rna1498, rna1498 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1498
Unique Name	rna1498
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2944
Alignment location	CM002457.1:780105..782512 +

Link to JBrowse

Properties


Property Name	Value
Product	sucrose transporter
Orig transcript id	gnl\|cribi\|Naga_100007g83.6507.mrna
Orig protein id	gnl\|cribi\|Naga_100007g83.6507
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:780105..782512 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g83	gene1446	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1498	rna1498-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29180.1	cds1495	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:780105..782512+
coding sequence from alignment at CM002457.1:780105..782512+

mRNA sequence

>rna1498 ID=rna1498|Name=rna1498|organism=Nannochloropsis gaditana|type=mRNA|length=2944bp
ACCAGACCACTTTTCTATTCTACGGCCATTCCACAGAGGTCCACGCCGTT
GTTAAGAGCAAAAGAGTGCATACACACCATGGAAGTGCTTTCAGAGCAAG
ATCAATGGAGAGATGGTATAGTTTAGGTGCTGCGTAGATACCAAAATGTT
GAGAGTGGAGTCCGCACTTCGTGTGGAACCCAGGATCGACGAGTCGCTGA
ATAAACGATAGCTTCTGCAACTCAAAGTCAATGCGACCCACCCCCATCCC
CGTGAAATGTTCGCCATCCACCGTCCACTTGTACGTGTTCACAGAATGCC
ATTCTCAAGTAAGGAATGCGTCGAGTCCAGCCTCTCTAGCCTGTCGGTGC
CCTCAAACTTTCGTTCATCGGCTCCGGCTGCGTCTGCAGATGCCAAGCGC
AAGGAGGAGGAGGACAGGATGAACGTTATCGACGAGTTGGAGCTCCACCC
CACGCATAACATAGCGCGCAAGAAACACTGTGCGTGGCGGAAGCCTTACT
ACTTCTGCAGCACGCTGAAGGGCCATAAAAACGACATTTACTGCATGAAG
TGCAGGAGATGGATTGCTGGCGGCGGGATTTCCCATGTCAAACAGCACGA
ATCCAGGCACCATGCCGGGTGCGGCGAGAACACGATCGACAGTGGTGCTG
ACATGCAGCAACTTCAGGTGAATCAAACTGTCGCGTACTCCGCAGGGGAA
CAGGCGCGATTAACTGCCAAGCTTGTTGGCTTCCTCATCCGCGACTCACG
TCCCGCCGCGCTGACGCTTGACAAGGACTTTCGCGCGTTTCTTCTTGCCC
TGAACCCTAAGTTCATCATACCAGACACCAAGAAGATCAGGACGGTCACA
AATGCCATGTATAACGCAGCGCGGGATACGGTCCTAGACTACATCCATCC
GCTCAAACAGAAGGGTCCGTCGGCCCTCCGCGGCATGGTAGCCTGCGTTT
CTCTGGATATGTGGACGGACGCGACGCAAATGACGTACATCGGCGTGCTT
CTCCACACCATTTAGTGTACGAATGGCGGTTTCGAGAAGAAGGAGTTTTG
TCTGGCGTGTAAGGAGGTTGAGGCCGACCACGTAACAGCCCAGATCGTAC
AGCAGTACCTGGAGGCGACGGTGAAGGAGTTCGGGATACCTGTCAAAGCA
ATCTTCCGAGTTGTCCACGATGGTGACGCCGAACTCATCCAAGCCGTCCG
CAAGGTCGGCCTCTCCTCCTCGCTGTGCTTCACCCATAGCCTTCAGCGCA
CCATAGCGGTGTCTTTAAAGGGAGAGGACGATATCCTCACCACTCTGAAG
CGCGCCAGGAATGCTGTCTCTGGCGCCCGCCACAGCAACGTCCTAGCGGC
CTATCAACGCGAAACACAGGTGTCGACACAGCAGCATGGGACGTCTCCGA
CGGCGCACGCGCTGGGCGACAATTGCCAGCCCGCAGCGTCTGAGGTCTCC
GAACCTGATGAAAGGCAGAAGTCGGGAGACTCCTCCCTCCTGGGGCAGGT
CGTGGCCTTATATAAGCCTTTCCGAGGGTTGATCACGGAGCTGCAGGCGG
ACGATGTTACGTCACCCCTCGGTGTGCCCGCATACCTGGAACTGGTCGAA
GGCCTAAGAACAACGCCGAATATTGCGGAGACGTCTGTCGCCGGAACAGA
CTATCCCGCCTCATCCACCAGGCACCTCATAAGCGTCTTGCACCCCTCTG
TACAAAGATTAGCCAGGCAAGCGCGCACGGACCTGACGCGCCCATTCAAG
CTCCGGCGCATGCTGCCGCTGGCGGTGGCGCCGTGTCTGGACCCGTGCAC
GAAGAACCTGAGGGCCATGGGTGCGCCCGACGACGTCTTGAAGAAAACGT
GGAGAGTCATACAAGAGCAGACGGACCGGACAATAACGGTGCTCAAGAAG
GCGAATGGGTATGTGGAGGGGCGCGGCGAGAAGCGGGGCTGTGAAGGGGA
TTTCAAGACGACTAGTAGCTTGAGGGCCCTCTTCTTCGCGCAGAGCAACC
ACTATAATGACTTGGCGGTAGTGCATGACATGGAGCCCGCGCTCGACTTC
GAGGGCGTGGAGATAGAGAACAGGGAGGACGTGGCGTCGGAGATCACCAA
TTATCTATCCAAGTCAGTGCAAACGATAGGCCTCGAGAAGATTGGTACAG
TATTGGTGGAATCTGCGCGAGGGCTGTCCCGTACTCACCATCGTGGCCAT
GCATTACCTCTGCATTCCCGCGTCGTCGTCAAGCGTGAGGCGGCTGGTCT
CACGGACGAGGCTCATCGAGTCGGGGCCGCAGAAACTGCCTGAAACGTTC
GAAAAGCTCACTTTTACACGCATCAACTGGGACGAAAGCCTATACAATGT
GTGGCTCGAAGATGAGAGGACGGGGGATGATGAGAGCAAGAGTGGGAACG
CGACAGACGAGGAGGCAGAAGGAGAGGAGAAGTTAGAGGCACCGTGGCCA
GGTTCTGAAGCGCAGGGTGCGAGTGAGTTGGATAGCGAGATTCGGGCGGA
ATATGACCTCGGATTGGTTGACTTGATGGGTTACAATATTGATGAGCCCG
ACGATGCCTTCTGGGACGAGCTCGGGGAGGAAACGGAGCCATGGCTGGAC
ACTGAATAGCTGGAGAGGATTGCTATGATTGTGTCGAGTGATTGTTGGTC
GAACTTTAGCCAGTTTAGGTTTAATAGGGAGTCAAGAAAAGGCATGTTCA
TATTGCTCTTTTTCCGAGATGAGAAAAGCAGATGTATATGGAAAAGTGTT
TGAGTAATGAATGAAGGAGACAGGAGGTTAATAGGGAACAAAATGTGATC
AAATCAAAGTATTGTGCCTTGCTCCCAATGGAGAGAAGACATATGCATAC
AACATGAAGTTCTAACAGAGATGAATGGGAAGTCAAGCCGTAAGGAAGAT
TCCCATCACAAATAACGAAAAACAAAGGCGCTCAGGCGCTCAGA

protein sequence of rna1498

>rna1498-protein ID=rna1498-protein|Name=rna1498|organism=Nannochloropsis gaditana|type=polypeptide|length=494bp
MWLPGRNNLSSTTGKSEVTPFLPPLQASMDSTEVDSDSEESRSVKCSPAQ
LYPTFAFLGVQMCWSVAYAYITPILVTFNLNIETVGLVWCMSSLASCATV
PLLSAASDFTQNSWGRRRPYMAMFLLVGGGGLLLLAYADRIGVWFGDIGG
QQRNALSMAVMGLILSQVGLDGIQCMERGLCTDTLDADALQGVNAFFALQ
GSLGRVVGFGLGAANLGKAPGLSYLGDQIQILFLLSAFLLFLTTSTTLLT
AREKRFIPQLYELFNASVTSSGKRALFGMKSLPKAVRLAAVSNLLAWSSF
ALLFYYGSYFYGSFIFGGDPEDTGVIDSIYERGVQSASFGFLLMAVVGSM
MSLGLGFVTAKVGIKTMWVSTLAFAAATFLGFFFLRPGDRGAALALSACL
GLPLAASYQCPWAIVTVAVRRSENSALYCSLFRSLSEVLPFALQGLIGSA
LLSVFQGSARSVFAAASVLMAAAAVHTYFFVLDVQDVEEYEEEI

mRNA from alignment at CM002457.1:780105..782512+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1498 ID=rna1498|Name=rna1498|organism=Nannochloropsis gaditana|type=mRNA|length=2408bp|location=Sequence derived from alignment at CM002457.1:780105..782512+ (Nannochloropsis gaditana)
TCTCGAGTCTGTCCGCCCCATTTACTATAGGAATGATTTTACTGACTTGA
CAGTAGTCGCAGAGGAAGAATGGCACTCAAGAAGGTGGGAGGATGAAATA
CGTTTACCATTTCCTTGAAGGTGACAGAgtacccccccttccgccggGGC
CCATCGTCATCAGTTGGCTCCGCCGGTGGCCGCGCCCCTTCTGTTCGTGC
CTCTGGAGATCCCTCGATCTGACTCCCACCACACCGATGGCCTTTCAACA
CACGCACACGCTTGAGAGATTGCGAGCAAGGCGTTGCTACACGCGACTTA
TAAATATGATGCCAGCCAATCATGTCTTTCACCTTTTCACAAAATAGGGA
TCCTCCACTGGGTGTAATTCATGCGATGAATGTGGTTGCCTGGCAGGAAC
AACCTTTCCTCTACAACCGGGAAAAGCGAAGTAACGCCCTTTTTACCTCC
ATTGCAAGCTTCCATGGACTCAACTGAGGTTGACAGTGACTCGGAGGAAA
GCCGCTCTGTTAAATGCTCACCTGCGCAGCTCTACCCGACATTTGCCTTC
CTAGGAGTACAGATGTGTTGGTCGGTTGCGTACGCGTACATTACTCCCAT
TCTTGTGACATTCAATTTGAACATAGAAACAGTGGGTCTTGTGTGGTGCA
TGAGTTCATTGGCAAGCTGTGCGACGGTGCCTTTGCTTTCGGCAGCGAGT
GATTTTACGCAAAATtcgtgggggcggaggcggccttACATGGCCATGTT
CTTGcttgttggaggaggggggctgcTTTTACTGGCTTACGCGGACAGGA
TTGGTGTGTGGTTTGGTGATATCGGTGGACAGCAACGGAATGCCCTAAGC
ATGGCTGTAATGGGGCTTATCTTGAGCCAAGTCGGCTTGGACGGGATCCA
GTGTATGGAGCGAGGACTATGCACCGACACACTCGACGCGGACGCATTGC
AAGGAGTCAATGCTTTTTTTGCCCTTCAAGGCAGCTTGGGCCGAGTGGTT
GGCTTTGGGCTGGGTGCCGCAAACCTGGGAAAGGCCCCAGGGCTGTCATA
CCTGGGAGATCAGATCCAAATATTGTTTCTGCtctccgcctttcttttAT
TTCTTACAACAAGTACCACGCTCCTTACTGCTAGAGAAAAACGGTTCATA
CCGCAGCTCTACGAGCTATTTAATGCATCCGTGACCTCCTCTGGCAAACG
CGCGCTATTCGGTATGAAATCCTTGCCCAAGGCAGTTCGCCTCGCAGCAG
TAAGTAATCTTCTGGCCTGGAGCTCTTTCGCATTGTTATTCTACTACGGA
TCCTACTTCTACGGCTCCTTTATCTTTGGAGGTGATCCGGAAGACACTGG
AGTTATCGACAGCATCTATGAGCGCGGTGTCCAGTCCGCTAGTTTTGGAT
TCTTGCTCATGGCTGTCGTGGGGAGCATGATGTCGCTTGGCCTCGGATTT
GTTACAGCCAAAGTAGGAATTAAAACAATGTGGGTATCCACCCTGGCGTT
TGCTGCAGCTACTTTTCTCGggttctttttccttcgccCAGGGGATAGGG
GCGCAGCGTTGGCTCTTTCCGCCTGTCTGGGTTTGCCTTTGGCCGCTAGC
TATCAGTGTCCGTGGGCGATAGTGACAGTAGCTGTACGACGTTCGGAAAA
TAGCGCCCTGTATTGTAGTTTATTCCGAAGTCTGAGCGAAGTACTTCCCT
TTGCTCTACAAGGTCTGATCGGGTCAGCCCTTTTAAGCGTTTTCCAAGGA
AGCGCTCGATCTGTCTTCGCAGCGGCCTCTGTGCTCATGGCCGCGGCTGC
TGTGCACACATATTTCTTTGTTTTGGACGTtcaagacgtggaggagtaCG
AAGAAGAGATTTAAACGCTTGTCATACTGGAGTGTATACGCACTAGTGTC
GTCATGCACCTCTTTAGGTGCTTGCAAGACGATGCTGTACATCAGGCGGT
ATGAGGGATGTAAAGATTTCATACCTTGCGCCGAGAAAGCGAGCATAAGA
GAAACCCTGGACATAGCATGAGCAAGTAAATAAGATTTTTTTTTAGATTG
TCTCGGACAGAGTTGTAGATGTCTTGAGGGCTGGGCGTGGTGTGGGGTTG
CGGTGGCAGCGAGGTCgtcggggcgggaggttgaaTGGGTCGGCCACAGG
CCCGGAGGCGCCTGCGCGTTCAGGACAGAAGACACACTTTTATGAAATGG
AGCATTAATCTCCTGTATACCATCGCGTACCTGCGTAGACCATCTATTAC
CTCTCTAATCTTGGTCGCGTTTTCACGGACCGGGGGTCGGACTTCTGCTT
TGCGAAAAgtcttttcccgcctcgcCATCGCATGAAAGGAGCGAAAGCGA
GAACACAAAACGAAAGTCCTGAAATGCACCCGTCGCTCAGGCGGCCAGTG
CGAGCAAA

Coding sequence (CDS) from alignment at CM002457.1:780105..782512+

>rna1498 ID=rna1498|Name=rna1498|organism=Nannochloropsis gaditana|type=CDS|length=1485bp|location=Sequence derived from alignment at CM002457.1:780105..782512+ (Nannochloropsis gaditana)
ATGTGGTTGCCTGGCAGGAACAACCTTTCCTCTACAACCGGGAAAAGCGA
AGTAACGCCCTTTTTACCTCCATTGCAAGCTTCCATGGACTCAACTGAGG
TTGACAGTGACTCGGAGGAAAGCCGCTCTGTTAAATGCTCACCTGCGCAG
CTCTACCCGACATTTGCCTTCCTAGGAGTACAGATGTGTTGGTCGGTTGC
GTACGCGTACATTACTCCCATTCTTGTGACATTCAATTTGAACATAGAAA
CAGTGGGTCTTGTGTGGTGCATGAGTTCATTGGCAAGCTGTGCGACGGTG
CCTTTGCTTTCGGCAGCGAGTGATTTTACGCAAAATtcgtgggggcggag
gcggccttACATGGCCATGTTCTTGcttgttggaggaggggggctgcTTT
TACTGGCTTACGCGGACAGGATTGGTGTGTGGTTTGGTGATATCGGTGGA
CAGCAACGGAATGCCCTAAGCATGGCTGTAATGGGGCTTATCTTGAGCCA
AGTCGGCTTGGACGGGATCCAGTGTATGGAGCGAGGACTATGCACCGACA
CACTCGACGCGGACGCATTGCAAGGAGTCAATGCTTTTTTTGCCCTTCAA
GGCAGCTTGGGCCGAGTGGTTGGCTTTGGGCTGGGTGCCGCAAACCTGGG
AAAGGCCCCAGGGCTGTCATACCTGGGAGATCAGATCCAAATATTGTTTC
TGCtctccgcctttcttttATTTCTTACAACAAGTACCACGCTCCTTACT
GCTAGAGAAAAACGGTTCATACCGCAGCTCTACGAGCTATTTAATGCATC
CGTGACCTCCTCTGGCAAACGCGCGCTATTCGGTATGAAATCCTTGCCCA
AGGCAGTTCGCCTCGCAGCAGTAAGTAATCTTCTGGCCTGGAGCTCTTTC
GCATTGTTATTCTACTACGGATCCTACTTCTACGGCTCCTTTATCTTTGG
AGGTGATCCGGAAGACACTGGAGTTATCGACAGCATCTATGAGCGCGGTG
TCCAGTCCGCTAGTTTTGGATTCTTGCTCATGGCTGTCGTGGGGAGCATG
ATGTCGCTTGGCCTCGGATTTGTTACAGCCAAAGTAGGAATTAAAACAAT
GTGGGTATCCACCCTGGCGTTTGCTGCAGCTACTTTTCTCGggttctttt
tccttcgccCAGGGGATAGGGGCGCAGCGTTGGCTCTTTCCGCCTGTCTG
GGTTTGCCTTTGGCCGCTAGCTATCAGTGTCCGTGGGCGATAGTGACAGT
AGCTGTACGACGTTCGGAAAATAGCGCCCTGTATTGTAGTTTATTCCGAA
GTCTGAGCGAAGTACTTCCCTTTGCTCTACAAGGTCTGATCGGGTCAGCC
CTTTTAAGCGTTTTCCAAGGAAGCGCTCGATCTGTCTTCGCAGCGGCCTC
TGTGCTCATGGCCGCGGCTGCTGTGCACACATATTTCTTTGTTTTGGACG
TtcaagacgtggaggagtaCGAAGAAGAGATTTAA

Synonyms

Publications