rna1516, rna1516 (mRNA) Nannochloropsis gaditana

Overview
Namerna1516
Unique Namerna1516
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1050
Alignment locationCM002457.1:826834..828858 -

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Properties
Property NameValue
Productdead deah box rna helicase
Orig transcript idgnl|cribi|Naga_100007g59.6436.mrna
Orig protein idgnl|cribi|Naga_100007g59.6436
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:826834..828858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g59gene1462Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29109.1cds1513Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1516rna1516-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1516 ID=rna1516|Name=rna1516|organism=Nannochloropsis gaditana|type=mRNA|length=1050bp
ATGTGTTTTCCCATAGACCTGGGTAAAGCTCACGTCTTAATTGGAGAAAG
AATACAGTCTTCGTATCGCACGATCGCCTCGCTTTTTTGTGACATGAGGT
GCAGCCTCCTCCGTTCGTCGTGTTGCTGTCTTCTTTTGTCTGCCGTGGTG
CTTTGCCGCGGATGGATATCAGCAAATGCAGAGGTGGCCATCGTGGCCTC
CCCAGAAGCCGCCGGCATCACGCAGGTTGCTCGTATGGTAATGGAGGTCA
GGGGAGGATTGAAGCCTGCAAGAGGTTCCAAGGGGAAAAACAATGGTAAG
ATATCAAACGGGAATAATGCGGGGACTAAACTCGGTCCAAAGGCACCGCC
GCCTGTACATGTGGACGACGACGACGACGACGACGAGGAGCAGGAGGAGG
AGTGGGGCTCGGAAGAAGATGAAGATTGTATGGAGGAGGAGGAGGAGTTC
GGAGAGCTGGCGGAAGAAAGAGAAGGGAAATACTACGAAAGTGGACGCAG
TGGCGGCAGCAGGCAGCGGAATGAGTGGCATTACGCGGACAGGAGACGGC
GACTGGCTGCCCGACGACGAGCGTCCCACGGGATGGCGGACTTGTTCAAA
GGAGCGGCGAAAATCACCAGCAGTTCGGTAGGAAAGGTGGCTGGTCTCTT
TCAGCCGAATAAATACGTGAGTCTGCGGGAAGTGCTGGGCGTCTGGAAAG
TAAAGCAAAAGATTACTGAGCCGGGGGGGGAGGTAGAACGTTGCGAGGCG
ACCTTGGAGATCCGGAAGGACGGAACGGTCGTCACATTTTTCGAGGGAAA
GGAATTGGTCTCTGAGTTTCTATTCAAGGAGCGGCAGTGGCCGCGCTCCT
GCATCATCGAGTTCGAAGCCCGGGCGTTCCAGGGTCCGTACGACAGGGAG
CCACAGCCCAAGTTCTACAAGGGATACGTGCGCCGGAGCCTGATGAACGC
CGGCTCTGTCCGGCTTGAGGGTAAAATCTACGACGTGCAGGGGACTTTCT
TTTGGCGCCAGAAGCGCCAAGTGGGGAAGTTCCGGGCGGTGAAGAGATGA
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protein sequence of rna1516

>rna1516-protein ID=rna1516-protein|Name=rna1516|organism=Nannochloropsis gaditana|type=polypeptide|length=636bp
MNGSSKRRRQEVDEEDEKLKALLQSSDDYVPYVSLKHRQGLSRNGKDAGH
EVEARDQQERTDEDTDNSGEPVADGILKSRLDLDAEVTATKRSLLEVTEE
MKKKREHMDPTLLKLEAQKQQEQRILGEANQVQTNALQSAVERAQGVQYS
QSLKTGWTPPSHVRAMSKADCAAFRKKWHIICEGVDLPPPIKNFRDMKFP
APIMEAMARKGITKPTPIQVQGLPVLLSGRDMVGIAFTGSGKTMTFGLPL
VMLALAEEKKMPLEGGEGPVGIILCPSRELAGQTFEVLDYYCQALGRGGF
PRPRALLCIGGMDKRAQIDAVQRQGVHIVVATPGRLRDLLHLKKMSLSLC
RYFCLDEADRMLDLGFDEEVAEIMNHFKQQRQTLLFSATMPLKIQDFAKE
TLVRPVLVNVGRAGAANLDVVQEVELVKKDAKIVYLLQCLQKTAPPVMIF
CERKSDVDNIHEYLLLKGVDAVAIHGGKDQAERDEAIREFKGGVKDVLVA
TDVAAKGLDFPNIEHVINFDMPHEIENYVHRIGRTGRCGKTGVATTFINA
EVEQSTLLDLKHLLIEAKQRVPPVLEALEDPDQDLTGAIDGVRGCAFCGG
LGHRITDCPKIDKDARRLGSGRRDMLISSGGYGGEY
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mRNA from alignment at CM002457.1:826834..828858-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1516 ID=rna1516|Name=rna1516|organism=Nannochloropsis gaditana|type=mRNA|length=2025bp|location=Sequence derived from alignment at CM002457.1:826834..828858- (Nannochloropsis gaditana)
AGGGGAAAGTTTGGGAGGATTCGGGCCCTTGCTCCCGCTCCGTCAAGCAA
TGAATGGAAGCAGCAAGCGACGACGGCAGGAAGTAGACGAGGAGGACGAG
AAACTGAAAGCTTTGTTGCAAAGTTCCGATGATTACGTACCTTACGTGTC
ATTGAAGCATCGTCAAGGCCTCTCGCGGAATGGGAAAGACGCGGGCCACG
AGGTCGAGGCGCGAGACCAGCAGGAGCGCACGGACGAGGACACCGACAAC
AGCGGAGAGCCCGTGGCTGATGGCATATTGAAGAGTCGGCTGGATTTAGA
CGCAGAGGTGACCGCAACCAAGCGTAGCCTCTTGGAGGTGACGGAGGAAA
TGAAAAAAAAACGAGAACACATGGACCCGACCCTGCTGAAGTTAGAGGCG
CAGAAACAGCAAGAGCAGCGGATATTGGGGGAAGCAAATCAAGTGCAAAC
CAACGCCTTGCAATCAGCGGTAGAGCGCGCCCAAGGGGTTCAATACAGCC
AAAGCCTCAAGACCGGGTGGACCCCGCCGTCCCACGTGCGCGCCATGAGT
AAGGCTGACTGCGCGGCATTCCGCAAGAAGTGGCACATTATCTGTGAGGG
CGTGGATCTGCCACCGCCTATCAAGAATTTCAGAGATATGAAATTTCCCG
CGCCAATCATGGAGGCGATGGCAAGGAAGGGGATCACGAAGCCCACGCCC
ATCCAGGTCCAGGGCCTGCCTGTGCTCCTGAGCGGGCGGGACATGGTGGG
CATCGCCTTCACCGGCTCGGGCAAGACCATGACCTTCGGGCTGCCTCTGG
TCATGCTGGCCTTGGCCGAGGAGAAGAAGATGCCGCTCGAGGGCGGAGAG
GGGCCGGTGGGCATCATCCTTTGTCCCTCGCGGGAGCTGGCGGGTCAGAC
CTTCGAGGTCCTGGACTACTACTGCCAGGCTTTGGGTCGAGGGGGGTTCC
CGCGGCCCCGGGCTTTGCTGTGCATCGGCGGCATGGACAAGCGCGCGCAG
ATCGATGCCGTTCAGCGGCAGGGGGTGCACATCGTGGTGGCGACGCCGGG
GCGGCTGCGGGACCTACTGCACCTGAAGAAGATGAGCCTGAGCCTGTGCC
GGTACTTCTGCCTGGACGAGGCCGACCGGATGCTGGACTTGGGCTTCGAC
GAGGAGGTGGCGGAGATTATGAACCACTTCAAGCAGCAACGACAGACCCT
TCTCTTCTCGGCGACGATGCCCCTGAAGATCCAAGACTTCGCGAAAGAGA
CGCTCGTGCGCCCGGTGCTCGTGAATGTGGGTCGCGCGGGCGCCGCCAAT
CTGGACGTCGTCCAGGAGGTGGAGCTGGTCAAGAAGGACGCCAAGATCGT
TTACCTCCTCCAGTGCCTGCAGAAGACGGCCCCGCCGGTCATGATCTTCT
GCGAGCGGAAAAGCGACGTGGACAACATCCACGAGTACCTGCTGCTCAAG
GGCGTGGACGCGGTGGCGATCCACGGGGGCAAGGACCAGGCAGAGCGGGA
CGAGGCCATCCGAGAGTTCAAAGGCGGCGTCAAAGACGTGCTGGTGGCCA
CGGACGTGGCGGCCAAGGGCCTGGACTTCCCCAACATCGAGCACGTGATC
AATTTCGACATGCCCCACGAGATTGAGAACTACGTGCATCGGATAGGCCG
CACAGGCCGATGCGGAAAGACGGGCGTCGCCACCACCTTCATCAACGCGG
AGGTGGAGCAAAGCACCCTGCTGGACCTGAAGCACCTGCTTATTGAGGCC
AAGCAGCGGGTGCCGCCGGTGCTCGAGGCCTTGGAGGACCCGGACCAGGA
CTTGACGGGCGCCATTGACGGTGTGCGGGGTTGCGCCTTCTGCGGCGGAC
TCGGGCATCGGATCACGGACTGCCCCAAGATCGACAAGGACGCCCGCAGG
TTGGGCTCGGGGAGGCGGGATATGCTCATATCGTCTGGGGGCTACGGGGG
AGAGTATTAGGCTGTACATGCGATTTGTTCATGAGGTTCTGTATTGACAA
AGAAGAGAAGCGCAGCTTAGGGATC
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Coding sequence (CDS) from alignment at CM002457.1:826834..828858-

>rna1516 ID=rna1516|Name=rna1516|organism=Nannochloropsis gaditana|type=CDS|length=1911bp|location=Sequence derived from alignment at CM002457.1:826834..828858- (Nannochloropsis gaditana)
ATGAATGGAAGCAGCAAGCGACGACGGCAGGAAGTAGACGAGGAGGACGA
GAAACTGAAAGCTTTGTTGCAAAGTTCCGATGATTACGTACCTTACGTGT
CATTGAAGCATCGTCAAGGCCTCTCGCGGAATGGGAAAGACGCGGGCCAC
GAGGTCGAGGCGCGAGACCAGCAGGAGCGCACGGACGAGGACACCGACAA
CAGCGGAGAGCCCGTGGCTGATGGCATATTGAAGAGTCGGCTGGATTTAG
ACGCAGAGGTGACCGCAACCAAGCGTAGCCTCTTGGAGGTGACGGAGGAA
ATGAAAAAAAAACGAGAACACATGGACCCGACCCTGCTGAAGTTAGAGGC
GCAGAAACAGCAAGAGCAGCGGATATTGGGGGAAGCAAATCAAGTGCAAA
CCAACGCCTTGCAATCAGCGGTAGAGCGCGCCCAAGGGGTTCAATACAGC
CAAAGCCTCAAGACCGGGTGGACCCCGCCGTCCCACGTGCGCGCCATGAG
TAAGGCTGACTGCGCGGCATTCCGCAAGAAGTGGCACATTATCTGTGAGG
GCGTGGATCTGCCACCGCCTATCAAGAATTTCAGAGATATGAAATTTCCC
GCGCCAATCATGGAGGCGATGGCAAGGAAGGGGATCACGAAGCCCACGCC
CATCCAGGTCCAGGGCCTGCCTGTGCTCCTGAGCGGGCGGGACATGGTGG
GCATCGCCTTCACCGGCTCGGGCAAGACCATGACCTTCGGGCTGCCTCTG
GTCATGCTGGCCTTGGCCGAGGAGAAGAAGATGCCGCTCGAGGGCGGAGA
GGGGCCGGTGGGCATCATCCTTTGTCCCTCGCGGGAGCTGGCGGGTCAGA
CCTTCGAGGTCCTGGACTACTACTGCCAGGCTTTGGGTCGAGGGGGGTTC
CCGCGGCCCCGGGCTTTGCTGTGCATCGGCGGCATGGACAAGCGCGCGCA
GATCGATGCCGTTCAGCGGCAGGGGGTGCACATCGTGGTGGCGACGCCGG
GGCGGCTGCGGGACCTACTGCACCTGAAGAAGATGAGCCTGAGCCTGTGC
CGGTACTTCTGCCTGGACGAGGCCGACCGGATGCTGGACTTGGGCTTCGA
CGAGGAGGTGGCGGAGATTATGAACCACTTCAAGCAGCAACGACAGACCC
TTCTCTTCTCGGCGACGATGCCCCTGAAGATCCAAGACTTCGCGAAAGAG
ACGCTCGTGCGCCCGGTGCTCGTGAATGTGGGTCGCGCGGGCGCCGCCAA
TCTGGACGTCGTCCAGGAGGTGGAGCTGGTCAAGAAGGACGCCAAGATCG
TTTACCTCCTCCAGTGCCTGCAGAAGACGGCCCCGCCGGTCATGATCTTC
TGCGAGCGGAAAAGCGACGTGGACAACATCCACGAGTACCTGCTGCTCAA
GGGCGTGGACGCGGTGGCGATCCACGGGGGCAAGGACCAGGCAGAGCGGG
ACGAGGCCATCCGAGAGTTCAAAGGCGGCGTCAAAGACGTGCTGGTGGCC
ACGGACGTGGCGGCCAAGGGCCTGGACTTCCCCAACATCGAGCACGTGAT
CAATTTCGACATGCCCCACGAGATTGAGAACTACGTGCATCGGATAGGCC
GCACAGGCCGATGCGGAAAGACGGGCGTCGCCACCACCTTCATCAACGCG
GAGGTGGAGCAAAGCACCCTGCTGGACCTGAAGCACCTGCTTATTGAGGC
CAAGCAGCGGGTGCCGCCGGTGCTCGAGGCCTTGGAGGACCCGGACCAGG
ACTTGACGGGCGCCATTGACGGTGTGCGGGGTTGCGCCTTCTGCGGCGGA
CTCGGGCATCGGATCACGGACTGCCCCAAGATCGACAAGGACGCCCGCAG
GTTGGGCTCGGGGAGGCGGGATATGCTCATATCGTCTGGGGGCTACGGGG
GAGAGTATTAG
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Synonyms
Publications