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Properties
| Property Name | Value |
|---|
| Product | zinc finger (c3hc4-type ring finger) family protein |
| Orig transcript id | gnl|cribi|Naga_100007g69.6478.mrna |
| Orig protein id | gnl|cribi|Naga_100007g69.6478 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:811354..813033 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1509 ID=rna1509|Name=rna1509|organism=Nannochloropsis gaditana|type=mRNA|length=6377bp
CCTGCTCCCATTCCCCTTCGCCACGTCTTGGTGCCACAGATACGACGCCA
TCGCGCAGCATACATGTACTCATCTCCACTTGGGACATTTCTACCTTTCT
TAATCTTTACTTCAGGTAACTAGGAATTCATCCGCGAATCGACTTCTCAA
CGGTCGCCGAGTCTTCCATTTTCTTCTTGCACATCCTCTAGAGACTCCGC
GAGTAGTTTATCAGAAATTGCCTTTTGGTTCTGTTTTTCAAATAATTTTC
ATAAGCACGTGCGAGGTGCATAGAGACCGGGTCGTAGCTGGTCCGCATTA
ATTAAACGTGACGCATGGGCTTTCCGTTATCGCTGGAAGTTGCGCAAGGG
TGGTGTGCGGGTTCTTGCATTTCGGCTCTTGCGTGCGGAGGGTGACAAGC
CTGTCTAACTAGGGGCATGGACTTAGTACTGATCACTCACCACTTGTAAC
GCTACTTATTTAAGAGAGGGGGCCGCAGAGAGTGTTCTGAAAGGTGCATT
CGTCCGTTATGACTTGATGGCGCAGAACGCACAGAGCTGCACTCGGATGC
CTTGCTCCGCATCATGCTCTTTCTAGTTTGTGCAAAGGCAAAGGCCCTGG
ACTTTCTAAACATATGCATTCATTATTTTATGGCGTCCGCTTTATTCTCA
CGATTGACGCATCCCTTTGCACAGGTCCTCAAGAGCTGGTCGTAACTGTT
GTCGCGTTGCGCCAGTCAGATATTGGGAGTGACTTGCCAAGAGCCGTTTT
AGGCAAAAGATCGTGCATCTGAAATAAGTATGGCACAACATCCCATCGTG
CTGCTGGAGCTCTTGGACTTGCCAGCCCTCGGGGTCAACCCGGAGGCCGT
CAAGTTCGGGAGCACCACAATGGAGTCAGACAAATTCATCGTGACTTGCG
AGACGGTGGGAGAGCAGCAGAACGTTGTCATGGTCGACCTCGAGGCGAAC
AACGCAGTCACGCGCCGGCCCATCTCGGCTGAAGCGGCCATCATGAACCC
CGTCTCCAAGGTCCTCGCCCTTAGAGCCGGTACGCAGCTGCAGATATTCA
ACCTAGAGCTCCGCGCCAAAATGAAGTCCTACCAGACGCCAGACCCCATC
ATTTTCTGGCGGTGGGTAACGCCCAACACGATCGCCTTGGTAACGCAAAA
TGGTGTTTACCATTGGTCCATCGAGGGAGATGCACCGCCTGTGAAGCTCG
AGAAGTTCGACGTTTTTCCCGAGGGTACGCAGGTCATCTCCTACAAACTG
AGCGGCGACGGGAAGTGGGCCTTGCTGGTGGGAATCTCTGCCGGAGCCAA
TGGCGTCATCGACGGGCGCATTCACCTCTACTCCATCGAGAAGTCTCGCT
ACCAGCAACTGCACGGACACGCCGGTTGCTTCGCCACCATTAAAGTGCCC
GGTCGGACGGATCCCGCTCAGGTGCTTATTTTTGAGGAGAAAAAACCTGA
GCAGGCAGCAAAGCTCTTTGTCATGGAGGTTGGGCGGGACAAGGACTCAC
CAGGTGGTGTCTTTCGGCTGCAGCCCCAACAGATCCAATTTCCGGCAGAG
GCCCCAAACGACTTCCCTGTCTCTATGACCTCCGCGCCTGGTCAGGATAT
TATTTTTATGATCACCCGCATGGGCTACTTATTTCTCTTTGATATCCACA
CGGGCAAAACGATATACCGTACACCCAATCGTATCGCGAAAGATACAGTT
TTCGCTACCACCACTCAAGACGTGTCGGCGGGCGTGCTCGGCATAACTGC
GCGGTCGGGGAAAGTCCTCCAGATGAATATCAACGAGCAAACTATTGTCC
CGTATATCGTGCAGGTCCTGCGCGATAATCAGCTTGCCATCGATATTGCC
CGTCGTCTGAATGTCCCAGGGGCCCGTGACTTGTATGTGCAAGAATTCAA
CAAGCTCTTGGCCCAAGGGGACGCCGCGGGGGCGGCGCGTCTGGCAGCCG
AGTCCCCGCAAGGAATTTTGAGGACTCAGGACACAATTGACCGCTTCAAG
CAGATTCCAGCCATGGCCGGGGCGCCTCAGCCAATTTTTCAATACTTCTC
GATCCTGTTAGAGGTAGGGCCCTTAAATAAGTCGGAGTCTCTCCAGCTCG
TGGAGCTGGCCCAGGGTCGCACTCAGCTCATTGAGAAGTGGCTGACTGAG
GATAAATTGGAGGCGTCGGAGGAGCTTGGTGACCTTCTTTACCCTGTCGA
CTCCAACTTGGCGCTTTCAGTTTATATTCGGGCCGCTGTTCCTGAGAAGG
CAATCAATTGCTTTTTGCAGCGTGGAGAGTTTGACAAAATTGTTGCTTAC
GCACAGAAGGTTGGATATCGAGCTGACTACACGCATCTTCTGCAGAACCT
GGTCCGCGCGCACCCCCAAGGCGCTGTAGACTTCGCTAAACGCCTAGTCG
CAAACGAACAAGGTCCTCTTATCGACACGCAAGCTGTTGTGGATATCTTT
ATGTCGCTGAACCGCGTGCAGGAGACGACGGCTTTCCTCCTGGAGGCGCT
GAAAGGAAATAAGCGGGAGGAGGGCCATCTGCAAACGAAACTTCTCGAGA
TTATCCTCTTGAGCGGCAATCCGCAGTTTGCGGAGGCCATTTTGCAGAAC
GAAATGTTCTCGCATTATGATCGCGCTGTTGTCGCAAAGTTGTGCGAACA
GGCTGGACTCTTTCAACGTGCGTTGGAGCACTACACCAACCTCGTCGACA
TCAAGCGCATTATGGCGAAAGGCAGCTCGGCTCTCAGTCCCGACTTTCTG
CTTGGCTTTTTTGGCAAGCTGAACAAAGACACTACGCTTGAATGCCTGAA
TGACCTGCTGGGGGCCAATCTCAGACAAAATCTTCAATTGGTGGTGCAAG
TGGCGACGAAGTACTCGGAGCAGCTGGGTGCGGGCGCCTTGATCAAGCTA
TTTGAGAAATTTAAATCTTTTGAGGGTCTCTACTATTACCTCTCTGCGAT
CGTCAATACGTCACAAGAGCCAGTCGTGCACTTTAAGTACATCGAAGCGG
CGGCGAAGCTTGGTCAGCTCAAAGAAGTAGAGCGCGTCTGTCGTGATTCC
ACCGTTTATAACCCTCAAGAGGTCAAGACCTTCCTGATGGACGCTAAACT
TCCTGACCCTAAGCCTCTCATTTACGTCTGCGACCGCCATGGGTTTATCG
AGGAAATGACGGGTTATCTTTATACGAACAATCTTAAAAAATACATTGAG
GTGTACGTGCAGAAGGTGTCGCCCACCAAGACGCCGCAGGTGGTCGGCAA
GCTCCTGGACCTGGACTGCAACGAGGACTTTGTTCGCATGCTCCTTCAGA
GCATTGGCATCGCGTGTCCTGTAGAGGAACTCGTCGAACAGGTTGAGCGA
CGGAATCGACTTCGAATTGCGCAGCCTTGGTTGGAGTCATTGGTAGCTAC
AGGTAACACGGAGACCGCCACGCACAATGCCATCGGAAAGATCTACATCA
CACTTAATCGGGACCCAGTGAACTTCCTGAAAAATAACCAGTTTTACGAT
CCGTTGGTGATTGGCAAGTACTGCGAGAAACTTGACCCATCTCTCGCTTT
CTTAGCCTATCAGCGCGGCGGCGGAGCGTGTGATGATGACCTAATTCGTG
TGACCAACGAGAATGGCCTCTTTAAAGACCAGGCCAGGTACTTGATTGAG
AAACGTGACGGCGACCTGTGGGCGAAGGTTCTTTCAGAGGAAAATCAACA
TCGACGAGCCCTTATCGACCAGGTGGTGCAGACAGCCTTGCCGGAGACTG
AGACCGCTGAACAAGTTTCGGAGACTGTGAAGGCCTTTATGGCCGCAGAT
TTGAGTGTAGAATTGATCGAGCTTCTCGAGCGCATTGTCCTTCATGGCTC
CAAGTTCTCGAACACTCGCTCTTTGCAAAACCTATTGATTCTCACCGCCA
TTAAGTCAGAGAAAGATCGCGTACAGGACTACATCAATCGCTTGGACAAT
TTTGACGGACCGGAGATCGCTAAAATTGCAGCATCTGAGCAGTACGAGCT
GTACGAGGAGGCTTTCGCCATCTATGTGAAATTCGCCAAAGCAGCGAAGA
ATGCAGAGGAGAGGGGTAGTCTGAATAGAGCTGCCTGCGAAGTACTGGTA
GACAATTTACGAGCATTGGATCGTGCTAAGGCGTTTGCTGAGCGCATTAA
CGAACCAGAGGTCTGGTCAAAGCTGGCCAAGGCTCAGCTAGACGATGACA
ATGTGCACGAGGCGGTGAATTCTTACATCAAGGCCAACGATCCCGCGCAT
TATTCAGATGTTATCGCGGTGGCTCAACGCTACGGAGCATTTGAAGACTT
GGTCCGGTACTTGAAGATGGTCAGGAAGCAAATTAAGGAACCTCACGTGG
ACACAGAGTACATCTATTCACTGGCGAAGACGGGGAAACTCCCGGAGCTC
GAAGAATTCATTGCGGCCCCAAACGTCGCGAACATTCAGAGCATCGGAGA
GCGCCTTTTCGACGAAGGGAATTATGAAGCGGCCAAGCTACTGTTCAACA
ATATCAACAATAATTCCAAGCTTGCGTTGTGCTTTATCAATTTGAATCAG
TACAGAGAGGCTGTTGATGCGGCACAGAAAGCCAATTCGATTTCGACTTG
GAAGGAGGTGAACATTGCTTGCGTCAAGGTTGGCGAGTTCCGTCTGGCGG
CCATCTGCGGCTTGCATATCATAGTCCATCCTGATCACCTGGAGGAACTT
ATCCAGCACTATGAGCGGGCGGGCCACCCCAAAGAGCTGATGCAATTGCT
GGAACAAGGCTTGGGGTTGGAGGGTGCGCACTCGGGGATCTTCACGGAGC
TTGGCATCCTTTACTCCAAGTACCTCCCCGAGAAGTTGATGGAGCACCTG
AAGATCTTCCACAACCGGATGAACGTGCCCAAAATGCTTCGGGCGTGCGA
AAAGGCCTTGCTTTGGGACGAGACCGTTTATCTTTACAAAGAGGACGGCC
AACCCGATAATGCCGTCAAGACAATGATCGAACACCCTATTGCATTCTAC
CATGAGCTCTTTTTGGACTGTATTCAGAAGGCCCGCAATCAGGAAGTGTA
TTACCGGGCAATTGCTTTCTATCTCGAGCAACAGCCCATGCTTTTAGAAC
GCCTGCTTACCCTTCTCACGCCCAACTTGGACCATGCAAGGGTCGTCCAC
CAGCTACGACGCGCCGAGAACCTCCCATTGGTTTTGCCTTACCTTAAGTC
AGTTCAAAAAGAGAACATCTCGGTCGTGAACGAGGCTTTGAATGAGCTTT
ATATTGACGATGAGGATTATACAGCGTTGCGAGAGTCCATTGACAGTTAT
GACAACTTTGACCAGATCGCACTCGCTGTGCGCATTGAAAATCACGAGTT
GCTGGAATTTCGCCGGTTAGCAGCAGCTCTCTACAGGAAGAATAAACGCT
GGGCCCAGTCTGTTTCTCTTTCCAAGGCGGACAAGATGTACAAGGACGCA
ATCGATACTGCTGCTCAATCTGGAGACGGAGATCTGGTGGAGGAGCTGCT
CCGCTTCTTTGTTTCAGTGCAGGATCGAGAATGTTTTGCTGCCGTCCTCT
TCACATGCTACGAGCTTATCCGGCCCGATGTGGCTTTGGAGCTTGCTTGG
CGTAATAACTACTACGACTTTTTCATGCCCTATATTATTCAGTATCTGCG
ACATGCGCATGAGAGGATCAAAGCACTGGAGGCCCGCACGGCTTCTTTGG
ACGTGGCGCATAAGGAGGCCGAAAACTCGGCAGCCGCTGCTGTGGGGGAT
GCCGCGGTCTCTCTCGGGTTGTACGGTAATCAACTTATGCTTACAGACGG
TGCGCCAGCACTGCTAGCCAATGAGGCATTTAACCCCATGACGGGCTATG
AGCATCAAGGTATGGGCGGTGTGGGAGGAGGAGGATACGCTGGCACCGGC
TTTGGCATGGCCCCGCCTCAAGGATACGGCCAACAGCAATCGCAGCAACA
AGTGCCGTATCCTCCCCAAAGCGGGTTTCAGGGCGGATTCGGGCCTCAAG
GAGGTTACGGGGGATCATGGTGAGTCACCTTCACCGAGTGGGGGGGGGGA
TGTACTAAGTATTTCTCGAAATGGGTGGACAATACAAGGCGAGAAAGAGA
AAGGAAATGAAGAGATGAAGTTAACTCCAAAGAGTATTTTGTCACGTGCC
ATTGTGACTGTGAAGTGACGTCTGTCGGGTGATGTTATTGATCCCCCTCG
TGTGCAAGGAAAAGGCCTTAAAGGAAGACAGCAGGCGAAAGGGCCGCATA
GGGGAAAGGAAAAGGGAGTCAAGGAGATACGGTGCAATCAGGCAGCAACA
TTATTTTTCTTGGAAAAAAACAAAATCAAACACGCCTCCAAAGATATCGG
CAAGCGTGTCCTCATTTTTAGCAAATC back to topprotein sequence of rna1509 >rna1509-protein ID=rna1509-protein|Name=rna1509|organism=Nannochloropsis gaditana|type=polypeptide|length=387bp
MVRTRSRSPEQPVPAAVFPVAAAATPAEDRQCYDANRSAWNSSHSNNSSC
DCNRSTNHSSHDSSHAPPSRPLTPTFFDAVASPARGEMLTLGDLECGVCL
GLLCEAVTTPCGHSLCRLCLVRALQRQTKCPVCRAVCMINAEDHAETRLL
TRLAKRAFPALYEQRLEETRQEREALKLLLPIFFYNLPIFPGEALRLHLF
EPRYRLMMQRIVNGSRRFAYVPNYSNYRAKAGDIALIAELKEVRFMRDGR
SELEARIAGRFTIAEDPYVEDGTGGLSYCRLKELRDESPKSAEASQALRQ
ASEKAREMAHAIFLERRDIKAVVVDRYGEMPGPQTPEALSLWIAAVLPTE
NRQIKHDLLVSTDTSHRLEVCISKLQALRGAGMGKSS back to topmRNA from alignment at CM002457.1:811354..813033- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna1509 ID=rna1509|Name=rna1509|organism=Nannochloropsis gaditana|type=mRNA|length=1680bp|location=Sequence derived from alignment at CM002457.1:811354..813033- (Nannochloropsis gaditana)
ACGAGCTCTCTCACTCCAACATGTCGTGCCATCTTTCTCGCATCTCGCCC
TGCTGCCTCTACTTCCACCAGGTCATCATATCAAAGCACACGCCGTTTAA
AAGATCCCCCTTCTACACCAACTCATCAGCCTTAGACCCGGACTCCTAGT
ATGGTTCGCACGCGCAGCCGATCCCCTGAACAACCTGTCCCGGCCGCGGT
CTTCCCAGTCGCAGCGGCCGCCACGCCAGCGGAGGACAGGCAATGCTACG
ATGCGAACAGGAGTGCCTGGAATAGCAGCCACAGCAACAATAGCAGCTGC
GATTGCAATCGTAGTACAAATCATAGCAGCCATGACAGCAGCCATGCACC
ACCCTCACGGCCCTTGACTCCAACATTTTTCGACGCGGTAGCTTCTCCAG
CACGAGGGGAGATGCTTACCCTGGGGGATTTGGAATGTGGTGTGTGTCTT
GGCCTGCTATGTGAAGCGGTAACAACCCCTTGTGGGCATAGTCTCTGTCG
ACTTTGCTTGGTCCGGGCGCTGCAACGTCAGACGAAGTGTCCTGTCTGCC
GTGCCGTTTGTATGATAAACGCTGAGGACCATGCCGAGACTCGACTTCTG
ACGCGACTGGCGAAGCGAGCGTTTCCCGCCCTGTACGAGCAGCGACTGGA
AGAAACCAGACAGGAACGAGAGGCATTGAAGCTCTTGCTGCCCATCTTTT
TCTATAACCTCCCCATCTTTCCCGGCGAGGCCCTGCGCCTGCACCTGTTC
GAGCCCCGGTACCGGCTCATGATGCAGCGCATCGTGAATGGCAGCCGGCG
ATTCGCCTATGTGCCCAATTACTCTAACTATCGCGCCAAAGCTGGTGATA
TTGCGCTGATAGCAGAATTGAAGGAGGTGAGATTCATGCGCGACGGACGA
AGCGAATTGGAGGCACGGATTGCGGGACGCTTCACGATCGCGGAGGATCC
TTACGTGGAGGATGGGACCGGGGGCTTGAGCTACTGTCGGCTCAAGGAAT
TGCGGGACGAGTCCCCAAAATCTGCGGAGGCCAGTCAGGCACTGCGGCAG
GCAAGCGAAAAAGCGCGAGAAATGGCTCACGCGATTTTTCTTGAGCGACG
TGACATCAAAGCCGTCGTCGTGGACCGGTATGGGGAGATGCCGGGCCCGC
AGACACCGGAGGCCCTCTCTCTTTGGATTGCGGCTGTGCTTCCAACCGAG
AATCGCCAAATCAAACACGACCTGCTTGTGAGCACAGACACCTCCCACCG
CCTTGAGGTGTGTATTTCCAAACTACAGGCTTTGCGGGGGGCTGGCATGG
GCAAATCATCTTGAGAATGGGATTTCGGAACGAAGAAGCATGCCACACCA
AGAAAATGGACCATCATAAAGACATACAGTCAAAGCATGGGTGCCCTCGC
TTCCACGGACGGCACCGTCAACATCACCCGTCATTTTCCTCGTCCTTCTC
ATCTTTAATGTGCAGAGTCATCCTGAATAGTAGACGTGAAGAGCGGTTAA
AGCGTCTTAAGAGTCCTGCGGACGAGCAGTGATACGAGATGCAAGTCAAC
AAGGGAAACCCAGAAAGCAATCGAGGACCACAAACGATTTGCTAAAAATG
AGGACACGCTTGCCGATATCTTTGGAGGCGTGTTTGATTTTGTTTTTTTC
CAAGAAAAATAATGTTGCTGCCTGATTGCA back to topCoding sequence (CDS) from alignment at CM002457.1:811354..813033- >rna1509 ID=rna1509|Name=rna1509|organism=Nannochloropsis gaditana|type=CDS|length=1164bp|location=Sequence derived from alignment at CM002457.1:811354..813033- (Nannochloropsis gaditana)
ATGGTTCGCACGCGCAGCCGATCCCCTGAACAACCTGTCCCGGCCGCGGT
CTTCCCAGTCGCAGCGGCCGCCACGCCAGCGGAGGACAGGCAATGCTACG
ATGCGAACAGGAGTGCCTGGAATAGCAGCCACAGCAACAATAGCAGCTGC
GATTGCAATCGTAGTACAAATCATAGCAGCCATGACAGCAGCCATGCACC
ACCCTCACGGCCCTTGACTCCAACATTTTTCGACGCGGTAGCTTCTCCAG
CACGAGGGGAGATGCTTACCCTGGGGGATTTGGAATGTGGTGTGTGTCTT
GGCCTGCTATGTGAAGCGGTAACAACCCCTTGTGGGCATAGTCTCTGTCG
ACTTTGCTTGGTCCGGGCGCTGCAACGTCAGACGAAGTGTCCTGTCTGCC
GTGCCGTTTGTATGATAAACGCTGAGGACCATGCCGAGACTCGACTTCTG
ACGCGACTGGCGAAGCGAGCGTTTCCCGCCCTGTACGAGCAGCGACTGGA
AGAAACCAGACAGGAACGAGAGGCATTGAAGCTCTTGCTGCCCATCTTTT
TCTATAACCTCCCCATCTTTCCCGGCGAGGCCCTGCGCCTGCACCTGTTC
GAGCCCCGGTACCGGCTCATGATGCAGCGCATCGTGAATGGCAGCCGGCG
ATTCGCCTATGTGCCCAATTACTCTAACTATCGCGCCAAAGCTGGTGATA
TTGCGCTGATAGCAGAATTGAAGGAGGTGAGATTCATGCGCGACGGACGA
AGCGAATTGGAGGCACGGATTGCGGGACGCTTCACGATCGCGGAGGATCC
TTACGTGGAGGATGGGACCGGGGGCTTGAGCTACTGTCGGCTCAAGGAAT
TGCGGGACGAGTCCCCAAAATCTGCGGAGGCCAGTCAGGCACTGCGGCAG
GCAAGCGAAAAAGCGCGAGAAATGGCTCACGCGATTTTTCTTGAGCGACG
TGACATCAAAGCCGTCGTCGTGGACCGGTATGGGGAGATGCCGGGCCCGC
AGACACCGGAGGCCCTCTCTCTTTGGATTGCGGCTGTGCTTCCAACCGAG
AATCGCCAAATCAAACACGACCTGCTTGTGAGCACAGACACCTCCCACCG
CCTTGAGGTGTGTATTTCCAAACTACAGGCTTTGCGGGGGGCTGGCATGG
GCAAATCATCTTGA back to top
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