rna1515, rna1515 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1515
Unique Name	rna1515
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3152
Alignment location	CM002457.1:825493..826766 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100007g60.6484.mrna
Orig protein id	gnl\|cribi\|Naga_100007g60.6484
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:825493..826766 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g60	gene1461	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1515	rna1515-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29157.1	cds1512	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:825493..826766+
coding sequence from alignment at CM002457.1:825493..826766+

mRNA sequence

>rna1515 ID=rna1515|Name=rna1515|organism=Nannochloropsis gaditana|type=mRNA|length=3152bp
GTAGGTTGGCTTTAATTCACCATTAATCTCTATAAACAAACACCAGAGGC
CTCAAGATCCTCTTCATAATGTCTGCGACATCAGGCACTCGATTCCTGGT
GTTTATTACGGGTGCAAGCCGTGGTTTTGGAAGATGCTTAGCCCTTGAAG
CTGCCCGCAAATGGGGCCCTGCTGTGGACATGCATCTTATTGCACGAAAC
GCGGAGGCACTCACGGCAGTGAAACGTGATATTGAGGCATCTTTATCAGA
CCAAAGTAAAATTGGTGTACGTGTATGGACATGGCCTTTTGATTTGGGAA
ACCTAGAGACGTTGGAGCCCAATTTTGCTAGAATTTTTGCCACCGTTGAC
GAATTTTCTGCAGAGCAAGAATCGACAGCAATGATAATGCATAAGTATGG
CAATGTCTACCTTTTCAATAACGCAGGATCAGTGGGACCAATAGCGTATG
CGAAAGATCTTTGCACTGACTTGCCGGCCCTGCGTCAGTCTTTGGATCTG
AACTTGACATCGTCAATCTTGATAACTTCCCTCTTCCTTCGCCGTTTTTG
CACCTTATCTTCGCCTTCAAACAAAGTTCCTGCTTTATTCATCATCAACA
TTTCCTCAATGGCTGCCATTCAACCTTTTCATTCGTGGGGTGTGTACTGC
GCGGGCAAAGCTGCGAGAGACATGTTTCTGCAAGTGGTCGCACAGGAGCA
CCAGGGAGAAGGAAGTGCGCGGGGGGAAGGTTCGATGGCAGGCGGAATGT
CTGTGCACTTAAAAACTCTCAACTATGCACCTGGCCCTCTCGACACAGAT
ATGCAGATAGAGCTGCGAGAGAGCGAATCGATCCATCCGCCGACGCGTGA
GTGGTCAGAGAAGGCCTTCAGAGAGGGCTGGCTTGTGAGGCCGGAGGAAT
CGGCTTCTAAATGCCTTCGTATCTTGACTAAGAACGACTTTAAGAGTGGG
GTGCACATTGACTATTACGATGATATGTAGAGAGCCTAAGCGATTAGCGT
GTCGCGACAAAATTTGAATGTGTGCATTAGAACAATTTGGTGGCACATCC
TTCATTTATCTAGATTTGCGGTTACAGTAGTAGAGTAGACAAGTGGGACA
TTTGCTAAGCCATCAACACCCAATTGATGGTCTGAGCTTTCCATCGTAGC
CGCCTCACGCGTCATCTATCGCATCGAAACGCGTCGGCTTTCCTCCTACC
TTGAGCGACAGTCCTCACAGCAGCTCGTGCCACTTAGTCCTTCCCGGCAC
CCTTTCTTCCTGTTGAACATCTCTCTCACACGGTGGCCCAGGGAGGCGAC
CAACCTCGAAGAAATACGGCGGGGCCTGGCGAGCGGCGTGGCAGGTATGC
CACTTGCACTCGTGTCGTCGTTCCCATCCTCCGAGTCGGTCACGCAGGAG
TGGATTTCCGAGTTGGGCGCCACTGCAATGTCAGTTGACCTTTGCTCTTT
GATTTTTGTGGCATACCCTGACACCCGTGCTGAGCAAGGAGCGAGAGGAG
CTGTGGCGCGTTCAACGTCCGTGATAAGTCGGAACAAAGCCCCGATCTCT
GCCTCCTTCAACGGACCCACTTTGCGGAAAAAGAGATTTCCTTCTTGACG
AGAAACGCGCTCAATCACTGTCGCCAGAGTAAATGACCGATAGGTCCTAG
GCGGCGCCCACAAGACCTTGTGCGAGGTAGCCTCCATATCTTCCCAGAGA
AGAGGCGACTGCGCCTGCCGCCCACTCCGGTATTGATCCGTAATCGGCCA
GTCTATCACATCGAACGACTCCAAACACCCGGATGGATTGGGAATACTTG
TATCTGAGGCCGTAGTGGTGGGTACGTCCGCCTCTCTCGGACTATGCCTG
ACGCCTTCCGCTCCACGCCAGTATTCCTTTCCATCATCGTGCCCGTTTGT
TCCACACTTGTTTGCTTTTGTAGGAGTTGCCTGGCACCGCAACTGGAGCA
AGAGAGCCGTCCCTAGGACCCATTCATCCGGACAGCAAGCGCTGGATATT
TTGTTGCCGAGTTTGAAGAGCTGCTTGAGGTCCGGGTACGCAACAATCAA
GCGGGCGTGGCCCCGGGTCAATCCACACCATTGCACATGACTCACAGCGC
TTTGCCGCAGTTTCTCATTCCGTTTGCCCCACCCAGACGCTTCTGTATGT
CAAAATGTATGGCTTGTGAGCGATGAAATCGAGGAGAAAAGACTCGGACT
CTGTAACCATGAAAATCGCGAAATCATTACCTTCCGGCTCCATACCTTTC
AAGTCCATGTCTTCTCCGGGCGTGAAGGCTATTACGCTCCTAAAAGGTAC
TACATTCTTGAACACTCCCTCCGTTATCACAGATCGAGTTGTAAAGAGGG
CAGACGGTGGCTGAATGGGTATGTCATACCCGGATACGATGTATATCATG
CCCACCGATGTATCTCCTTCAAGCACCGCCTGAAGAGATTTAATAGTTGC
ATGCACGATACTTGACGAGCACCATTTTGTGCGAAGCCGAAGTTTTAAGT
CATACTTAGTTGTAAAGAAGCTGGGATGGCTGATTTTTGTGTTGCGGAAG
ACGAAGAAGCGAATACGAGACGCAAATACCTGTGTGTAACGGCCACAGAA
AAGGTCAAAATGTCGATTATGCAGAGTCATCGGAACTGAGAGCTAGTTCT
TCCGTAGCACTTCTCAATTGTGTATACTAATGAGTTGAAAAGAGGATGGT
AGTGTTCACGTCACGCTGTATGGGACTACCCGAACTGCGGGTCCCATGTC
GCCCTGCCTCATCGAGCGAAACACCATTGTATTCGTAAAAGGTAAACCCG
TGTCTTAAACACATGACTTACTTTATCACTTGCTCGCCATTTTTCCCATA
ATAGGGGATTCGTCACTCCATCGTGAGCTAAAAAAAGAATCCCCACGCTG
TGCTGGTCCTTATCAGGAACACTATCTATACTAGCATTCGGCTTTTCAAC
ATGTGTCCCACTTCTACCGATATCAAAATTGGCGTGTGATTTTCCGTCGA
CGCAATTTTCACTTCTTGAAGCATCTGGCCTAACAGGGGATGTTGATGCC
TTTCGTTGGCCTTCCTTGACGTGGGAAGAGACCGATTTAAGGACGTGGCT
CGGGCCGCCTTCAGCGCAATTTTTAACATTTTCGCCGACATCAGCATCAT
AC

protein sequence of rna1515

>rna1515-protein ID=rna1515-protein|Name=rna1515|organism=Nannochloropsis gaditana|type=polypeptide|length=349bp
MCFPIDLGKAHVLIGERIQSSYRTIASLFCDMRCSLLRSSCCCLLLSAVV
LCRGWISANAEVAIVASPEAAGITQVARMVMEVRGGLKPARGSKGKNNGK
ISNGNNAGTKLGPKAPPPVHVDDDDDDDEEQEEEWGSEEDEDCMEEEEEF
GELAEEREGKYYESGRSGGSRQRNEWHYADRRRRLAARRRASHGMADLFK
GAAKITSSSVGKVAGLFQPNKYVSLREVLGVWKVKQKITEPGGEVERCEA
TLEIRKDGTVVTFFEGKELVSEFLFKERQWPRSCIIEFEARAFQGPYDRE
PQPKFYKGYVRRSLMNAGSVRLEGKIYDVQGTFFWRQKRQVGKFRAVKR

mRNA from alignment at CM002457.1:825493..826766+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1515 ID=rna1515|Name=rna1515|organism=Nannochloropsis gaditana|type=mRNA|length=1274bp|location=Sequence derived from alignment at CM002457.1:825493..826766+ (Nannochloropsis gaditana)
ATGGTGAATTAAAGCCAACCTACATAATGGAAGGGGATaccgaaagggag
gggaggttaaaagTAAAGAAAGAGCAGCTCGACGTCCCCAACGTCCTCTT
TGCGGAGCGTTTCCATTACACGCCGCCCTTCTTACACACGTTAGTATCAT
AAATAATCAGTGTTTTCCCATAGACCTGGGTAAAGCTCACGTCTTAATTG
GAGAAAGAATACAGTCTTCGTATCGCACGATCGCCTCGCTTTTTTGTGAC
ATGAGGTGCAGCCTCCTCCGTTCGTCGTGTTGCTGTCTTCTTTTGTCTGC
CGTGGTGCTTTGCCGCGGATGGATATCAGCAAATGGTAAGTCCAGGCCTG
TATCTGATCTTCGTATGCCCTTTGCTGACAGCttttttcccgcccgtcaC
AGCAGAGGTGGCCATCGTGGCCTCCCCAGAAGCCGCCGGCATCACGCAGG
TTGCTCGTATGGTAATGGAGGTCAGGGGAGGATTGAAGCCTGCAAGAGGT
TCCAAGGGGAAAAACAATGGTAAGATATCAAACGGGAATAATGCGGGGAC
TAAACTCGGTCCAAAGGCACCGCCGCCTGTACAtgtggacgacgacgacg
acgacgacgaggagcaggaggaggagtggggctcggaagaagatgaagat
tgtatggaggaggaggaggagttcgGAGAGCtggcggaagaaagagaagg
gaaatACTACGAAAGTGGACGCAGTGGCGGCAGCAGGCAGCGGAATGAGT
GGCATTACGCGGACAGGAGACGGCGACTGGCTGCCCGACGACGAGCGTCC
CACGGGATGGCGGACTTGTTCAAAGGAGCGGCGAAAATCACCAGCAGTTC
GGTAGGAAAGGTGGCTGGTCTCTTTCAGCCGAATAAATACGTGAGTCTGC
GGGAAGTGCTGGGCGTCTGGAAAGTAAAGCAAAAGATTACTgagccgggg
ggggaggtagaacGTTGCGAGGCGACCTTGGAGATCCGGAAGGACGGAAC
GGTCGTCACATTTttcgagggaaaggaatTGGTCTCTGAGTTTCTATTCA
AGGAGCGGCAGTGGCCGCGCTCCTGCATCATCGAGTTCGAAGCCCGGGCG
TTCCAGGGTCCGTACGACAGGGAGCCACAGCCCAAGTTCTACAAGGGATA
CGTGCGCCGGAGCCTGATGAACGCCGGCTCTGTCCGGCTTGAGGGTAAAA
TCTACGACGTGCAGGGGACTTTCTTTTGGCGCCAGAAGCGCCAAGTGGGG
AAGTTCCGGGCGGTGAAGAGATGA

Coding sequence (CDS) from alignment at CM002457.1:825493..826766+

>rna1515 ID=rna1515|Name=rna1515|organism=Nannochloropsis gaditana|type=CDS|length=3150bp|location=Sequence derived from alignment at CM002457.1:825493..826766+ (Nannochloropsis gaditana)
ATGTGTTTTCCCATAGACCTGGGTAAAGCTCACGTCTTAATTGGAGAAAG
AATACAGTCTTCGTATCGCACGATCGCCTCGCTTTTTTGTGACATGAGGT
GCAGCCTCCTCCGTTCGTCGTGTTGCTGTCTTCTTTTGTCTGCCGTGGTG
CTTTGCCGCGGATGGATATCAGCAAATGCAGAGGTGGCCATCGTGGCCTC
CCCAGAAGCCGCCGGCATCACGCAGGTTGCTCGTATGGTAATGGAGGTCA
GGGGAGGATTGAAGCCTGCAAGAGGTTCCAAGGGGAAAAACAATGGTAAG
ATATCAAACGGGAATAATGCGGGGACTAAACTCGGTCCAAAGGCACCGCC
GCCTGTACAtgtggacgacgacgacgacgacgacgaggagcaggaggagg
agtggggctcggaagaagatgaagattgtatggaggaggaggaggagttc
gGAGAGCtggcggaagaaagagaagggaaatACTACGAAAGTGGACGCAG
TGGCGGCAGCAGGCAGCGGAATGAGTGGCATTACGCGGACAGGAGACGGC
GACTGGCTGCCCGACGACGAGCGTCCCACGGGATGGCGGACTTGTTCAAA
GGAGCGGCGAAAATCACCAGCAGTTCGGTAGGAAAGGTGGCTGGTCTCTT
TCAGCCGAATAAATACGTGAGTCTGCGGGAAGTGCTGGGCGTCTGGAAAG
TAAAGCAAAAGATTACTgagccggggggggaggtagaacGTTGCGAGGCG
ACCTTGGAGATCCGGAAGGACGGAACGGTCGTCACATTTttcgagggaaa
ggaatTGGTCTCTGAGTTTCTATTCAAGGAGCGGCAGTGGCCGCGCTCCT
GCATCATCGAGTTCGAAGCCCGGGCGTTCCAGGGTCCGTACGACAGGGAG
CCACAGCCCAAGTTCTACAAGGGATACGTGCGCCGGAGCCTGATGAACGC
CGGCTCTGTCCGGCTTGAGGGTAAAATCTACGACGTGCAGGGGACTTTCT
TTTGGCGCCAGAAGCGCCAAGTGGGGAAGTTCCGGGCGGTGAAGAGATGA
ATGTGTTTTCCCATAGACCTGGGTAAAGCTCACGTCTTAATTGGAGAAAG
AATACAGTCTTCGTATCGCACGATCGCCTCGCTTTTTTGTGACATGAGGT
GCAGCCTCCTCCGTTCGTCGTGTTGCTGTCTTCTTTTGTCTGCCGTGGTG
CTTTGCCGCGGATGGATATCAGCAAATGCAGAGGTGGCCATCGTGGCCTC
CCCAGAAGCCGCCGGCATCACGCAGGTTGCTCGTATGGTAATGGAGGTCA
GGGGAGGATTGAAGCCTGCAAGAGGTTCCAAGGGGAAAAACAATGGTAAG
ATATCAAACGGGAATAATGCGGGGACTAAACTCGGTCCAAAGGCACCGCC
GCCTGTACAtgtggacgacgacgacgacgacgacgaggagcaggaggagg
agtggggctcggaagaagatgaagattgtatggaggaggaggaggagttc
gGAGAGCtggcggaagaaagagaagggaaatACTACGAAAGTGGACGCAG
TGGCGGCAGCAGGCAGCGGAATGAGTGGCATTACGCGGACAGGAGACGGC
GACTGGCTGCCCGACGACGAGCGTCCCACGGGATGGCGGACTTGTTCAAA
GGAGCGGCGAAAATCACCAGCAGTTCGGTAGGAAAGGTGGCTGGTCTCTT
TCAGCCGAATAAATACGTGAGTCTGCGGGAAGTGCTGGGCGTCTGGAAAG
TAAAGCAAAAGATTACTgagccggggggggaggtagaacGTTGCGAGGCG
ACCTTGGAGATCCGGAAGGACGGAACGGTCGTCACATTTttcgagggaaa
ggaatTGGTCTCTGAGTTTCTATTCAAGGAGCGGCAGTGGCCGCGCTCCT
GCATCATCGAGTTCGAAGCCCGGGCGTTCCAGGGTCCGTACGACAGGGAG
CCACAGCCCAAGTTCTACAAGGGATACGTGCGCCGGAGCCTGATGAACGC
CGGCTCTGTCCGGCTTGAGGGTAAAATCTACGACGTGCAGGGGACTTTCT
TTTGGCGCCAGAAGCGCCAAGTGGGGAAGTTCCGGGCGGTGAAGAGATGA
ATGTGTTTTCCCATAGACCTGGGTAAAGCTCACGTCTTAATTGGAGAAAG
AATACAGTCTTCGTATCGCACGATCGCCTCGCTTTTTTGTGACATGAGGT
GCAGCCTCCTCCGTTCGTCGTGTTGCTGTCTTCTTTTGTCTGCCGTGGTG
CTTTGCCGCGGATGGATATCAGCAAATGCAGAGGTGGCCATCGTGGCCTC
CCCAGAAGCCGCCGGCATCACGCAGGTTGCTCGTATGGTAATGGAGGTCA
GGGGAGGATTGAAGCCTGCAAGAGGTTCCAAGGGGAAAAACAATGGTAAG
ATATCAAACGGGAATAATGCGGGGACTAAACTCGGTCCAAAGGCACCGCC
GCCTGTACAtgtggacgacgacgacgacgacgacgaggagcaggaggagg
agtggggctcggaagaagatgaagattgtatggaggaggaggaggagttc
gGAGAGCtggcggaagaaagagaagggaaatACTACGAAAGTGGACGCAG
TGGCGGCAGCAGGCAGCGGAATGAGTGGCATTACGCGGACAGGAGACGGC
GACTGGCTGCCCGACGACGAGCGTCCCACGGGATGGCGGACTTGTTCAAA
GGAGCGGCGAAAATCACCAGCAGTTCGGTAGGAAAGGTGGCTGGTCTCTT
TCAGCCGAATAAATACGTGAGTCTGCGGGAAGTGCTGGGCGTCTGGAAAG
TAAAGCAAAAGATTACTgagccggggggggaggtagaacGTTGCGAGGCG
ACCTTGGAGATCCGGAAGGACGGAACGGTCGTCACATTTttcgagggaaa
ggaatTGGTCTCTGAGTTTCTATTCAAGGAGCGGCAGTGGCCGCGCTCCT
GCATCATCGAGTTCGAAGCCCGGGCGTTCCAGGGTCCGTACGACAGGGAG
CCACAGCCCAAGTTCTACAAGGGATACGTGCGCCGGAGCCTGATGAACGC
CGGCTCTGTCCGGCTTGAGGGTAAAATCTACGACGTGCAGGGGACTTTCT
TTTGGCGCCAGAAGCGCCAAGTGGGGAAGTTCCGGGCGGTGAAGAGATGA

Synonyms

Publications