EWM29165.1, cds1515 (CDS) Nannochloropsis gaditana

Overview
NameEWM29165.1
Unique Namecds1515
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:829310..829375 +
Alignment locationCM002457.1:829504..830694 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29165.1
Productrubisco expression protein
Orig transcript idgnl|cribi|Naga_100007g58.6492.mrna
GenecbbX
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:829310..829375 +
CM002457.1supercontigCM002457.1:829504..830694 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0009536plastid
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR003959ATPase_AAA_core
IPR027417P-loop_NTPase
IPR000641CbxX_CfqX
IPR000470CbxX_CfqX_mono
Homology
BLAST of EWM29165.1 vs. NCBI_GenBank
Match: gi|585111684|gb|EWM29164.1| (rubisco expression protein [Nannochloropsis gaditana] >gi|585111685|gb|EWM29165.1| rubisco expression protein [Nannochloropsis gaditana])

HSP 1 Score: 857.44 bits (2214), Expect = 0.000e+0
Identity = 418/418 (100.00%), Postives = 418/418 (100.00%), Query Frame = 0
Query:    1 MVTTMLKATLMGGCLFLASGFQMPAPRAMGRGLPIRMAEEGGSKHGGLVYDREKALSGDANAGNFRKLSDAMVRAEKEAKRNEEERRQREMAEELARQARAKKVAKLNEVMSTPKQAVGSADEFSWDSGVQTALDRLDNELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRAGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVDVGKLMFNNMEYKLAPDAEPALREYVTLRKEKLFFSNARSVRNAVDLARMAAANRVYELATAPGASGLITLDELTQVKKEDFDGLLDLVRNAPEGAILA 418
            MVTTMLKATLMGGCLFLASGFQMPAPRAMGRGLPIRMAEEGGSKHGGLVYDREKALSGDANAGNFRKLSDAMVRAEKEAKRNEEERRQREMAEELARQARAKKVAKLNEVMSTPKQAVGSADEFSWDSGVQTALDRLDNELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRAGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVDVGKLMFNNMEYKLAPDAEPALREYVTLRKEKLFFSNARSVRNAVDLARMAAANRVYELATAPGASGLITLDELTQVKKEDFDGLLDLVRNAPEGAILA
Sbjct:    1 MVTTMLKATLMGGCLFLASGFQMPAPRAMGRGLPIRMAEEGGSKHGGLVYDREKALSGDANAGNFRKLSDAMVRAEKEAKRNEEERRQREMAEELARQARAKKVAKLNEVMSTPKQAVGSADEFSWDSGVQTALDRLDNELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRAGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVDVGKLMFNNMEYKLAPDAEPALREYVTLRKEKLFFSNARSVRNAVDLARMAAANRVYELATAPGASGLITLDELTQVKKEDFDGLLDLVRNAPEGAILA 418          
BLAST of EWM29165.1 vs. NCBI_GenBank
Match: gi|399949600|gb|AFP65258.1| (CbbX protein (nucleomorph) [Chroomonas mesostigmatica CCMP1168])

HSP 1 Score: 396.356 bits (1017), Expect = 9.475e-133
Identity = 193/353 (54.67%), Postives = 262/353 (74.22%), Query Frame = 0
Query:   57 SGDANAGNFRKLSDAMVRAEKEAKRNEEERRQREMAEELARQARAKKVAKLNEVMSTPKQA-VGSADEFSWDSGVQTALDRLDNELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRAGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVDVGKLMFNNMEYKLAPDAEPALREYVTLRKEKLFFSNARSVRNAVDLARMAAANRVYELATAPGASGLITLDELTQVKKEDFDGLLDLV 408
            SG+  +    KL DA+  A+ EA++  EE  +R+ AEE  R A+  K+ +LN +   P+ A  G+ +E+ +  GV+  L++LDN+L+GL PVKSRVRE+A++LVVDK+R+++GLD  +   LHMCFTGAPGTGKTTVA RMG I + MGY R+GH+V+ATRD LVGQYVGHT PKTKEVIK+AMGG+L IDEAYYLYNA NDRDYG ESIEILL VME+   DL+V+ AGYKDRMD+FFS+IPGM SR+  HI+FP+ + ++L+ + K+M  ++EY++A +AEP   EY+  R +  +FSNAR+VRNAVD ARM AA R++  A  P + G+++  EL  ++K DF  + +L 
Sbjct:   43 SGNNESSENNKLKDALNDADIEARKIREEADKRKQAEERKRMAKQLKIDRLNAI---PEDAEAGTVEEYMYKDGVKEILEKLDNDLVGLIPVKSRVREIAALLVVDKLRRNLGLDTGVP-SLHMCFTGAPGTGKTTVAMRMGQILQRMGYSRSGHLVVATRDDLVGQYVGHTAPKTKEVIKKAMGGVLLIDEAYYLYNASNDRDYGQESIEILLNVMEENREDLVVVLAGYKDRMDKFFSFIPGMSSRIGNHIEFPNYQAEELLSIAKVMCRDLEYEMAIEAEPVFFEYIKKRMKMPYFSNARTVRNAVDRARMRAAIRLFNKAFDPSSDGMVSKQELMTLEKNDFVSVEELT 391          
BLAST of EWM29165.1 vs. NCBI_GenBank
Match: gi|162606432|ref|XP_001713246.1| (CbbX protein homolog [Guillardia theta] >gi|17433081|sp|Q9SCC7.1|CBBX_GUITH RecName: Full=Protein cbbX homolog, chloroplastic; Flags: Precursor >gi|6687646|emb|CAB65663.1| CbbX protein homologue [Guillardia theta] >gi|12580712|emb|CAC27030.1| CbbX protein homolog [Guillardia theta])

HSP 1 Score: 393.275 bits (1009), Expect = 5.409e-132
Identity = 188/332 (56.63%), Postives = 253/332 (76.20%), Query Frame = 0
Query:   78 EAKRNEEERRQREMAEELARQARAKKVAKLNEVMSTPKQA-VGSADEFSWDSGVQTALDRLDNELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRAGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVDVGKLMFNNMEYKLAPDAEPALREYVTLRKEKLFFSNARSVRNAVDLARMAAANRVYELATAPGASGLITLDELTQVKKEDFDGLLDLV 408
            EA++ +EE  +R+   E  R  +  K+ +LN +   P+ A  G+ +EF +  GV+  L++LDN+L+GL PVKSRVRE+A++LVVDK+R+++GLD  +   LHMCFTGAPGTGKTTVA RMG I + MGYCR+GH+V+ATRD LVGQYVGHT PKTKEVIK+AMGG+L IDEAYYLYNA NDRDYG ESIEILL VME+   DL+V+ AGYKDRMD+FFS+IPGM SRV  HI+FP+ E ++L+ + K+M  ++EY+++ DAEP   EY+  R    +FSNAR+VRNAVD ARM AA R++  AT+  ++GL++  +L  ++KEDF  + +L+
Sbjct:   35 EARKIKEEAERRKQQAERNRMQKQMKIDRLNAI---PEDAEAGTVEEFMYKDGVKEILEKLDNDLVGLVPVKSRVREIAALLVVDKLRRNLGLDTSVP-SLHMCFTGAPGTGKTTVAMRMGQILQRMGYCRSGHLVVATRDDLVGQYVGHTAPKTKEVIKKAMGGVLLIDEAYYLYNASNDRDYGQESIEILLNVMEENREDLVVVLAGYKDRMDKFFSFIPGMSSRVGNHIEFPNYEAEELLSIAKVMCRDLEYEMSKDAEPIFFEYIKKRMTMPYFSNARTVRNAVDRARMRAAIRLFNQATSGNSNGLVSKKQLMTLEKEDFVSVEELI 362          
BLAST of EWM29165.1 vs. NCBI_GenBank
Match: gi|145693249|gb|ABP93410.1| (cbbx protein [Saccharina japonica] >gi|295922219|gb|ADG62366.1| CbbX [Saccharina japonica])

HSP 1 Score: 393.275 bits (1009), Expect = 2.729e-131
Identity = 206/395 (52.15%), Postives = 272/395 (68.86%), Query Frame = 0
Query:   19 SGFQMPAPRAMGRGLPIRMA------EEGGSKHGGLVYDREKALSGDANAGNFRKLSDAMVRAEKEAKRNEEERRQREMAEELARQARAKKVAKLNEVMSTPKQAVGSADEFSWDSGVQTALDRLDNELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRAGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVDVGKLMFNNMEYKLAPDAEPALREYVTLRKEKLFFSNARSVRNAVDLARMAAANRVYELA-TAPGASGLITLDELTQVKKEDFDGLLD 406
            + FQ+PA      G   R A        G  +  GL Y+ +K  + + N GN+RKLS+A+  A+ EA+ N EE  +RE A E+ R+ R KK+  + ++  + +  VG+ +EF +  GV+  LD+LD++L+GL PVK RVR++A++LV+DKMR  +G D  +   LHMCFTGAPGTGKTTVA RMG I + MGYCR GHVV+ATRD LVGQYVGHT PKTKE+IK+A GGIL +DEAYYLYNA ND+DYG ESIEILL VME++  DLIV  AGYKDRMD+FFSYIPGM SRV  HIDFP+   D+LV++  +M  ++EY +   A    ++Y+  R +  FFSNAR+VRNA+D ARM +A RV+  A  A GA G+++  +L  +   DF  LLD
Sbjct:   18 AAFQIPAVTRQVSGASSRTAISMAQPSVGTGQGKGLDYNPDK-FTDEKNKGNYRKLSEALEAADVEARINAEEADKRERASEIRREERLKKIKFMADMDDSIE--VGTVEEFMFKEGVRDILDKLDSDLVGLVPVKLRVRQIAALLVLDKMRGKLGFDTAVP-SLHMCFTGAPGTGKTTVALRMGQILQRMGYCRQGHVVVATRDDLVGQYVGHTAPKTKEMIKKAFGGILLVDEAYYLYNAANDKDYGQESIEILLNVMEEQKEDLIVTLAGYKDRMDRFFSYIPGMSSRVGNHIDFPNYLTDELVEIAIVMARDLEYFMDDSALAVFKQYIEKRMKFPFFSNARTVRNAMDRARMNSAIRVFNDAIIATGAGGMVSEKDLAVITDADFQVLLD 408          
BLAST of EWM29165.1 vs. NCBI_GenBank
Match: gi|160331319|ref|XP_001712367.1| (cbbx [Hemiselmis andersenii] >gi|159765815|gb|ABW98042.1| cbbx [Hemiselmis andersenii])

HSP 1 Score: 391.349 bits (1004), Expect = 4.785e-131
Identity = 194/363 (53.44%), Postives = 264/363 (72.73%), Query Frame = 0
Query:   56 LSGDANAGNFRKLSDAMVRAEKEAKRNEEERRQREMAEELARQARAKKVAKLNEVMSTPKQA-VGSADEFSWDSGVQTALDRLDNELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRAGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVDVGKLMFNNMEYKLAPDAEPALREYVTLRKEKLFFSNARSVRNAVDLARMAAANRVYELATAPGASGLITLDELTQVKKEDFDGLLDLVRNAPEGAIL 417
            L    N+ N  KL+DA+  A+ EA++  EE  +R+  +E  R  +  K+ +LN +   P+ A  G+ +EF +  GV+  L++LD +L+GL PVKSRVRE+A++LVVDK+R+++GLD  +   LHMCFTGAPGTGKTTVA RMG I + MGY R+GH+V+ATRD LVGQYVGHT PKTKEVIK+AMGG+L IDEAYYLYNA NDRDYG ESIEILL VME+   D++++ AGYKDRMD+FFS+IPGM SRV  HI+FP+ EP++L+ + K+M  ++EY+++ DAEP   EY+  R    +FSNAR+VRNAVD ARM AA R++  A    + G+++  EL  ++K DF  + +L+    E AI+
Sbjct:   33 LKASDNSDN-SKLTDALKEADIEARKIREEAERRKQEDEKERMKKQMKIDRLNAI---PEDAEAGTVEEFMYKDGVKEILEKLDTDLVGLIPVKSRVREIAALLVVDKLRRNLGLDTSVP-SLHMCFTGAPGTGKTTVAMRMGQILQRMGYSRSGHLVVATRDDLVGQYVGHTAPKTKEVIKKAMGGVLLIDEAYYLYNASNDRDYGQESIEILLNVMEENREDIVIVLAGYKDRMDKFFSFIPGMSSRVGNHIEFPNYEPEELLSIAKVMCRDLEYEMSVDAEPIFFEYIKKRMTMPYFSNARTVRNAVDRARMRAAIRLFSKAFDQSSDGMVSKTELMTLEKNDFVSVEELIERG-ENAIV 389          
BLAST of EWM29165.1 vs. NCBI_GenBank
Match: gi|88770680|gb|ABD51943.1| (CbbX protein, partial (nucleomorph) [Rhodomonas salina])

HSP 1 Score: 389.037 bits (998), Expect = 4.418e-130
Identity = 198/353 (56.09%), Postives = 262/353 (74.22%), Query Frame = 0
Query:   56 LSGDANAGNFRKLSDAMVRAEKEAKRNEEERRQREMAEELARQARAKKVAKLNEVMSTPKQA-VGSADEFSWDSGVQTALDRLDNELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRAGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVDVGKLMFNNMEYKLAPDAEPALREYVTLRKEKLFFSNARSVRNAVDLARMAAANRVYELATAPGASGLITLDELTQVKKEDFDGLLDL 407
            LS   N  N  ++SDA+  ++ EA++  EE  +R   EE  R  +  K+ +LN +   P+ A  G+ +EF +  GV+  L++LDN+L+GL PVKSRV+E+A++LVVDK+R+++GLD  +   LHMCFTGAPGTGKTTVA RMG I + MGY R GH+V+ATRD LVGQYVGHT PKTKEVIK+AMGG+L IDEAYYLYNA NDRDYG ESIEILL VME+   DL+V+ AGYKDRMD+FFS+IPGM SRV  HI+FP+ EP++L+ + K+M  ++EY++APDAEP   EY+  R    FFSNAR+VRNAVD ARM AA R++  AT  G++G+++  EL  ++K DF  + +L
Sbjct:   34 LSASGNQQN-NEVSDALNESDIEARKIREEAERRRQEEERIRMKKQMKIDRLNAI---PEDAEAGTVEEFMYKDGVKDILEQLDNDLVGLVPVKSRVKEIAALLVVDKLRRNLGLDTGVP-SLHMCFTGAPGTGKTTVAMRMGQILQRMGYSRQGHLVVATRDDLVGQYVGHTAPKTKEVIKKAMGGVLLIDEAYYLYNASNDRDYGQESIEILLNVMEENREDLVVVLAGYKDRMDKFFSFIPGMSSRVGNHIEFPNYEPEELLQIAKVMCRDLEYEIAPDAEPVFFEYIKKRMTMSFFSNARTVRNAVDRARMRAAIRLFNKATDKGSNGMVSKQELMTLEKSDFVSVEEL 381          
BLAST of EWM29165.1 vs. NCBI_GenBank
Match: gi|922887644|gb|KOO53179.1| (cbbx protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 383.259 bits (983), Expect = 1.604e-127
Identity = 200/388 (51.55%), Postives = 264/388 (68.04%), Query Frame = 0
Query:   19 SGFQMPAPRAMGRGLPIRMAEEGGSKHGGLVYDREKALSGDANAGNFRKLSDAMVRAEKEAKRNEEERRQREMAEELARQARAKKVAKLNEVMSTPKQAVGSADEFSWDSGVQTALDRLDNELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRAGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVDVGKLMFNNMEYKLAPDAEPALREYVTLRKEKLFFSNARSVRNAVDLARMAAANRVYELATAPGASGLITLDELTQVKKEDFDGLLD 406
            S  +M AP   GRG        G     G+  D + +L  D   GN+R+LSDA+  ++ E +  E+    RE A    ++AR +K+  L ++  + +   G+ D+F +  GV+  L +LD +LIGL PVK RVRE+AS+LVVDKMR  +GL+  +   LHM FTGAPGTGKTTVA RMG I + MGYCR GHVV+ATRD LVGQYVGHT PKTKE++K+AMGGIL +DEAYYLYNA NDRDYG ESIEILL VME    D+IV+ AGYKDRMD+F+S+IPGM SR+  HI+FP+ E D+LV +GK+M  ++EY++   A  A REY++ R    FFSNAR+VRNA+DLARM +A R++    +PG++G +   EL  +   DF  + D
Sbjct:   30 SALRMKAP-IDGRG-------PGSGITEGVSADSKASL--DPAKGNYRRLSDALKTSDLERRLEEDAIAMREDALRRKKEARERKIMLLQKIPDSMQ--AGTVDDFMYKEGVKDILQKLDYDLIGLLPVKQRVREIASLLVVDKMRLKLGLETSVP-SLHMGFTGAPGTGKTTVALRMGQILQRMGYCRTGHVVVATRDDLVGQYVGHTAPKTKEMVKKAMGGILLVDEAYYLYNAANDRDYGQESIEILLNVMENNKEDIIVVLAGYKDRMDKFYSFIPGMNSRIGNHIEFPNYELDELVQIGKVMCRDLEYEMDASAIEAFREYMSRRMRMPFFSNARTVRNAIDLARMKSAVRIFNEKMSPGSNGDVQDFELMTITAADFPVITD 404          
BLAST of EWM29165.1 vs. NCBI_GenBank
Match: gi|551623113|ref|XP_005791855.1| (hypothetical protein EMIHUDRAFT_351387 [Emiliania huxleyi CCMP1516] >gi|485645874|gb|EOD39426.1| hypothetical protein EMIHUDRAFT_351387 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 377.867 bits (969), Expect = 5.031e-127
Identity = 178/292 (60.96%), Postives = 228/292 (78.08%), Query Frame = 0
Query:  117 AVGSADEFSWDSGVQTALDRLDNELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRAGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVDVGKLMFNNMEYKLAPDAEPALREYVTLRKEKLFFSNARSVRNAVDLARMAAANRVYELATAPGASGLITLDELTQVKKEDF----DGL 404
            A G+ D+F +  GV+  L++LD +LIGLKPVK RVRE+AS+LVVDKMR  +GL+  +   LHM FTGAPGTGKTTVA RMG I + MGYCR GHVV+ATRD LVGQYVGHT PKTKE++K+AMGGIL +DEAYYLYNA NDRDYG ES+EILL VME    D+IV+ AGYKD+MD F+ +IPGM SR+  HI+FPD E ++LV++GK++   +EYKL P AEPAL++Y++ RK   FF+NAR+VRNA+DLARM +A RV+E   +P ++G+++ DEL  +  +DF    DGL
Sbjct:    9 AAGTVDDFMYKEGVKDILEKLDYDLIGLKPVKQRVREIASLLVVDKMRLKLGLETSVP-SLHMGFTGAPGTGKTTVALRMGQILQRMGYCRTGHVVVATRDDLVGQYVGHTAPKTKEMVKKAMGGILLVDEAYYLYNAANDRDYGQESVEILLNVMENNKEDIIVVLAGYKDKMDAFYGFIPGMASRIGNHIEFPDYEDEELVEIGKVLRRELEYKLGPGAEPALKDYLSKRKRMPFFANARTVRNAIDLARMGSAIRVFEEKMSPSSNGMVSEDELMTIMPDDFPAPEDGL 299          
BLAST of EWM29165.1 vs. NCBI_GenBank
Match: gi|330038677|ref|XP_003239667.1| (CbbX protein [Cryptomonas paramecium] >gi|327206591|gb|AEA38769.1| CbbX protein (nucleomorph) [Cryptomonas paramecium])

HSP 1 Score: 379.407 bits (973), Expect = 5.577e-127
Identity = 184/329 (55.93%), Postives = 241/329 (73.25%), Query Frame = 0
Query:   74 RAEKEAKRNEEERRQREMAEELARQARAKKVAKLNEVMSTPK-QAVGSADEFSWDSGVQTALDRLDNELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRAGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVDVGKLMFNNMEYKLAPDAEPALREYVTLRKEKLFFSNARSVRNAVDLARMAAANRVYELATAPGASGLITLDELTQVKKEDF 401
            + E EA   E E+R+ E         R +K  +L+ + + P  +  G+ +EF +  GV+  L +LD +LIGLKPVK +V+E+A++LVVDK+R+++GLD  +   LHMCFTG+PGTGKTTVA RMG I + MGY R+GH+VLATRD LVGQY+GHT PKTKEVIK+AMGG+L IDEAYYLYNA NDRDYG ESIEILL VME+   DL+VI AGYKDRMD+FFSYIPGM SR+  HI+FPD + D+LV + K+M  ++EY+++P+AEP    Y+  R    FFSNAR+VRNAVD ARM AA R++  AT   + G ++  +L  ++KEDF
Sbjct:    5 QVESEAFLKEVEKRKIE-----NEYIRLQKKMRLSRLQAIPDDEEAGTVEEFMYKDGVKEILKKLDEDLIGLKPVKDQVKEIAALLVVDKLRRNLGLDTSVP-SLHMCFTGSPGTGKTTVAMRMGQILQRMGYSRSGHLVLATRDDLVGQYIGHTAPKTKEVIKKAMGGVLLIDEAYYLYNASNDRDYGQESIEILLNVMEENREDLVVILAGYKDRMDKFFSYIPGMSSRIGNHIEFPDYKVDELVSIAKIMCRDLEYEMSPEAEPVFYNYIKTRMNMPFFSNARTVRNAVDRARMKAAIRLFNKATDVQSDGFVSKKDLMTLEKEDF 327          
BLAST of EWM29165.1 vs. NCBI_GenBank
Match: gi|299472954|emb|CBN77355.1| (cbbX protein [Ectocarpus siliculosus])

HSP 1 Score: 381.719 bits (979), Expect = 1.116e-126
Identity = 206/397 (51.89%), Postives = 266/397 (67.00%), Query Frame = 0
Query:   12 GGCLFLASGFQMPAPRAMGR-GLPIRMAEEGGSKHGGLVYDREKALSGDANAGNFRKLSDAMVRAEKEAKRNEEERRQREMAEELARQARAKKVAKLNEVMSTPKQAVGSADEFSWDSGVQTALDRLDNELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRAGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVDVGKLMFNNMEYKLAPDAEPALREYVTLRKEKLFFSNARSVRNAVDLARMAAANRVYELA-TAPGASGLITLDELTQVKKEDFDGLLD 406
            G   F    F  PA  A  R  L +     G      L Y+ EK    + NAGN+RKLS+A+  A+ EA+  EE   QR  A E+ R+AR  K+ K  E M    + VG+ +EF +  GV+  L++LD++L+GL PVK RVR++A++LV+DKMR  +G D  +   LHMCFTGAPGTGKTTVA RMG I + MGYCR GHVV+ATRD LVGQYVGHT PKTKE+IK+A GGIL +DEAYYLYNA ND+DYG ESIEILL VME++  DLIV  AGYKDRMD+FFSYIPGM SR+  HIDFP+   D+LV++  +M  +++Y +   A    +EY+  R +  FFSNAR+VRNA+D ARM +A RV+  A  + G  G+++  +L  +   DF  LLD
Sbjct:   16 GTAAFQIPVFTRPATGASSRSALSMAQPTVGTGTGKSLEYNPEK-YGDEKNAGNYRKLSEALEAADVEARLAEEAADQRARAGEIRREARMAKI-KFMEDMPDNTE-VGTVEEFMFKEGVRDILEKLDSDLVGLIPVKLRVRQIAALLVLDKMRGKLGFDTSVP-SLHMCFTGAPGTGKTTVALRMGQILQRMGYCRQGHVVVATRDDLVGQYVGHTAPKTKEMIKKAFGGILLVDEAYYLYNAANDKDYGQESIEILLNVMEEQKDDLIVTLAGYKDRMDRFFSYIPGMSSRIGNHIDFPNYLVDELVEIAMVMARDLQYFMDDAALAVFKEYIETRMKFPFFSNARTVRNAMDRARMNSAIRVFNNAVVSEGDGGMVSEKDLAVICDADFQVLLD 408          
The following BLAST results are available for this feature:
BLAST of EWM29165.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111684|gb|EWM29164.1|0.000e+0100.00rubisco expression protein [Nannochloropsis gadita... [more]
gi|399949600|gb|AFP65258.1|9.475e-13354.67CbbX protein (nucleomorph) [Chroomonas mesostigmat... [more]
gi|162606432|ref|XP_001713246.1|5.409e-13256.63CbbX protein homolog [Guillardia theta] >gi|174330... [more]
gi|145693249|gb|ABP93410.1|2.729e-13152.15cbbx protein [Saccharina japonica] >gi|295922219|g... [more]
gi|160331319|ref|XP_001712367.1|4.785e-13153.44cbbx [Hemiselmis andersenii] >gi|159765815|gb|ABW9... [more]
gi|88770680|gb|ABD51943.1|4.418e-13056.09CbbX protein, partial (nucleomorph) [Rhodomonas sa... [more]
gi|922887644|gb|KOO53179.1|1.604e-12751.55cbbx protein [Chrysochromulina sp. CCMP291][more]
gi|551623113|ref|XP_005791855.1|5.031e-12760.96hypothetical protein EMIHUDRAFT_351387 [Emiliania ... [more]
gi|330038677|ref|XP_003239667.1|5.577e-12755.93CbbX protein [Cryptomonas paramecium] >gi|32720659... [more]
gi|299472954|emb|CBN77355.1|1.116e-12651.89cbbX protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1518rna1518Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications