EWM29187.1, cds1528 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29187.1 vs. NCBI_GenBank
Match: gi|585111707|gb|EWM29187.1| (dna replication complex gins protein psf1 [Nannochloropsis gaditana]) HSP 1 Score: 412.92 bits (1060), Expect = 4.167e-146 Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0 Query: 1 MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALAQEMTEVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHIAPSARQGSS 199 MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALAQEMTEVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHIAPSARQGSS Sbjct: 1 MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALAQEMTEVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHIAPSARQGSS 199
BLAST of EWM29187.1 vs. NCBI_GenBank
Match: gi|298706537|emb|CBJ29507.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 197.978 bits (502), Expect = 3.259e-61 Identity = 99/188 (52.66%), Postives = 129/188 (68.62%), Query Frame = 0 Query: 1 MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALAQEMT-EVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFL 187 M+FG K ++LL +LKRSDWLP YNED V L E Q ++ L T ++P V+L VH Q +LRNKRCLL Y+++R D++ LRWETG ++P LQ+ LSA+E E F +YD+IL+++ L DLT PPKE+ +EVRVL+DCGEIMTD G V L+RGT H LRR+DVE L+RQG L Sbjct: 1 MNFGAKSKDLLVELKRSDWLPPYNEDGVRGVLAEIQALYDELTDTLGGRTTSDIPDPVKVSLVVHHQALLRNKRCLLTYLKWRADRITQLRWETG-PVVPQELQQSLSAREMELFNTYDRILTNFTQGLNL-DLTADLQPPKELHVEVRVLSDCGEIMTDHGSVKLDRGTTHLLRRSDVEHLVRQGLL 186
BLAST of EWM29187.1 vs. NCBI_GenBank
Match: gi|1214695751|gb|OWZ09451.1| (DNA replication complex GINS protein PSF1 [Phytophthora megakarya]) HSP 1 Score: 183.726 bits (465), Expect = 1.548e-55 Identity = 94/192 (48.96%), Postives = 127/192 (66.15%), Query Frame = 0 Query: 1 MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALAQ--EMTEVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHI 190 M KG+ELL++L+RSDWLP YNED V R ++E +I ++ ++ P L V+ Q +LRNKRCL+AY+ +R++K++ LRWETG IIP L + L E +FF YD++L+DYM ++ L DLT PPK++ +EVRVL DCGE+MT+ G VNLE + HFLRR DVE LIRQG L I Sbjct: 1 MALNAKGKELLRELQRSDWLPPYNEDLVRRVVEESGLLHEEISKKMSMYADLVNEPASVHCGLVVNHQCLLRNKRCLIAYVHHRMEKIKALRWETG-TIIPASLAQNLCQGEVQFFNQYDQLLTDYMADFEL-DLTADIKPPKDLYVEVRVLRDCGEVMTESGLVNLEAHSQHFLRRVDVEQLIRQGLLEQI 190
BLAST of EWM29187.1 vs. NCBI_GenBank
Match: gi|695391008|ref|XP_009519892.1| (hypothetical protein PHYSODRAFT_554712 [Phytophthora sojae] >gi|348684789|gb|EGZ24604.1| hypothetical protein PHYSODRAFT_554712 [Phytophthora sojae]) HSP 1 Score: 182.185 bits (461), Expect = 5.319e-55 Identity = 94/190 (49.47%), Postives = 126/190 (66.32%), Query Frame = 0 Query: 1 MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALAQEMTEVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHI 190 M KG+ELL++L+RSDWLP YNED V + ++E ++ L +P AL V Q +LRNKRCLLAY+ +R++K++ LRWETG IIP L + L +E +FF YD++L+DYM ++ L DL+ PPK++ +EVRVL DCGE+MT+ G VNLE + HFLRR DVE LIRQG L I Sbjct: 1 MALNAKGKELLRELQRSDWLPPYNEDLVRQVVEESGLLHEELNRKLETFKEGMPKSVECALVVSHQGLLRNKRCLLAYLHHRMEKIKALRWETG-TIIPGPLAQNLCQREVQFFNQYDQMLTDYMADFEL-DLSADLKPPKDLYVEVRVLRDCGEVMTESGLVNLEAHSQHFLRRVDVEQLIRQGLLEQI 188
BLAST of EWM29187.1 vs. NCBI_GenBank
Match: gi|675201699|ref|XP_008909734.1| (hypothetical protein PPTG_14572 [Phytophthora parasitica INRA-310] >gi|566017517|gb|ETI40428.1| hypothetical protein F443_14168 [Phytophthora parasitica P1569] >gi|567954896|gb|ETK80529.1| hypothetical protein L915_13814 [Phytophthora parasitica] >gi|567983564|gb|ETL33953.1| hypothetical protein L916_13710 [Phytophthora parasitica] >gi|568013050|gb|ETL87227.1| hypothetical protein L917_13516 [Phytophthora parasitica] >gi|568043116|gb|ETM40414.1| hypothetical protein L914_13624 [Phytophthora parasitica] >gi|568089960|gb|ETN04797.1| hypothetical protein PPTG_14572 [Phytophthora parasitica INRA-310] >gi|570321181|gb|ETO69129.1| hypothetical protein F444_14197 [Phytophthora parasitica P1976] >gi|570935336|gb|ETP00593.1| hypothetical protein F441_21990 [Phytophthora parasitica CJ01A1] >gi|570976563|gb|ETP38344.1| hypothetical protein F442_14012 [Phytophthora parasitica P10297]) HSP 1 Score: 180.259 bits (456), Expect = 3.275e-54 Identity = 94/192 (48.96%), Postives = 127/192 (66.15%), Query Frame = 0 Query: 1 MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALAQEMTEVPPEYLVA--LTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHI 190 M K RELL++L+RSDWLP YNED V + ++E +I +A + VA L V+ Q +LRNKRCL+AY+ +R++K++ LRWETG IIP +L + L +E +FF YD++L+DYM + L DL+ PPK++ +EVRVL DCGE+MT+ G VNLE + HFLRR DVE LIRQG L I Sbjct: 1 MALNAKARELLRELQRSDWLPPYNEDLVRQVVEESGVLEEEIARKMATFDDNLTENTFVACGLVVNHQCLLRNKRCLIAYVHHRMEKIKALRWETG-TIIPAQLAQNLCQREVQFFNQYDQLLTDYMAEFEL-DLSADMKPPKDLYVEVRVLRDCGEVMTESGLVNLEAHSQHFLRRVDVEQLIRQGLLEQI 190
BLAST of EWM29187.1 vs. NCBI_GenBank
Match: gi|669164152|ref|XP_008617638.1| (hypothetical protein SDRG_13334 [Saprolegnia diclina VS20] >gi|530730757|gb|EQC28999.1| hypothetical protein SDRG_13334 [Saprolegnia diclina VS20]) HSP 1 Score: 173.711 bits (439), Expect = 1.326e-51 Identity = 86/188 (45.74%), Postives = 126/188 (67.02%), Query Frame = 0 Query: 6 KGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALA---QEMTEVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHI 190 K +ELLQ+L RS+WLP YNED++ + +E QI + E++E P E + ++ Q + RNKRC LAY+ +R++K+++LRW+TG +++P L L A+E +FF YD++L+DYM ++ + DL PPK++ IEVRVL DCGEI T+ G V+L + HFLRR DVEGLIRQG L+ + Sbjct: 6 KAKELLQELGRSEWLPPYNEDSIRQISEEVHALNKQIVKTIQTFDNELSEYPAEQ-CGVVINHQCLTRNKRCTLAYVNHRVNKIKELRWQTG-SVVPDHLAPALHAREVQFFHGYDQLLTDYMSSFGI-DLAADMQPPKDLFIEVRVLKDCGEIYTENGAVHLRANSTHFLRRMDVEGLIRQGMLVQL 190
BLAST of EWM29187.1 vs. NCBI_GenBank
Match: gi|813191984|ref|XP_012207874.1| (hypothetical protein SPRG_12434 [Saprolegnia parasitica CBS 223.65] >gi|641527115|gb|KDO21427.1| hypothetical protein SPRG_12434 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 173.326 bits (438), Expect = 1.899e-51 Identity = 86/188 (45.74%), Postives = 125/188 (66.49%), Query Frame = 0 Query: 6 KGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALA---QEMTEVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHI 190 K +ELLQ+L RS+WLP YNED + + +E QI + E++E P E + ++ Q + RNKRC LAY+ +R++K+++LRW+TG +++P L L A+E +FF YD++L+DYM ++ + DL PPK++ IEVRVL DCGEI T+ G V+L + HFLRR DVEGLIRQG L+ + Sbjct: 6 KAKELLQELGRSEWLPPYNEDNIRQISEEVHALNKQIVKTIQTFDSELSEYPAEQ-CGVVINHQCLTRNKRCTLAYINHRVNKIKELRWQTG-SVVPEHLAPALHAREVQFFHGYDQLLTDYMSSFGI-DLAADMQPPKDLFIEVRVLKDCGEIYTENGAVHLRANSTHFLRRTDVEGLIRQGMLVQL 190
BLAST of EWM29187.1 vs. NCBI_GenBank
Match: gi|301121957|ref|XP_002908705.1| (DNA replication complex GINS protein PSF1 [Phytophthora infestans T30-4] >gi|262099467|gb|EEY57519.1| DNA replication complex GINS protein PSF1 [Phytophthora infestans T30-4]) HSP 1 Score: 172.17 bits (435), Expect = 2.866e-51 Identity = 87/190 (45.79%), Postives = 122/190 (64.21%), Query Frame = 0 Query: 1 MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALAQEMTEVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHI 190 M +K +EL+++L+RSDWLP YNED V + ++E L V+ Q +LRNKRCL+AY+ +R++K++ LRWETG I+P +L + L +E +FF YD++L+DYM ++ L DL+ PPK++ +EVRVL DCGE+MT+ G VNLE + HFLRR DVE LIRQG L I Sbjct: 1 MALNMKAKELVRELQRSDWLPPYNEDLVRQVVEESGNTYVA-----------------CGLVVNHQCLLRNKRCLIAYLHHRIEKIKALRWETG-TIMPAQLAQNLCQREVQFFNQYDQLLTDYMADFEL-DLSADMKPPKDLYVEVRVLRDCGEVMTESGLVNLEAHSQHFLRRVDVEQLIRQGLLEQI 171
BLAST of EWM29187.1 vs. NCBI_GenBank
Match: gi|1173944912|gb|OQR93597.1| (DNA replication complex GINS protein PSF1 [Thraustotheca clavata]) HSP 1 Score: 169.474 bits (428), Expect = 6.328e-50 Identity = 87/193 (45.08%), Postives = 123/193 (63.73%), Query Frame = 0 Query: 1 MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRP---ALAQEMTEVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHI 190 M K +ELL +L RS+WLP YNED+V + QE G Q+ A ++ E P E L H Q ++RNKR +LAY+ +R++K+++LRW+TG +++P L L +E +FF YD++L+ YM + + DL PPK++ IEVRVL DCGEI T+ G ++L + HFLRR DVEGLIRQG L+ I Sbjct: 1 MAVCTKAKELLLELTRSEWLPPYNEDSVRQISQEVHGFHKQVLKKLQAYEDDIAEHPAEQCNVLVSH-QCLMRNKRTILAYLNHRVNKIKELRWQTG-SVVPEHLAPALCTREMQFFHGYDQLLAGYMSGFGI-DLAADLQPPKDLFIEVRVLKDCGEIYTENGAIHLRANSTHFLRRTDVEGLIRQGMLVQI 190
BLAST of EWM29187.1 vs. NCBI_GenBank
Match: gi|970631797|gb|KUF78288.1| (DNA replication complex GINS protein PSF1 [Phytophthora nicotianae]) HSP 1 Score: 165.622 bits (418), Expect = 3.226e-48 Identity = 94/209 (44.98%), Postives = 127/209 (60.77%), Query Frame = 0 Query: 1 MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALAQEMTEVPPEYLVA--LTVHLQHILRNKRCLLAYM---------QYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTL--------PPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHI 190 M K RELL++L+RSDWLP YNED V + ++E +I +A + VA L V+ Q +LRNKRCL+AY+ +R++K++ LRWETG IIP +L + L +E +FF YD++L+DYM + L DL+ PPK++ +EVRVL DCGE+MT+ G VNLE + HFLRR DVE LIRQG L I Sbjct: 1 MALNAKARELLRELQRSDWLPPYNEDLVRQVVEESGVLEEEIARKMATFDDNLTENTFVACGLVVNHQCLLRNKRCLIAYVYETLIPQLKHHRMEKIKALRWETG-TIIPAQLAQNLCQREVQFFNQYDQLLTDYMAEFEL-DLSACIARVTSQDMKPPKDLYVEVRVLRDCGEVMTESGLVNLEAHSQHFLRRVDVEQLIRQGLLEQI 207 The following BLAST results are available for this feature:
BLAST of EWM29187.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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