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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100007g87.6546.mrna |
| Orig protein id | gnl|cribi|Naga_100007g87.6546 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:772333..773130 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1494 ID=rna1494|Name=rna1494|organism=Nannochloropsis gaditana|type=mRNA|length=6247bp
GCACCTCTGCAAAAACCTAGGGCCGAGCTAACATCTTAGTAACAACAATT
TGTTGAATTTGTCAGAAAACGATCCAGTTCGCGCTGGGATTTGTCATTTC
AGCCAGATTCTGGACGTACTTTGAGGGAGGTTGGCGGACGAAAGCCTCTG
TGTACATATAGCTTGCAAGTAGGGTCACTGTGGAGCAGGAGTCATGACCC
ACGACAGTACATGGCAGCAGGCCACGTTGCTCTCGTCTCTGTGGGAGTGG
TTCAGTGAGCTCAGACCCGATGAACGGATGCAGGCTCTTACTATCGATGA
CCCGCTGTGGATTCGGTTGTACTTGAAGCTTTTCAAGCATGAGCTAAAAT
CTCGCAATAAGAAGCCAGGAAGACATTTACAGCAGCAGCACGAGCAACAA
GAGCAGCAACGAGGTCCATCCTCACTTTCTGCATCATGTCCGTCCTTAGT
AGGAACACATTCCCCACCAAAGCAACAGCAACAGCACCCTCCGTCGTGCT
ATACGGTAAAGCGTGACAAAATCAACTACATGTACGGCCGCCTCCTCAAG
CAACAACAGCAGCAGCATGCTGCTGCGAGCGCTGGGAATGGCTCTCGTGC
TCTCGCAGCCTGGGGTGCAGCGGGGGATCTGGATGATCTTGAAGAGAACA
AAGGAATGGAAGAAGACGATGATGAGCTGGATTTTGCTCTTGCAGCAGAG
GAAGAAGAGCACTCGTTGATTGAGGGGTATAGAATACCATGGAGCCAGCA
GGGGGACGTGAGGAAGCGTGCTGGGAGGAAAGGCGAGCGCTCGAACTCGG
ACATTGACGGCAATGATATGAAAAGAGAACAGGGAAGTCAGGTCACACTA
ATGTGTGCGGATCGATTGCTGCAAAGGAGTCTGCGTGTCTGCACTTTGGG
AGCAACACCTTTGGACACGCTGACTCTCAGCCAACCCGCTGTCGAAGATG
CCGAGGCCCTTTACCAACTCTTGCGGGCGGTGACGGATGGTGCTTTCCTA
TCCAAGCCTCTTCCGACGGCCACAGCAAAGCAGCTTAGCTTACAATCGTC
CGCTGTGGCGGCGATTAGTGGTGGGGGTCCTGGTTTGTCAGCGGCGGCAG
TCGCGAGCGTCTTGAGCGGCGGGACTGGCAACACCCTCAACTCCTCAAGC
CCTACACTTGCTTCGCATACCGGCACAACTGCGCTTCCGATGGTCTTGCC
CGAGGCCCCCTGGTTACAAGAGTGCATGGGTGAGGATAAAGAGACAATCC
CACTGCGATACTTGCTGGTGAGCCGACTCGAGCTCTCTCTTTGGGTTGCC
TACTGGCGTCGTATGAATCGGTGTTCCGTCTCCGGGCCCAGGGTACCCGT
AGGACTAAAGGGAGTGACGGAGCAGATAAAACATCTGCAAGAATTTGCTC
TCAAAGCTGATCCTGCTCAACTGGCAGCCCTTTTTGAAGGGCTACGTCCG
GCTCAGCACGTACTACTGCAGCAGCAGCCCTTGAAGATGACGGGGGATAA
AGTAGTGAGATGTCGGGAGGGAGGCGAGCATAGTTTGGATGGATCAGGAA
GTATGAGAACAGCTCAACTAATGATGGAGCGTTTGCTGTTGATTCCTCTT
CACTGGGTCTATCAAGATGAGGGCAAAATTGTCCGGCGCGTTTTGGAGCG
AATCCAGGCAGCCTGTGCGGACTTGGTGGCTCAAGAGCTCTTGATGGAGG
ATGAGGCCAGAAGTAACATGTCCACTGATACTGGATCCTGCAATCAAGCC
AAGAAGAAAAAGAAAAAGAAGCAGTCTCAACAACAGCAAAGAGTGAAGGA
GCAGCTGAGGCTTGAAAAACAGGGGGTCGTGCCAAGAACGTCGCTGCCAA
AAGTTGGTGAATCGACGATTGATAGGGGTCTTGGAGCCGTAATGAGCAAT
GGTCTGAGGCTAGAGGGAACGCCGGATGTAGACGGGCATCAAATGGAAGA
ACAACTTTTTGCAAATCGAAGGAAGATCAAAGGAGAAGACGGTGTGGTTG
ACGAAGAGATGAGGCCTTTTTCCGGGTCCTCGGCGTTCAGAATACGTCGA
TCCACCGATAGTGCGAGGAAGACGACGGGCTTAGTCACGGCGGTGGTGAA
AGAGGACCGGGAGGACCAGGGTGACCTATGGGAGGAGGTAGGACGACGCG
GCACAGTGATGAAAAATCCATCGCTTCCTCCGTCATTGACCAGCAAAACG
GCCTCGGCGCACATGAATTCGAAGTCGGGCGACAGTTCCAAGCAAGTGAC
AAGCAAACTTTCAGACACAGAGGTAAAGGATACTTTTTTGCAGCCGTGTT
ATGCGGAGTGCGGAACAGGACGTGCTGGGGGACGCGACAGTACTGGACCG
ATCGAGGCTTGCCGCAACGTTGCTGGTGACAATCTGGTTGAAGAAATCCA
CAAAGTAAAAAAGGAGAATGGTGAAAGCGCCGACGTGTCGGCACCTCTGC
GGACTGATGGGGCTCAGGCCATATCAACAAATGCTGCAACAATCCTGGAA
GCTGCAGGCGCAGCATCTTTGGTGGCAGCAGAAGACCCATCGAATTCTAG
CCATTGCCCGGCTACAAAGGGCTGTTCGTCGGCTCTTTCGCCATCACATA
CACCAACCTCCCCACCCTGCGTCCCTCCGCGCCCCTTGTATCTGTCCTCA
GATCAACCAGCTATAAGTGATCCCACTTCTATAGAGCCGGCGCCTGCCTT
TGTCCATCTCATGGTCGACCATGCCGCTCCCACTGATGCCGACCCCACAC
CTTCCGTCCCTAGCATCAAAGTGTGCCCCAATCGGGTGAGCGATGTGACT
GAGGATGAAAAAGGAAAGGAGATGCAATTGGCAGACCGGATTGGTACCGA
AGGCAAGGCGGACGCAGGGCCTGTGGACTGCCAGGAAAATGCGCCACCTG
TGGATGCGGATGGTCAGACGTCGGCAGGAGTGGTGGAGAAAGCACGAGCT
AAGAAGAAAACTCACAACAGGCGAGAGTACAAGCAACGGCGACAGATGCG
TGACGCCATTTCGAGCATATTGACAGGGTTATTGGACAAGGTGGACCAGA
TCGTCAGTGCCGGTCAAGAAGAGATGCAAGGAGACCATCCAGCGTTCAGG
AAAGACGCGTTTTCTATGTCTGACGACACCCTGCATCAAGGCCCGCTCAA
GCCAAAATATTACAGGGACGGTCAAAGGGTGGATAAGGCCTCAATGAACA
AGGCTACATCGCGGGCGCAATATGCCGCTTCCGGCATCAAGGCACAGGGA
ATTCAAAAAGTGCCTGCACCTAAATCCGTGCAGCGACAGCGCCCAGATCA
GGAGCAGGAATATATAGACGTGCATCAGGTTCATTGCCAGCCTTTAGCAA
GCTACGTTCATCAACAACCAAATGGCAGGCTTAAATACAAAGCCTATGAC
CACATGAAAGGCGCCCCCTGCTGCGGCTCTGCCTCATTGCCTCGGATGTG
TAATTCGCAGCATGCGCAGCACTTTCCCGTTCACGGAAACGGGCGGGCAT
GGGGATCACAGGGTTGTGGAGGAGATGCTGGTGTCCACATGTTTCCGTCA
AGCCGTCTCCCTCTCTACCCACGCATCCACCAGTACCACCACAACCCGCA
GTACTATCAAGAGTATCCGCGAGCACGCCGGGGTGGGGTTGAGTTATGTG
CGACATCGATGGGGGCCAACGGTGGGCAGCGAGGGCAGCTCAATGATGGC
TCAGATGGCTGGAAGGAGTGTAACGACCACCGAGTGGTTTTTCAGTACCC
TTTACTTCAGCAGACTCCAGTCCAAGGCCTTCATAACCAGTATCGACATC
ACCGTCAGCACTTGCAGGCACAACGCAGGCTCAAGAGTAAAACTGAGAGA
AGTGACGGCTACGGTACCACGACGGGGGATTTTGAGTCGGTTGTTCCTCC
CCCTCTCGTGCTTCAGCAGCCTCATGAGCTTTACGCCCTGGATATGGAAG
CAGAGCAAGCGCGGCTTGCTTACAATCAGGGAATCGATGCTATGCGTTCA
CAGCTTTCAGAAAATATTGCTGATTTTATGAAAAATCGCGAAACGAAAAT
GATGGAACATCGGGCTGCGCGGGAGAGGATTCTTGAAGAAGTGCGTTCAA
TTATTCAGAGTTTGTGGGCTGGGTCAAGAGTAGAATTATACGGGTCCTGC
TTTACTGGTCTTGATTTGATCTCAAGCGATTTGGACCTAGTTGTTTGCGG
TTTGAAACCAGCAGGTACTGCATCGCCCGCCCTATCAGCGCTTAGTATTA
AGACTCCACAAATGAGTCGGCAGCAAGACCGAAAGCAAGGGGGAACCACG
AGTTCGTCATCTCCCGAGGGTACTTGTAGTATAAGCACGACCACTAGTGG
CAAAAGCTGCATTAGTAGCAGCAGCACGACCAGCACCACCACCAGTAACA
GTACTGGTTGTACCACTGGACAGTCTAGCGCCGCATCATCTGTTGCTGGA
GAGGAGGAGGAGGAGACAGACAACCATAGCCACAGCCAGCTGAGCGATAC
AAGTAGTAACAACACTACCGCCAGGACCGCCACGGGATCTCGCTCTCCCG
CCCTCTCCTCACCGGCTTCCTCTCCACGGTTCGGTCCTGCTGTCTCTTCG
ACTACAAGCGCAATAACGAGCTCGACAACGCCTCCTCGCTCGCTGCCTCC
CGGACACAGCGAGTCAGCAAGACTCTTATACCAGCTTGCAGGAGCATTGG
AAGGGCGAGCCTGGATCCGCTCTATCAAAACGATCGACACCGCATTTGTA
CCTGTCATCAAAATCCTTGCCGACCCCGCTGCGCTTTCCACGGGACAAGA
AAGTCTTGCGCCTGGGTCCGCGACAACATGGGTGCCAGTGGACATCTCTT
TGGAAGGCCCGCAGCACGGCGGCATTGCCAGCTCCTTGCTCATCCGCGAT
CTCGTGGGTCCAGGAAAGCCCTACGCGCATGCTGTGCCTCTGACGCTGGT
GCTGAAGGCGCTTCTGATGCAGCGGGGCCTGAATCAACCTTGGTGCGGCG
GCATTTCTTCTTATGCACTCATGCTCATGGTCATCACTGTTCTCCAACAG
TTTGAAAGGCCCGAAGAAGCGCAAGCAAATGTTATGGCTATTGCACGATC
TGTGGATTGCATTAAACGCCGTGTTCTTCAGTCCCATTCAAGCAGTGATG
AGAAAAATTGTGGGACAAGGACCAGTATTCGTGGTGAAAATTGCGTGGAT
CATATCATTCCATCGAAAGAGGGCAAAAGAAGTCAGCGAGATGATGCATC
AAGCAACACGGATGCAAACGGTACCATGGACTACGGGAAAGCAGTGCGCG
GCGCTCTGCACAGTCTGGAGGATGAAGTTCACAAGGGAGAGGAGTACTTC
GAAGTCAGACCTCCCCCTCCGCTGGTGACAGGTGGCTACGGCAGCCCTGC
TGAGGTCTCTTATCGGCTCTGGTCCCAGTTTGCCGCGGCGCAGACGTCAG
AAGGCCGCATGGCTGAGGGGCATGAAGCTGGGAAACAAGAAAGTAACTCA
CATGTTCACCGCTTACCAGCAGGCTTCTTGCTGACATACTTCCTAGAGTA
TTACGGACGGATATTCAATCCTCAAGCGGAGGGCATTGCGGTAGATCAAG
GGTATGGTCTGACCTTTCCGCTCGGTGAATTCTGCGCAGCTCGAGGCTTG
CCTGTCGTTGCGGACCCCCTTACAATCTTAGACCCGCTGGACCGAGCGGT
CAATGTCTCGCGATGCGCTTTCCGCATTGGAGAGATACAATACCTGTTCC
AGCAATGTTTGACCGCGCTGGAGACCCAGGGCATGGAGATGGCGCGCGCC
ATGTTGCACAAACCTGCCGTCGAGGATGATTGGAGCCATGTGGGTAGTGG
CGGCGGTGTCGGCAAGAGAAAGAAGTCGAAGAAGGGGACAGACGGGCAAC
GGCAACCAACGAATTCTACATCGTCCGTCCCGACGCCAAAAAATGACGTG
CTGAGCCTCATCCTTGGGTATTGATTGAATAGAAATATAACAAAAGTGCT
TGATACGAAGATGAAAAGGATACTCTTTTGAAAATCAGAGGACAGATTAG
ATGAATTATGCGTGTGTTTGTCTTGCTAAACGAGAAGTCAGTATGGGAAG
AGGAGATTAAAGCAGCGAAACAACATATTACAGTGTGATATTACGAATAG
ATACAAATCTGCCCGATCTCGTGAGCACGGCGGGTCCTGTCGGAGGAGCC
CGAGCGAGCAACAATTGATAAGAAGAAAGCCACTGCATGCCTATTGT back to topprotein sequence of rna1494 >rna1494-protein ID=rna1494-protein|Name=rna1494|organism=Nannochloropsis gaditana|type=polypeptide|length=175bp
MPIESAAELQASSSLFGKECVDANLAFYEQKKKNPDPQACEAAGKDVLAC
WETLRAKIKAKSEASFQAYAECLEMTGNNLKKCANLHEDLLKSVSEKEAG
AVVRIEEARVRSPLLGDYPDDSTEIIIKEEFRVEKYLFWTRRFRHMQRED
WDQNYPIENCPSQPFLDLGLKSYIE back to topmRNA from alignment at CM002457.1:772333..773130+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1494 ID=rna1494|Name=rna1494|organism=Nannochloropsis gaditana|type=mRNA|length=798bp|location=Sequence derived from alignment at CM002457.1:772333..773130+ (Nannochloropsis gaditana)
ATGCCCATCGAAAGCGCTGCAGAACTTCAGGCATCATCATCACTTTTTGG
GAAAGAATGCGTGGACGCGAACCTTGCTTTCTACgagcaaaagaagaaaa
atccCGACCCACAAGCCTGTGAGGCGGCCGGCAAGGATGTGCTAGCCTGC
TGGGAGACTTTGTAAGTTTCAAATGTCGGGAATTGATTAGGGTTGTagct
ttttcctccatctaCCGTCTCTGCGGGCGTTTCATGTATGTTTTCAACTA
CTTCTCTTTATTTACGCAGGAGAGCAAAAATTAAAGCAAAGTCTGAGGCA
TCTTTTCAAGCCTATGCGGAGTGCCTGGAAATGACGGGCAACAATCTCAA
GAAATGTGCCAATTTGCACGAGGACCTCTTGAAGTCTTTTTACGAATCCA
AGGAGTAAGTGTCTTTTTGACAAATTGGTAGGTCTGTGAGTGAGAAGGAA
GCCGGTGCGGTGGTACGGATAGAGGAGGCTAGAGTGAGGTCCCCTCTTCT
CGGCGACTATCCTGATGGTGCTCTTACAAGATAATTtaccgggggaggaa
gattATATAATTAAGATTCTACAGAAATAATCATTAAAGAGGAGTTTCGA
GTCGAGAAGTATTTATTTTGGACGAGACGATTTAGACATATGCAGCGTGA
AGACTGGGACCAAAACGTGTGAGCAATCATATGGGTTCATGGGTTTTATT
CGTTGCCACATGCATACCGTCAGTGGTCCTAGTATCCAATTGAAAACTGT
CCGTCGCAACCCTTTCTCGATCTAGGCCTCAAGAGTTATATAGAGTGA back to topCoding sequence (CDS) from alignment at CM002457.1:772333..773130+ >rna1494 ID=rna1494|Name=rna1494|organism=Nannochloropsis gaditana|type=CDS|length=2640bp|location=Sequence derived from alignment at CM002457.1:772333..773130+ (Nannochloropsis gaditana)
ATGCCCATCGAAAGCGCTGCAGAACTTCAGGCATCATCATCACTTTTTGG
GAAAGAATGCGTGGACGCGAACCTTGCTTTCTACgagcaaaagaagaaaa
atccCGACCCACAAGCCTGTGAGGCGGCCGGCAAGGATGTGCTAGCCTGC
TGGGAGACTTTGAGAGCAAAAATTAAAGCAAAGTCTGAGGCATCTTTTCA
AGCCTATGCGGAGTGCCTGGAAATGACGGGCAACAATCTCAAGAAATGTG
CCAATTTGCACGAGGACCTCTTGAAGTCTGTGAGTGAGAAGGAAGCCGGT
GCGGTGGTACGGATAGAGGAGGCTAGAGTGAGGTCCCCTCTTCTCGGCGA
CTATCCTGATGATTCTACAGAAATAATCATTAAAGAGGAGTTTCGAGTCG
AGAAGTATTTATTTTGGACGAGACGATTTAGACATATGCAGCGTGAAGAC
TGGGACCAAAACTATCCAATTGAAAACTGTCCGTCGCAACCCTTTCTCGA
TCTAGGCCTCAAGAGTTATATAGAGTGAATGCCCATCGAAAGCGCTGCAG
AACTTCAGGCATCATCATCACTTTTTGGGAAAGAATGCGTGGACGCGAAC
CTTGCTTTCTACgagcaaaagaagaaaaatccCGACCCACAAGCCTGTGA
GGCGGCCGGCAAGGATGTGCTAGCCTGCTGGGAGACTTTGAGAGCAAAAA
TTAAAGCAAAGTCTGAGGCATCTTTTCAAGCCTATGCGGAGTGCCTGGAA
ATGACGGGCAACAATCTCAAGAAATGTGCCAATTTGCACGAGGACCTCTT
GAAGTCTGTGAGTGAGAAGGAAGCCGGTGCGGTGGTACGGATAGAGGAGG
CTAGAGTGAGGTCCCCTCTTCTCGGCGACTATCCTGATGATTCTACAGAA
ATAATCATTAAAGAGGAGTTTCGAGTCGAGAAGTATTTATTTTGGACGAG
ACGATTTAGACATATGCAGCGTGAAGACTGGGACCAAAACTATCCAATTG
AAAACTGTCCGTCGCAACCCTTTCTCGATCTAGGCCTCAAGAGTTATATA
GAGTGAATGCCCATCGAAAGCGCTGCAGAACTTCAGGCATCATCATCACT
TTTTGGGAAAGAATGCGTGGACGCGAACCTTGCTTTCTACgagcaaaaga
agaaaaatccCGACCCACAAGCCTGTGAGGCGGCCGGCAAGGATGTGCTA
GCCTGCTGGGAGACTTTGAGAGCAAAAATTAAAGCAAAGTCTGAGGCATC
TTTTCAAGCCTATGCGGAGTGCCTGGAAATGACGGGCAACAATCTCAAGA
AATGTGCCAATTTGCACGAGGACCTCTTGAAGTCTGTGAGTGAGAAGGAA
GCCGGTGCGGTGGTACGGATAGAGGAGGCTAGAGTGAGGTCCCCTCTTCT
CGGCGACTATCCTGATGATTCTACAGAAATAATCATTAAAGAGGAGTTTC
GAGTCGAGAAGTATTTATTTTGGACGAGACGATTTAGACATATGCAGCGT
GAAGACTGGGACCAAAACTATCCAATTGAAAACTGTCCGTCGCAACCCTT
TCTCGATCTAGGCCTCAAGAGTTATATAGAGTGAATGCCCATCGAAAGCG
CTGCAGAACTTCAGGCATCATCATCACTTTTTGGGAAAGAATGCGTGGAC
GCGAACCTTGCTTTCTACgagcaaaagaagaaaaatccCGACCCACAAGC
CTGTGAGGCGGCCGGCAAGGATGTGCTAGCCTGCTGGGAGACTTTGAGAG
CAAAAATTAAAGCAAAGTCTGAGGCATCTTTTCAAGCCTATGCGGAGTGC
CTGGAAATGACGGGCAACAATCTCAAGAAATGTGCCAATTTGCACGAGGA
CCTCTTGAAGTCTGTGAGTGAGAAGGAAGCCGGTGCGGTGGTACGGATAG
AGGAGGCTAGAGTGAGGTCCCCTCTTCTCGGCGACTATCCTGATGATTCT
ACAGAAATAATCATTAAAGAGGAGTTTCGAGTCGAGAAGTATTTATTTTG
GACGAGACGATTTAGACATATGCAGCGTGAAGACTGGGACCAAAACTATC
CAATTGAAAACTGTCCGTCGCAACCCTTTCTCGATCTAGGCCTCAAGAGT
TATATAGAGTGAATGCCCATCGAAAGCGCTGCAGAACTTCAGGCATCATC
ATCACTTTTTGGGAAAGAATGCGTGGACGCGAACCTTGCTTTCTACgagc
aaaagaagaaaaatccCGACCCACAAGCCTGTGAGGCGGCCGGCAAGGAT
GTGCTAGCCTGCTGGGAGACTTTGAGAGCAAAAATTAAAGCAAAGTCTGA
GGCATCTTTTCAAGCCTATGCGGAGTGCCTGGAAATGACGGGCAACAATC
TCAAGAAATGTGCCAATTTGCACGAGGACCTCTTGAAGTCTGTGAGTGAG
AAGGAAGCCGGTGCGGTGGTACGGATAGAGGAGGCTAGAGTGAGGTCCCC
TCTTCTCGGCGACTATCCTGATGATTCTACAGAAATAATCATTAAAGAGG
AGTTTCGAGTCGAGAAGTATTTATTTTGGACGAGACGATTTAGACATATG
CAGCGTGAAGACTGGGACCAAAACTATCCAATTGAAAACTGTCCGTCGCA
ACCCTTTCTCGATCTAGGCCTCAAGAGTTATATAGAGTGA back to top
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