ +R++K+++LRW+TG +++P  L   L A+E +FF  YD++L+DYM ++ + DL     PPK++ IEVRVL DCGEI T+ G V+L   + HFLRR DVEGLIRQG L+ +
Sbjct:    6 KAKELLQELGRSEWLPPYNEDNIRQISEEVHALNKQIVKTIQTFDSELSEYPAEQ-CGVVINHQCLTRNKRCTLAYINHRVNKIKELRWQTG-SVVPEHLAPALHAREVQFFHGYDQLLTDYMSSFGI-DLAADMQPPKDLFIEVRVLKDCGEIYTENGAVHLRANSTHFLRRTDVEGLIRQGMLVQL 190          
BLAST of EWM29187.1 vs. NCBI_GenBank
Match: gi|301121957|ref|XP_002908705.1| (DNA replication complex GINS protein PSF1 [Phytophthora infestans T30-4] >gi|262099467|gb|EEY57519.1| DNA replication complex GINS protein PSF1 [Phytophthora infestans T30-4])

HSP 1 Score: 172.17 bits (435), Expect = 2.866e-51
Identity = 87/190 (45.79%), Postives = 122/190 (64.21%), Query Frame = 0
Query:    1 MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALAQEMTEVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHI 190
            M   +K +EL+++L+RSDWLP YNED V + ++E                          L V+ Q +LRNKRCL+AY+ +R++K++ LRWETG  I+P +L + L  +E +FF  YD++L+DYM ++ L DL+    PPK++ +EVRVL DCGE+MT+ G VNLE  + HFLRR DVE LIRQG L  I
Sbjct:    1 MALNMKAKELVRELQRSDWLPPYNEDLVRQVVEESGNTYVA-----------------CGLVVNHQCLLRNKRCLIAYLHHRIEKIKALRWETG-TIMPAQLAQNLCQREVQFFNQYDQLLTDYMADFEL-DLSADMKPPKDLYVEVRVLRDCGEVMTESGLVNLEAHSQHFLRRVDVEQLIRQGLLEQI 171          
BLAST of EWM29187.1 vs. NCBI_GenBank
Match: gi|1173944912|gb|OQR93597.1| (DNA replication complex GINS protein PSF1 [Thraustotheca clavata])

HSP 1 Score: 169.474 bits (428), Expect = 6.328e-50
Identity = 87/193 (45.08%), Postives = 123/193 (63.73%), Query Frame = 0
Query:    1 MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRP---ALAQEMTEVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHI 190
            M    K +ELL +L RS+WLP YNED+V +  QE  G   Q+     A   ++ E P E    L  H Q ++RNKR +LAY+ +R++K+++LRW+TG +++P  L   L  +E +FF  YD++L+ YM  + + DL     PPK++ IEVRVL DCGEI T+ G ++L   + HFLRR DVEGLIRQG L+ I
Sbjct:    1 MAVCTKAKELLLELTRSEWLPPYNEDSVRQISQEVHGFHKQVLKKLQAYEDDIAEHPAEQCNVLVSH-QCLMRNKRTILAYLNHRVNKIKELRWQTG-SVVPEHLAPALCTREMQFFHGYDQLLAGYMSGFGI-DLAADLQPPKDLFIEVRVLKDCGEIYTENGAIHLRANSTHFLRRTDVEGLIRQGMLVQI 190          
BLAST of EWM29187.1 vs. NCBI_GenBank
Match: gi|970631797|gb|KUF78288.1| (DNA replication complex GINS protein PSF1 [Phytophthora nicotianae])

HSP 1 Score: 165.622 bits (418), Expect = 3.226e-48
Identity = 94/209 (44.98%), Postives = 127/209 (60.77%), Query Frame = 0
Query:    1 MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALAQEMTEVPPEYLVA--LTVHLQHILRNKRCLLAYM---------QYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTL--------PPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHI 190
            M    K RELL++L+RSDWLP YNED V + ++E      +I   +A     +     VA  L V+ Q +LRNKRCL+AY+          +R++K++ LRWETG  IIP +L + L  +E +FF  YD++L+DYM  + L DL+            PPK++ +EVRVL DCGE+MT+ G VNLE  + HFLRR DVE LIRQG L  I
Sbjct:    1 MALNAKARELLRELQRSDWLPPYNEDLVRQVVEESGVLEEEIARKMATFDDNLTENTFVACGLVVNHQCLLRNKRCLIAYVYETLIPQLKHHRMEKIKALRWETG-TIIPAQLAQNLCQREVQFFNQYDQLLTDYMAEFEL-DLSACIARVTSQDMKPPKDLYVEVRVLRDCGEVMTESGLVNLEAHSQHFLRRVDVEQLIRQGLLEQI 207          
The following BLAST results are available for this feature:
BLAST of EWM29187.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111707|gb|EWM29187.1|4.167e-146100.00dna replication complex gins protein psf1 [Nannoch... [more]
gi|298706537|emb|CBJ29507.1|3.259e-6152.66conserved unknown protein [Ectocarpus siliculosus][more]
gi|1214695751|gb|OWZ09451.1|1.548e-5548.96DNA replication complex GINS protein PSF1 [Phytoph... [more]
gi|695391008|ref|XP_009519892.1|5.319e-5549.47hypothetical protein PHYSODRAFT_554712 [Phytophtho... [more]
gi|675201699|ref|XP_008909734.1|3.275e-5448.96hypothetical protein PPTG_14572 [Phytophthora para... [more]
gi|669164152|ref|XP_008617638.1|1.326e-5145.74hypothetical protein SDRG_13334 [Saprolegnia dicli... [more]
gi|813191984|ref|XP_012207874.1|1.899e-5145.74hypothetical protein SPRG_12434 [Saprolegnia paras... [more]
gi|301121957|ref|XP_002908705.1|2.866e-5145.79DNA replication complex GINS protein PSF1 [Phytoph... [more]
gi|1173944912|gb|OQR93597.1|6.328e-5045.08DNA replication complex GINS protein PSF1 [Thraust... [more]
gi|970631797|gb|KUF78288.1|3.226e-4844.98DNA replication complex GINS protein PSF1 [Phytoph... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1531rna1531Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications