EWM29157.1, cds1512 (CDS) Nannochloropsis gaditana

Overview
NameEWM29157.1
Unique Namecds1512
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:825493..825495 +
Alignment locationCM002457.1:825653..825827 +
Alignment locationCM002457.1:825895..826766 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29157.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100007g60.6484.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:825493..825495 +
CM002457.1supercontigCM002457.1:825653..825827 +
CM002457.1supercontigCM002457.1:825895..826766 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29157.1 vs. NCBI_GenBank
Match: gi|585111677|gb|EWM29157.1| (hypothetical protein Naga_100007g60 [Nannochloropsis gaditana])

HSP 1 Score: 716.842 bits (1849), Expect = 0.000e+0
Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 0
Query:    1 MCFPIDLGKAHVLIGERIQSSYRTIASLFCDMRCSLLRSSCCCLLLSAVVLCRGWISANAEVAIVASPEAAGITQVARMVMEVRGGLKPARGSKGKNNGKISNGNNAGTKLGPKAPPPVHVDDDDDDDEEQEEEWGSEEDEDCMEEEEEFGELAEEREGKYYESGRSGGSRQRNEWHYADRRRRLAARRRASHGMADLFKGAAKITSSSVGKVAGLFQPNKYVSLREVLGVWKVKQKITEPGGEVERCEATLEIRKDGTVVTFFEGKELVSEFLFKERQWPRSCIIEFEARAFQGPYDREPQPKFYKGYVRRSLMNAGSVRLEGKIYDVQGTFFWRQKRQVGKFRAVKR 349
            MCFPIDLGKAHVLIGERIQSSYRTIASLFCDMRCSLLRSSCCCLLLSAVVLCRGWISANAEVAIVASPEAAGITQVARMVMEVRGGLKPARGSKGKNNGKISNGNNAGTKLGPKAPPPVHVDDDDDDDEEQEEEWGSEEDEDCMEEEEEFGELAEEREGKYYESGRSGGSRQRNEWHYADRRRRLAARRRASHGMADLFKGAAKITSSSVGKVAGLFQPNKYVSLREVLGVWKVKQKITEPGGEVERCEATLEIRKDGTVVTFFEGKELVSEFLFKERQWPRSCIIEFEARAFQGPYDREPQPKFYKGYVRRSLMNAGSVRLEGKIYDVQGTFFWRQKRQVGKFRAVKR
Sbjct:    1 MCFPIDLGKAHVLIGERIQSSYRTIASLFCDMRCSLLRSSCCCLLLSAVVLCRGWISANAEVAIVASPEAAGITQVARMVMEVRGGLKPARGSKGKNNGKISNGNNAGTKLGPKAPPPVHVDDDDDDDEEQEEEWGSEEDEDCMEEEEEFGELAEEREGKYYESGRSGGSRQRNEWHYADRRRRLAARRRASHGMADLFKGAAKITSSSVGKVAGLFQPNKYVSLREVLGVWKVKQKITEPGGEVERCEATLEIRKDGTVVTFFEGKELVSEFLFKERQWPRSCIIEFEARAFQGPYDREPQPKFYKGYVRRSLMNAGSVRLEGKIYDVQGTFFWRQKRQVGKFRAVKR 349          
BLAST of EWM29157.1 vs. NCBI_GenBank
Match: gi|298710352|emb|CBJ31970.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 149.828 bits (377), Expect = 2.348e-37
Identity = 71/152 (46.71%), Postives = 97/152 (63.82%), Query Frame = 0
Query:  198 LFKGAAKITSSSVGKVAGLFQPNKYVSLREVLGVWKVKQKITEPGGEVERCEATLEIRKDGTVVTFFEGKELVSEFLFKERQWPRSCIIEFEARAFQGPYDREPQPKFYKGYVRRSLMNAGSVRLEGKIYDVQGTFFWRQKRQVGKFRAVKR 349
            + K   K T  S+  +    QP K V L E+L  WK++Q + +P G V +C AT+E R+DGTV T F+G+E VS+F F+   WPR+C IEFEA+AFQGP+D EP  K YKG   R L++   + LEG IYDV G   W+++ + GKF A +R
Sbjct:  250 VMKSVGKATGKSMKAMVHALQP-KSVGLGEILDTWKIEQVVGKPPGRVTKCAATVEFRRDGTVATSFDGRETVSDFTFRAHAWPRACTIEFEAKAFQGPWDEEPVWKVYKGSFSRKLLDPKIIMLEGTIYDVTGKMMWKRRVKSGKFTARRR 400          
BLAST of EWM29157.1 vs. NCBI_GenBank
Match: gi|219114913|ref|XP_002178252.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409987|gb|EEC49917.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 79.337 bits (194), Expect = 3.992e-13
Identity = 61/196 (31.12%), Postives = 92/196 (46.94%), Query Frame = 0
Query:  168 GGSRQRNEWH--YADRRRRLAARRRASHGMADLFKGAAKITSSSV-------GKVAGLFQPNKYVSLREVLGVWKVKQK-ITEPGGEVERCEATLEIRKDGTVVTFFEGKELVSEFLFKERQWPRSCIIEFEARAFQGPYDREPQPKFYKGYVRRSLMNAGSVRLEGKIYDVQGTFFWR----QKRQVGKFRAVKR 349
            GG +  +E H   +D +      +  S  ++   K +  +T+ +V       GK A      K V L E+LG+W++ Q+ I  P          LE+     VVT  +GK +     F   ++P+S  +EF AR F    D +P   FYKGYV R L +   ++++GKIY V+ T  WR    +   VG F A KR
Sbjct:   51 GGYQDYDEEHDDNSDEQDSRGISKSTSSTLSYFAKKSLSLTTKAVTASAQQSGKAAYWAIRPKQVDLNELLGLWRLDQQVILYPNDGPLESSTNLELTPKAVVVTL-DGKPVPFSLTFTPARFPKSAKVEFTARTFIPIEDEQPPLFFYKGYVHRKLADLSVIKIKGKIYRVEST-GWRGQGIKHVIVGTFLARKR 244          
The following BLAST results are available for this feature:
BLAST of EWM29157.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585111677|gb|EWM29157.1|0.000e+0100.00hypothetical protein Naga_100007g60 [Nannochlorops... [more]
gi|298710352|emb|CBJ31970.1|2.348e-3746.71conserved unknown protein [Ectocarpus siliculosus][more]
gi|219114913|ref|XP_002178252.1|3.992e-1331.12predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1515rna1515Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications