EWM29151.1, cds1506 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29151.1 vs. NCBI_GenBank
Match: gi|585111671|gb|EWM29151.1| (zinc finger (c3hc4-type ring finger) family protein [Nannochloropsis gaditana]) HSP 1 Score: 796.579 bits (2056), Expect = 0.000e+0 Identity = 387/387 (100.00%), Postives = 387/387 (100.00%), Query Frame = 0 Query: 1 MVRTRSRSPEQPVPAAVFPVAAAATPAEDRQCYDANRSAWNSSHSNNSSCDCNRSTNHSSHDSSHAPPSRPLTPTFFDAVASPARGEMLTLGDLECGVCLGLLCEAVTTPCGHSLCRLCLVRALQRQTKCPVCRAVCMINAEDHAETRLLTRLAKRAFPALYEQRLEETRQEREALKLLLPIFFYNLPIFPGEALRLHLFEPRYRLMMQRIVNGSRRFAYVPNYSNYRAKAGDIALIAELKEVRFMRDGRSELEARIAGRFTIAEDPYVEDGTGGLSYCRLKELRDESPKSAEASQALRQASEKAREMAHAIFLERRDIKAVVVDRYGEMPGPQTPEALSLWIAAVLPTENRQIKHDLLVSTDTSHRLEVCISKLQALRGAGMGKSS 387 MVRTRSRSPEQPVPAAVFPVAAAATPAEDRQCYDANRSAWNSSHSNNSSCDCNRSTNHSSHDSSHAPPSRPLTPTFFDAVASPARGEMLTLGDLECGVCLGLLCEAVTTPCGHSLCRLCLVRALQRQTKCPVCRAVCMINAEDHAETRLLTRLAKRAFPALYEQRLEETRQEREALKLLLPIFFYNLPIFPGEALRLHLFEPRYRLMMQRIVNGSRRFAYVPNYSNYRAKAGDIALIAELKEVRFMRDGRSELEARIAGRFTIAEDPYVEDGTGGLSYCRLKELRDESPKSAEASQALRQASEKAREMAHAIFLERRDIKAVVVDRYGEMPGPQTPEALSLWIAAVLPTENRQIKHDLLVSTDTSHRLEVCISKLQALRGAGMGKSS Sbjct: 1 MVRTRSRSPEQPVPAAVFPVAAAATPAEDRQCYDANRSAWNSSHSNNSSCDCNRSTNHSSHDSSHAPPSRPLTPTFFDAVASPARGEMLTLGDLECGVCLGLLCEAVTTPCGHSLCRLCLVRALQRQTKCPVCRAVCMINAEDHAETRLLTRLAKRAFPALYEQRLEETRQEREALKLLLPIFFYNLPIFPGEALRLHLFEPRYRLMMQRIVNGSRRFAYVPNYSNYRAKAGDIALIAELKEVRFMRDGRSELEARIAGRFTIAEDPYVEDGTGGLSYCRLKELRDESPKSAEASQALRQASEKAREMAHAIFLERRDIKAVVVDRYGEMPGPQTPEALSLWIAAVLPTENRQIKHDLLVSTDTSHRLEVCISKLQALRGAGMGKSS 387
BLAST of EWM29151.1 vs. NCBI_GenBank
Match: gi|551673551|ref|XP_005839531.1| (hypothetical protein GUITHDRAFT_101718 [Guillardia theta CCMP2712] >gi|428183694|gb|EKX52551.1| hypothetical protein GUITHDRAFT_101718 [Guillardia theta CCMP2712]) HSP 1 Score: 175.252 bits (443), Expect = 9.802e-49 Identity = 99/263 (37.64%), Postives = 147/263 (55.89%), Query Frame = 0 Query: 144 HAETRLLTRLAKRAFPALYEQRLEETRQEREALKLLLPIFFYNLPIFPGEALRLHLFEPRYRLMMQRIVNGSRRFAYVPNYSNYRAKAGDIALIAELKEVRFMRDGRSELEARIAGRFTIAEDPYVEDGTGGLSYCRLKELRDESPKSAEASQALRQASEKAREMAHAIFLER---RDIKAV---------------------VVDRYGEM---------PGPQTPEALSLWIAAVLPTENRQIKHDLLVSTDTSHRLEVCIS 373 HAE + + + FP Y+ R++E + ER A + +LPIFFYN ++P L LHLFEPRY++M++RIV SR+FAY+P +Y+A GD+ +IAEL EV F+ DGR+ ++A+ RF I D +VEDGT GL +C+++ + DE P + A + Q +E +E A +E +D AV +++ +G M P P+ PE LS W+A++LP Q KH+LL S T RL +S Sbjct: 2 HAENITIVNILRNCFPDQYQARIDELQHERNAWENILPIFFYNDTLYPYSPLVLHLFEPRYKIMIKRIVQASRKFAYLPCMHSYQASVGDVGVIAELSEVEFLPDGRAHVQAKCRDRFRIL-DTWVEDGTQGLHWCKVEIIHDE-PVESHADVQVSQENENEQEDAGDANVEESQDQDGAAVQAQSTQSLEECARECSQMFEAMMENFGNMRSDIDVAHGPKPENPEKLSFWLASILPVPYHQ-KHNLLTSRSTMERLNELLS 261
BLAST of EWM29151.1 vs. NCBI_GenBank
Match: gi|873239760|emb|CEL94050.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 174.096 bits (440), Expect = 1.004e-46 Identity = 120/324 (37.04%), Postives = 174/324 (53.70%), Query Frame = 0 Query: 79 AVASPARGEMLTLGDL----ECGVCLGLLCEAVTTPCGHSLCRLCLVRALQ-RQTKCPVCRAVCMINAEDHAETRLLTRLAKRAFP-ALYEQRLEETRQEREALKLLLPIFFYNLPI-FPGEALRLHLFEPRYRLMMQRIVNGSRRFAYVP---NYSNYRAKAGDIALIAELKEVRFMRDGRSELEARIAGRFTIAEDPYVEDGTGGLSYCRLKELRD---ESPKSAEASQALRQASEKAREMAHAIFLERRD--IKAVVVDRYGEMPG-------PQTPEALSLWIAA---------VLPTENRQIKHDLLVSTDTSHRLEVC 371 +V++ A+GE T+ L EC +CL ++C+ + PCGH+ CR CLV +++ + KCP CRAVC+I+ +E R+L LA+ A Y +RLEE ++ + + LP+FFYN P PG L LH FEPRYRLMM+RI RRF Y+P + SN G+I L+AEL + + DGR + AR+ R + +VEDGT GLSYC +KE+ D E + A +A R+ EK E L+R D + + + G PG Q E++S W+++ V PT ++L + T RL C Sbjct: 7 SVSAEAQGEPNTVAALSNILECSICLQVVCQPICVPCGHTFCRSCLVSSMKVSRKKCPSCRAVCLIDPVQSSECRMLADLARAVLGVAAYTERLEEATRQLQEIDQTLPVFFYNDPANLPGCLLALHFFEPRYRLMMERITEAHRRFLYLPLRRHTSNTSDLIGEIGLVAELIDSLRLPDGRWHIRARLR-RRVRVQSHWVEDGTLGLSYCTVKEVVDTPVEDGQLAGLVEAARRVKEKVVE-----GLDRLDAATRQELTESVGSEPGLSASYPSVQALESMSFWLSSCIASSALGPVAPTAFDSF--EVLYTQSTGSRLAAC 322
BLAST of EWM29151.1 vs. NCBI_GenBank
Match: gi|299470464|emb|CBN78456.1| (kinase, putative [Ectocarpus siliculosus]) HSP 1 Score: 159.458 bits (402), Expect = 5.115e-44 Identity = 74/130 (56.92%), Postives = 94/130 (72.31%), Query Frame = 0 Query: 89 LTLGDLECGVCLGLLCEAVTTPCGHSLCRLCLVRALQR-QTKCPVCRAVCMINAEDHAETRLLTRLAKRAFPALYEQRLEETRQEREALKLLLPIFFYNLPIFPGEALRLHLFEPRYRLMMQRIVNGSRR 217 L L LEC VCL L+CE V+ CGHS CR+CLV L+R + KCP CRAVC +AED E +L +A+ FP L RL+E ERE +LP+F+YN+P+FPGE+L+LHLFEPRY+LMM+R+VN SRR Sbjct: 32 LPLAALECAVCLFLVCEPVSLSCGHSFCRVCLVNTLRRNKKKCPTCRAVCHNSAEDQPEDVMLANIARTCFPELAAARLKEVEAEREKFMTVLPVFYYNVPMFPGESLQLHLFEPRYKLMMKRVVNTSRR 161
BLAST of EWM29151.1 vs. NCBI_GenBank
Match: gi|299115894|emb|CBN75903.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 153.68 bits (387), Expect = 5.525e-40 Identity = 85/208 (40.87%), Postives = 121/208 (58.17%), Query Frame = 0 Query: 149 LLTRLAKRAFPALYEQRLEETRQEREALKLLLPIFFYNLPIFPGEALRLHLFEPRYRLMMQRIVNGSRRFAYV--------PNYSNYRAKAGDIALIAELKEVRFMRDGRSELEARIAGRFTIAEDPYVEDGTGGLSYCRLKELRDESPKSAEASQALRQASEKAREMAHAIFLERRDIKAVVVDRYGEMPGPQTPEALSLWIAAVLP 348 +L ++AK FP L E+RL ET E+ +L LP FFYN+P+FPG+ L +H FEPRY+LMMQRI+N SRRFAYV N + G IAL A + E F+ D R ++ ++AGR T+ ED +VE GTG L YC+L+ D+ P + L +A+ M + K +V+ +G M P+ LS+W+A++LP Sbjct: 1 MLAQIAKSLFPELLERRLRETEAEKAKFELCLPAFFYNVPVFPGQTLCVHFFEPRYKLMMQRIINTSRRFAYVLPAPVQSTNNDDRNTDQQGRIALEAHVCEAEFLSDDRVMVKIKLAGRHTVVED-FVEAGTGDLHYCQLEPF-DDDPLQDGGADELEDLHTRAKTMCNGFL---GPFKGQLVEAHGRM--PEDAVGLSMWMASLLP 201
BLAST of EWM29151.1 vs. NCBI_GenBank
Match: gi|470422001|ref|XP_004337456.1| (zinc finger, C3HC4 type (RING finger) domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440794276|gb|ELR15443.1| zinc finger, C3HC4 type (RING finger) domain containing protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 150.599 bits (379), Expect = 4.726e-37 Identity = 94/295 (31.86%), Postives = 149/295 (50.51%), Query Frame = 0 Query: 93 DLECGVCLGLLCEAVTTPCGHSLCRLCLVRALQRQTKCPVCRAVCMINAEDHAETRLLTRLAKRAFPALYEQRLEETRQEREALKLLLPIFFYNLPIFPGEALRLHLFEPRYRLMMQRIVNGSRRFAYVP---NYSNYRAKAGDIALIAELKEVRFMRDGRSELEARIAGRFTIAEDPYVEDGTGGLSYCRLKELRDESPKSAEASQALRQASEKAREM----AHAIFLERRDIKAVVVDRYGEMPGPQTPEALSLWIAAVLPTENRQIKHDLLVSTDTSHRLEVCISKLQALRG 380 D EC +CL + + VTTPCGH+ CR CL RA+ T+CP+CR V +++ +H T L + KR FP Y QR EE ++E + +P+F N ++PG +H+FE RYRLM++R + G++ F + + S D+ E+ ++ + DGRS ++ R RF + E ++ G +++ + DE+ + EA RQ E M A I IK ++ + G+MP S W++ +LP N IK +LL T T+ R + L+ G Sbjct: 126 DFECVLCLKVFYDPVTTPCGHTFCRSCLFRAMDHGTQCPLCRGVVHLSS-NHPATVTLKNIIKRLFPDEYRQREEEAQKELIQDETCMPLFPLNAVVYPGMRFPMHIFEARYRLMLRRCMAGAKTFGLINIRRDSSGSSWVPYDVGCTLEINKINILPDGRSYIDTRCKRRFRVLEKWEMD----GYLVGKIQYIDDENMREEEAEIFRRQVQETRGLMNGLLASGICETNEQIKKLLT-QAGDMPTDDL--QFSYWMSTILPV-NTDIKQELLEMTSTTRRFARILDILRIYFG 411
BLAST of EWM29151.1 vs. NCBI_GenBank
Match: gi|1205925402|ref|XP_021306424.1| (LON peptidase N-terminal domain and RING finger protein 1 isoform X2 [Sorghum bicolor]) HSP 1 Score: 139.813 bits (351), Expect = 1.131e-33 Identity = 98/306 (32.03%), Postives = 149/306 (48.69%), Query Frame = 0 Query: 78 DAVASPARGEMLTLGDLECGVCLGLLCEAVTTPCGHSLCRLCLVRALQRQTKCPVCRAVCMINAEDHAETRLLTRLAKRAFPALYEQRLEETRQEREALKLLLPIFFYNLPIFPGEALRLHLFEPRYRLMMQRIVNGSRRFAYVPNYSNYRAKAGDIALIAELKEVRFMRDGRSELEARIAGRFTIAEDPYVEDGTGGLSYCRLKELRDES-PKSAEASQALRQASEKAREMAHA-IFLERRDIKAVVVDRYGE---MPGPQTPEALSLWIAAVL---PTENRQIKHDLLVSTDTSHRLEVCISKL 375 + A R + D EC +C LL E VTTPCGHS CR CL +++ KCP+CR V I + + L+ + +R FP Y +R E A L+P+F ++ + P + + L++FEPRYRLM++RI+ G+ R V + D E+ E + DGR LE RF I + +D G ++ LRD P+ ++ + L + + +A EMA A I R I+ R+ + MPGPQ PE S W+ ++ P++ + D+L DT R+ I L Sbjct: 149 NIAAGARRASLDRTDDFECTLCFKLLYEPVTTPCGHSFCRSCLHQSMDHGNKCPMCRTVLFIGPRTYPLSVTLSNIIQRNFPQEYAERRSEHETMTYAGVDLMPLFVMDV-VLPSQKMALNIFEPRYRLMVRRIMEGNHRMGMV-TIDSATGTVADCGCEVEILECEPLPDGRFYLEVEGTRRFRILRS-WDQD---GYRVAEVEWLRDRPLPEGSQERRELMEMANEASEMARAYIRRARETIRTARRTRHLDLEGMPGPQDPEKFSFWLVNLISLRPSD----RLDMLRLRDTRERISSSIRLL 444
BLAST of EWM29151.1 vs. NCBI_GenBank
Match: gi|194705368|gb|ACF86768.1| (unknown [Zea mays]) HSP 1 Score: 140.198 bits (352), Expect = 1.465e-33 Identity = 95/291 (32.65%), Postives = 140/291 (48.11%), Query Frame = 0 Query: 91 LGDLECGVCLGLLCEAVTTPCGHSLCRLCLVRALQRQTKCPVCRAVCMINAEDHAETRLLTRLAKRAFPALYEQRLEETRQEREALKLLLPIFFYNLPIFPGEALRLHLFEPRYRLMMQRIVNGSRRFAYVPNYSNYRAKAGDIALIAELKEVRFMRDGRSELEARIAGRFTIAEDPYVEDGTGGLSYCRLKELRDESPKSAEASQALRQASEKAREMAHAIFLERRDIKAVV-----VDRYGEMPGPQTPEALSLWIAAVLPTENRQIKHDLLVSTDTSHRLEVCISKLQ 376 + D EC +C LL E VTTPCGHS CR CL +++ KCP+CR V I + L+ + +R FP Y +R E A L+P+F ++ + P + + L++FEPRYRLM++RI+ G+ R V + D E+ E + DGR LE RF I + +DG LK++ P+ ++ + L + + A E+A A RD +D G MPGPQ PE S W+A ++ + D L DT R+ IS L+ Sbjct: 187 IDDFECTLCFKLLYEPVTTPCGHSFCRSCLHQSMDHGNKCPMCRTVLFIGPRTCPISVTLSNIIQRNFPEEYAERRSEHETMTYAGVDLMPLFVMDV-VLPSQKMALNIFEPRYRLMVRRIMEGNHRMGMVA-IDSATGTVADCGCEVEISECEPLPDGRFYLEVEGTRRFRIVRS-WDQDGYRVAEVEWLKDI--PLPEGSQGRRELMELANGASELARAYIRHARDTVRTARRTRHLDLEG-MPGPQDPEKFSFWLANLISLRPSD-RLDTLRLRDTRERISSSISLLR 470
BLAST of EWM29151.1 vs. NCBI_GenBank
Match: gi|1205925400|ref|XP_021306423.1| (LON peptidase N-terminal domain and RING finger protein 1 isoform X1 [Sorghum bicolor] >gi|992281033|gb|KXG39102.1| hypothetical protein SORBI_3001G331600 [Sorghum bicolor]) HSP 1 Score: 139.813 bits (351), Expect = 1.637e-33 Identity = 98/306 (32.03%), Postives = 149/306 (48.69%), Query Frame = 0 Query: 78 DAVASPARGEMLTLGDLECGVCLGLLCEAVTTPCGHSLCRLCLVRALQRQTKCPVCRAVCMINAEDHAETRLLTRLAKRAFPALYEQRLEETRQEREALKLLLPIFFYNLPIFPGEALRLHLFEPRYRLMMQRIVNGSRRFAYVPNYSNYRAKAGDIALIAELKEVRFMRDGRSELEARIAGRFTIAEDPYVEDGTGGLSYCRLKELRDES-PKSAEASQALRQASEKAREMAHA-IFLERRDIKAVVVDRYGE---MPGPQTPEALSLWIAAVL---PTENRQIKHDLLVSTDTSHRLEVCISKL 375 + A R + D EC +C LL E VTTPCGHS CR CL +++ KCP+CR V I + + L+ + +R FP Y +R E A L+P+F ++ + P + + L++FEPRYRLM++RI+ G+ R V + D E+ E + DGR LE RF I + +D G ++ LRD P+ ++ + L + + +A EMA A I R I+ R+ + MPGPQ PE S W+ ++ P++ + D+L DT R+ I L Sbjct: 174 NIAAGARRASLDRTDDFECTLCFKLLYEPVTTPCGHSFCRSCLHQSMDHGNKCPMCRTVLFIGPRTYPLSVTLSNIIQRNFPQEYAERRSEHETMTYAGVDLMPLFVMDV-VLPSQKMALNIFEPRYRLMVRRIMEGNHRMGMV-TIDSATGTVADCGCEVEILECEPLPDGRFYLEVEGTRRFRILRS-WDQD---GYRVAEVEWLRDRPLPEGSQERRELMEMANEASEMARAYIRRARETIRTARRTRHLDLEGMPGPQDPEKFSFWLVNLISLRPSD----RLDMLRLRDTRERISSSIRLL 469
BLAST of EWM29151.1 vs. NCBI_GenBank
Match: gi|1026034213|ref|XP_016563272.1| (PREDICTED: LON peptidase N-terminal domain and RING finger protein 1 [Capsicum annuum]) HSP 1 Score: 138.658 bits (348), Expect = 5.814e-33 Identity = 103/291 (35.40%), Postives = 144/291 (49.48%), Query Frame = 0 Query: 93 DLECGVCLGLLCEAVTTPCGHSLCRLCLVRALQRQTKCPVCRAVCMINAEDHAETRLLTRLAKRAFPALYEQRLEETRQEREALKLLLPIFFYNLPIFPGEALRLHLFEPRYRLMMQRIVNGSRRFAYVPNYSNYRAKAGDIALIAELKEVRFMRDGRS--ELEARIAGR---------FTIAEDPYVEDGTGGLSYCRLKELRDESPKSAE-ASQALRQASEKAREMAHAIFLERRDIKAVVVDRYGEMPGPQTPEALSLWIAAVL---PTENRQIKHDLLVSTDTSHRL 368 D +C +CL LL E +TTPCGHS CR CL +++ R +CP+CR V I+ A + L + ++ FP Y +R E LLP+F + I P E L L++FEPRYRLM++RI+ G+RR + + D A E+ E + DGR E+E+R R + +AE ++ D EL D + K+A A Q LR A E A +RR +A + G MP PQ PE LS W++ + PTE K DLL DT R+ Sbjct: 197 DFDCTLCLKLLYEPITTPCGHSYCRACLFQSMDRYNRCPLCRTVLFISPRTCAISVTLNNIIQKTFPEEYAERKAENDSLINLGVDLLPLFVMEV-ILPCEKLALNIFEPRYRLMVRRIMEGNRRMG-MAVHDPTTGSVADYACEVEIVECEPLPDGRFFLEIESRRRCRIIRHWDQDGYRVAEVEWIHDICPAEGTRERHELLDTANKAAAFAQQWLRNAQEVA--------ADRR--RAELFRAEGLMPSPQDPERLSFWLSTLTNRRPTE----KLDLLQIIDTHERI 471 The following BLAST results are available for this feature:
BLAST of EWM29151.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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