rna1518, rna1518 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1518
Unique Name	rna1518
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1865
Alignment location	CM002457.1:829040..831246 +

Link to JBrowse

Properties


Property Name	Value
Product	rubisco expression protein
Orig transcript id	gnl\|cribi\|Naga_100007g58.6492.mrna
Orig protein id	gnl\|cribi\|Naga_100007g58.6492
Gene	cbbX
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:829040..831246 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
cbbX	gene1463	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1518	rna1518-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29165.1	cds1515	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:829040..831246+
coding sequence from alignment at CM002457.1:829040..831246+

mRNA sequence

>rna1518 ID=rna1518|Name=rna1518|organism=Nannochloropsis gaditana|type=mRNA|length=1865bp
AGAGGCCTTGACGATGCTTCAATGACACGTAAGACTCAACCGCATACACT
GGAACAATGGTGACGACGATGTTGAAGGCGACCTTGATGGGGGGCTGCCT
CTTCTTGGCCAGTGGATTTCAGATGCCTGCACCCCGTGCAATGGGGAGGG
GCCTTCCAATTCGCATGGCGGAGGAGGGGGGGTCCAAGCATGGAGGCCTC
GTCTACGACCGGGAAAAAGCGCTGTCGGGGGATGCCAACGCCGGCAACTT
TCGTAAGTTGAGCGACGCCATGGTGCGTGCAGAAAAGGAAGCGAAGCGTA
ATGAGGAAGAGCGTAGGCAGCGGGAAATGGCAGAGGAGCTCGCACGGCAG
GCCCGGGCCAAGAAAGTGGCCAAGTTGAACGAGGTGATGTCTACGCCCAA
GCAAGCTGTGGGCTCCGCCGACGAATTCAGCTGGGACAGCGGCGTGCAGA
CAGCCTTGGACCGGCTGGACAATGAGCTGATCGGGCTGAAGCCGGTAAAG
TCCCGCGTCCGCGAGCTGGCGAGCATGCTAGTGGTGGACAAGATGCGGCA
GTCGATCGGTCTCGACCCCTTCATCTCCGACGGCCTCCACATGTGCTTCA
CGGGCGCCCCAGGCACGGGCAAGACGACGGTGGCATTCCGCATGGGGGAC
ATTTTCAAGGCGATGGGCTACTGCCGGGCCGGCCACGTGGTGCTGGCGAC
GCGCGACACTTTGGTGGGCCAGTACGTCGGCCACACGGGGCCCAAGACCA
AGGAGGTGATCAAGCAGGCCATGGGCGGCATCCTCTTCATCGACGAGGCC
TATTATCTGTACAACGCCGGCAACGACCGCGACTACGGCGTGGAGTCCAT
CGAGATCCTCCTCAAGGTAATGGAGCAGCGCTCCTCCGACCTGATCGTCA
TCTTCGCGGGCTACAAGGACCGCATGGACCAGTTCTTCTCATACATCCCC
GGCATGCAGTCCCGCGTCAATCTCCACATCGACTTTCCGGATATGGAGCC
CGACGACCTGGTGGACGTGGGCAAGCTCATGTTCAACAACATGGAGTACA
AGCTCGCCCCCGACGCCGAGCCCGCCCTCCGAGAGTACGTCACGCTGCGC
AAGGAGAAACTCTTCTTCTCCAATGCCCGCTCTGTCCGCAACGCAGTCGA
CCTGGCTCGCATGGCGGCGGCCAATAGGGTGTACGAGCTGGCCACGGCCC
CGGGAGCCTCGGGGCTCATCACGCTGGACGAGCTGACGCAGGTCAAGAAA
GAGGACTTCGACGGGCTGCTGGACTTGGTCCGCAACGCCCCCGAGGGCGC
TATTCTGGCCTAATGCCGATCGCGTGTAGATCGTATAAGCTTATGTGCAG
TCCATGCTTGTGCGTGATTTCCCGCAATCTCCATGTCCACCACTACGGGC
TGTCGGAGGGTGTGTACTCAATATTTCTCTCTGGAACGTGTCGTGCGGTA
GGGGACGATAGGGGATGCGCTTGGGTTTGCCAGATACGTGTTATCGACGA
TGAAAGATTGATACGGACAAAATAATTGAACTTTTGTAGTCGTGTAGAGA
CAAGGGCCAGGGAGATAGTGGGTAGCGTCGCTTGAGCTCTCTTTCCTTAG
ACAAATCGATGTCCGCAAGGAACAACACGGTATGTGTGATGATTGGAACA
GCGTATGGCGGAAAGGAATTGAAGGACCGAGGGAAGAGAGAAACGAGTTT
GACCAATGAGGGATGAGCTGTGACTTTTCCCCTTTTGTTGCACTTTATTC
TCATGTATGCTTTCTCTTCGACAAAATTGTTGTCCTAAGACAAGTTGTAA
TCATCTAGAGCGGAAAGGGAGCGTCCGCGGATCAAGTGATCTCCCGCGGC
TCCCGTAACTACCCG

protein sequence of rna1518

>rna1518-protein ID=rna1518-protein|Name=rna1518|organism=Nannochloropsis gaditana|type=polypeptide|length=418bp
MVTTMLKATLMGGCLFLASGFQMPAPRAMGRGLPIRMAEEGGSKHGGLVY
DREKALSGDANAGNFRKLSDAMVRAEKEAKRNEEERRQREMAEELARQAR
AKKVAKLNEVMSTPKQAVGSADEFSWDSGVQTALDRLDNELIGLKPVKSR
VRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIF
KAMGYCRAGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYY
LYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGM
QSRVNLHIDFPDMEPDDLVDVGKLMFNNMEYKLAPDAEPALREYVTLRKE
KLFFSNARSVRNAVDLARMAAANRVYELATAPGASGLITLDELTQVKKED
FDGLLDLVRNAPEGAILA

mRNA from alignment at CM002457.1:829040..831246+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1518 ID=rna1518|Name=rna1518|organism=Nannochloropsis gaditana|type=mRNA|length=2207bp|location=Sequence derived from alignment at CM002457.1:829040..831246+ (Nannochloropsis gaditana)
GGTCAATGCATGAGACGTTGAGACATACGCTTCCTACGTGTGCAGGGCGA
TGGTGGACACGATGCGGTACCAGTCGCACGTTTGAGGGTTATTGTGCCTC
TGTTTGTGGGATTACTCGGGTACCAGGTGTAGGAAAGAACGCGCGAGCAC
GGCAACAAAAAGATCTTGTCCTGGTCTCACCCTTCTTCTGCTTCATGCAT
ACTACACTCCCACGCTTGCGTTCCATTTTCGGCATCATAATGCACAGACT
CAACCGCATACACTGGAACAATGGTGACGACGATGTTGAAGGCGACCTTG
ATGGGGGGCTGCCTCTTCTTGGCCAGTGGATTTCAGGTAAGTGTCGGGCT
AGCTGGGCATGGGGACGGTGCAAATTCAGGTCGGGGGAGACTATCCCTTT
ATCAAACAAAATGCTCCTCCTGGCCTGATCACatcgcttttctttttccg
cgCCTCGATGTCAGATGCCTGCACCCCGTGCAATGGGGAGGGGCCTTCCA
ATTCgcatggcggaggagggggggtccAAGCATGGAGGCCTCGTCTACGA
CCGGGAAAAAGCGCTGTCGGGGGATGCCAACGCCGGCAACTTTCGTAAGT
TGAGCGACGCCATGGTGCGTGCAGAAAAGGAAGCGAAGCGTAATGAGGAA
GAGCGTAGGCAGCGGGAAATGGCAGAGGAGCTCGCACGGCAGGCCCGGGC
CAAGAAAGTGGCCAAGTTGAACGAGGTGATGTCTACGCCCAAGCAAGCTG
TGGGCTCCGCCGACGAATTCAGCTGGGACAGCGGCGTGCAGACAGCCTTG
GACCGGCTGGACAATGAGCTGATCGGGCTGAAGCCGGTAAAGTCCCGCGT
CCGCGAGCTGGCGAGCATGCTAGTGGTGGACAAGATGCGGCAGTCGATCG
GTCTCGACCCCTTCATCTCCGACGGCCTCCACATGTGCTTCACGGGCGCC
CCAGGCACGGGCAAGACGACGGTGGCATTCCGCATGGGGGACATTTTCAA
GGCGATGGGCTACTGCCGGGCCGGCCACGTGGTGCTGGCGACGCGCGACA
CTTTGGTGGGCCAGTACGTCGGCCACACGGGGCCCAAGACCAAGGAGGTG
ATCAAGCAGGCCATGGGcggcatcctcttcatcgaCGAGGCCTATTATCT
GTACAACGCCGGCAACGACCGCGACTACGGCGTGGAGTCCATCGAGATCC
TCCTCAAGGTAATGGAGCAGCGCTCCTCCGACCTGATCGTCATCTTCGCG
GGCTACAAGGACCGCATGGACCAGTTCTTCTCATACATCCCCGGCATGCA
GTCCCGCGTCAATCTCCACATCGACTTTCCGGATATGGAGCCCGACGACC
TGGTGGACGTGGGCAAGCTCATGTTCAACAACATGGAGTACAAGCTCGCC
CCCGACGccgagcccgccctccgagaGTACGTCACGCTGCGCAAGGAGAa
actcttcttctccaatGCCCGCTCTGTCCGCAACGCAGTCGACCTGGCTC
gcatggcggcggccaatAGGGTGTACGAgctggccacggccccgggAGCC
TCGGGGCTCATCACGCTGGACGAGCTGACGCAGGTCAAGAAAGAGGACTT
CGACGGGCTGCTGGACTTGGTCCGCAACGCCCCCGAGGGCGCTATTCTGG
CCTAATGCCGATCGCGTGTAGATCGTATAAGCTTATGTGCAGTCCATGCT
TGTGCGTGATTTCCCGCAATCTCCATGTCCACCACTACGGGCTGTCGGAG
GGTGTGTACTCAATATTTCTCTCTGGAACGTGTCGTGCGGTAGGGGACGA
TAGGGGATGCGCTTGGGTTTGCCAGATACGTGTTATCGACGATGAAAGAT
TGATACGGACAAAATAATTGAACTTTTGTAGTCGTGTAGAGACAAGGGCC
AGGGAGATAGTGGGTAGCGTCGCTTGAGCTCTCTTTCCTTAGACAAATCG
ATGTCCGCAAGGAACAACACGGTATGTGTGATGATTGGAACAGCGTATGG
CGGAAAGGAATTGAAGGAccgagggaagagagaaacgAGTTTGACCAATG
AGGGATGAGCTGTGACTTTTCCCCTTTTGTTGCACTTTATTCTCATGTAT
GCTTTCTCTTCGACAAAATTGTTGTCCTAAGACAAGTTGTAATCATCTAG
AGCGGAAAGGGAGCGTCCGCGGATCAAGTGATCTCCCGCGGCTCCCGTAA
CTACCCG

Coding sequence (CDS) from alignment at CM002457.1:829040..831246+

>rna1518 ID=rna1518|Name=rna1518|organism=Nannochloropsis gaditana|type=CDS|length=2514bp|location=Sequence derived from alignment at CM002457.1:829040..831246+ (Nannochloropsis gaditana)
ATGGTGACGACGATGTTGAAGGCGACCTTGATGGGGGGCTGCCTCTTCTT
GGCCAGTGGATTTCAGATGCCTGCACCCCGTGCAATGGGGAGGGGCCTTC
CAATTCgcatggcggaggagggggggtccAAGCATGGAGGCCTCGTCTAC
GACCGGGAAAAAGCGCTGTCGGGGGATGCCAACGCCGGCAACTTTCGTAA
GTTGAGCGACGCCATGGTGCGTGCAGAAAAGGAAGCGAAGCGTAATGAGG
AAGAGCGTAGGCAGCGGGAAATGGCAGAGGAGCTCGCACGGCAGGCCCGG
GCCAAGAAAGTGGCCAAGTTGAACGAGGTGATGTCTACGCCCAAGCAAGC
TGTGGGCTCCGCCGACGAATTCAGCTGGGACAGCGGCGTGCAGACAGCCT
TGGACCGGCTGGACAATGAGCTGATCGGGCTGAAGCCGGTAAAGTCCCGC
GTCCGCGAGCTGGCGAGCATGCTAGTGGTGGACAAGATGCGGCAGTCGAT
CGGTCTCGACCCCTTCATCTCCGACGGCCTCCACATGTGCTTCACGGGCG
CCCCAGGCACGGGCAAGACGACGGTGGCATTCCGCATGGGGGACATTTTC
AAGGCGATGGGCTACTGCCGGGCCGGCCACGTGGTGCTGGCGACGCGCGA
CACTTTGGTGGGCCAGTACGTCGGCCACACGGGGCCCAAGACCAAGGAGG
TGATCAAGCAGGCCATGGGcggcatcctcttcatcgaCGAGGCCTATTAT
CTGTACAACGCCGGCAACGACCGCGACTACGGCGTGGAGTCCATCGAGAT
CCTCCTCAAGGTAATGGAGCAGCGCTCCTCCGACCTGATCGTCATCTTCG
CGGGCTACAAGGACCGCATGGACCAGTTCTTCTCATACATCCCCGGCATG
CAGTCCCGCGTCAATCTCCACATCGACTTTCCGGATATGGAGCCCGACGA
CCTGGTGGACGTGGGCAAGCTCATGTTCAACAACATGGAGTACAAGCTCG
CCCCCGACGccgagcccgccctccgagaGTACGTCACGCTGCGCAAGGAG
AaactcttcttctccaatGCCCGCTCTGTCCGCAACGCAGTCGACCTGGC
TCgcatggcggcggccaatAGGGTGTACGAgctggccacggccccgggAG
CCTCGGGGCTCATCACGCTGGACGAGCTGACGCAGGTCAAGAAAGAGGAC
TTCGACGGGCTGCTGGACTTGGTCCGCAACGCCCCCGAGGGCGCTATTCT
GGCCTAAATGGTGACGACGATGTTGAAGGCGACCTTGATGGGGGGCTGCC
TCTTCTTGGCCAGTGGATTTCAGATGCCTGCACCCCGTGCAATGGGGAGG
GGCCTTCCAATTCgcatggcggaggagggggggtccAAGCATGGAGGCCT
CGTCTACGACCGGGAAAAAGCGCTGTCGGGGGATGCCAACGCCGGCAACT
TTCGTAAGTTGAGCGACGCCATGGTGCGTGCAGAAAAGGAAGCGAAGCGT
AATGAGGAAGAGCGTAGGCAGCGGGAAATGGCAGAGGAGCTCGCACGGCA
GGCCCGGGCCAAGAAAGTGGCCAAGTTGAACGAGGTGATGTCTACGCCCA
AGCAAGCTGTGGGCTCCGCCGACGAATTCAGCTGGGACAGCGGCGTGCAG
ACAGCCTTGGACCGGCTGGACAATGAGCTGATCGGGCTGAAGCCGGTAAA
GTCCCGCGTCCGCGAGCTGGCGAGCATGCTAGTGGTGGACAAGATGCGGC
AGTCGATCGGTCTCGACCCCTTCATCTCCGACGGCCTCCACATGTGCTTC
ACGGGCGCCCCAGGCACGGGCAAGACGACGGTGGCATTCCGCATGGGGGA
CATTTTCAAGGCGATGGGCTACTGCCGGGCCGGCCACGTGGTGCTGGCGA
CGCGCGACACTTTGGTGGGCCAGTACGTCGGCCACACGGGGCCCAAGACC
AAGGAGGTGATCAAGCAGGCCATGGGcggcatcctcttcatcgaCGAGGC
CTATTATCTGTACAACGCCGGCAACGACCGCGACTACGGCGTGGAGTCCA
TCGAGATCCTCCTCAAGGTAATGGAGCAGCGCTCCTCCGACCTGATCGTC
ATCTTCGCGGGCTACAAGGACCGCATGGACCAGTTCTTCTCATACATCCC
CGGCATGCAGTCCCGCGTCAATCTCCACATCGACTTTCCGGATATGGAGC
CCGACGACCTGGTGGACGTGGGCAAGCTCATGTTCAACAACATGGAGTAC
AAGCTCGCCCCCGACGccgagcccgccctccgagaGTACGTCACGCTGCG
CAAGGAGAaactcttcttctccaatGCCCGCTCTGTCCGCAACGCAGTCG
ACCTGGCTCgcatggcggcggccaatAGGGTGTACGAgctggccacggcc
ccgggAGCCTCGGGGCTCATCACGCTGGACGAGCTGACGCAGGTCAAGAA
AGAGGACTTCGACGGGCTGCTGGACTTGGTCCGCAACGCCCCCGAGGGCG
CTATTCTGGCCTAA

Synonyms

Publications