rna1491, rna1491 (mRNA) Nannochloropsis gaditana

Overview
Namerna1491
Unique Namerna1491
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length797
Alignment locationCM002457.1:761588..762735 +

Link to JBrowse

Properties
Property NameValue
Producttransport protein sec61 subunit gamma
Orig transcript idgnl|cribi|Naga_100007g90.6435.mrna
Orig protein idgnl|cribi|Naga_100007g90.6435
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:761588..762735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g90gene1439Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1491rna1491-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29108.1cds1488Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1491 ID=rna1491|Name=rna1491|organism=Nannochloropsis gaditana|type=mRNA|length=797bp
GTGTCGTCTCAAAAGTGAGGCTTTCTCACCAGTGTAGCGCCCTCATTCAA
ATCCTACGATGTGCAAAATTTACAGGAATCGCAAGTCCTCGACCTTCATA
TTGCTGTCACCGTCAAGATGAGTACTGAGCGCACCTATATAATGATCAAG
CCTGATGGTGTCCAACGCGGTCTTGTTGGGGAAATTATTGGACGTTTCGA
GCGCAAAGGGTTCAAACTCGTTGCCCTGAAGTCAATGAACGCCTCAAAGG
ACCTCTTGAACGAGCACTATCAGGATCTCGCGGATAAACCTTTTTTCGGT
GGCCTCGTGGCGTACATGAGCTCTGGCCCTGTTATTGCTATGGTGTGGGA
GGGTCTAAATGCTGTTAAGGAGGGACGCAAGATGTTAGGTGCCACCAAAC
CGGCTGATAGTGCACCTGGCACGATTCGTGGGGACTTCGCCTTAGATGTA
AGTTCGTAATTAATAACAGATTCAATTTTTGTCAAAAAGTATCTCTCCAT
AAACGTGCAACATGCGGATCGAAAACACAGGTCGGCCGCAACATCTGTCA
CGGTTCAGATTCCGTGGAATCAGCTCAGCGTGAGATCAGCCTTTGGTTTG
GAGAAGGTTTGACAGAGTGGAACGCCAACAATTATGCGTGGGTGTATGAG
AAGTGAGAGCTTCCATAAATTTCTAAGGGATTCACGATCCGGGGCGGATC
AACGCCAAGGGGACAAAACAAGAGGTGATTTTTTGAGGGACTTGTTAGCA
GTCTTTTTCAACAAGGATGAAGAAATTTTCAGTGAACGCAATGCTGT
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protein sequence of rna1491

>rna1491-protein ID=rna1491-protein|Name=rna1491|organism=Nannochloropsis gaditana|type=polypeptide|length=93bp
MLIFVIAHRDREHKAGHLANFVIMSDVNAHIIQPLKKFAKDSSHLVKKCT
KPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGGI
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mRNA from alignment at CM002457.1:761588..762735+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1491 ID=rna1491|Name=rna1491|organism=Nannochloropsis gaditana|type=mRNA|length=1148bp|location=Sequence derived from alignment at CM002457.1:761588..762735+ (Nannochloropsis gaditana)
ATGCCTGCACCTGTAGGGGTCTTAGGCTTGAGCACAAGGACGTGCACGGA
AGCCCTCGAGTGCCTATTCAGATCCTCCATGCAACCATCTGCGTACTGCT
TTGGTTGTGACGGCCGTTCCAGTCGGAAGCTTGATTTGTGAGGTCCGATT
TGTGGGCTCTTTGAAAAAGACACCTTCCGATGGACGCCAAACGGGACAAG
GGCAAGTGCAGTACAGCCATGTTCTTGCCAGCATAGTGCAGTCAGGACTA
TCACTGTATTTCGGAAGTTCCGAGTGTCGGACGTTCAGCGCACTCTCGAC
ATCACATTGACAAATTACTCCATAATGCTCATCTTTGTCATCGCACATAG
AGACAGAGAACACAAAGCAGGGCATTTGGCAAACTTTGTCATCATGTCTG
ACGTTAATGCGCACATCATTCAGCCTCTGAAGAAATTTGCCAAAGACTCG
AGTCACTTGGTGAAGAAGTGCACGAAGCCGGACCGGAAAGGTGCGTATGA
CTTCAGTGGCTGCCCCTTTTTTTCGCGACTcaatcttttttttcttattC
CTATGCTTCAGAGTTTGCCCGGATAGCTTACGCCACTAGCGTTGGATTTC
TGATCATGGGCTTCATCGGCTTCTTCGTCAAGCTTATCCACATCCCGATC
AACAACATCCTTCTGGGCGGCATCTAGAAAAACCGGCCCGCCGCTCCTCA
TACATGCGTAGGAAATCCGATGGGTGAGAAGAAGACATGCCATTGTCTCC
AAGGGCCATACATGCGCCTTGGAAAGTGTGCGGTGAGAATCGTTTGAACA
AACGAGAAGTAAACGGGTATGAGGCTCGGAGAATGGAATGAAGTAACAAA
TATACCAGTTAAGCTTTGAAAGTTTTGATCGCAAACAAACTGTTGCTTGG
GGAACACAGACTGGTGCCCTTCTTTCAGAGCATCCGGAAGGGACGCGCAG
ACAACCCAGAAGTTTTGCTCGTGACTCGGTATTCTAACGTTTGTGCTTTT
TAGATAGCTTTCTCGAAGCCTCCTGGACACACCATGCTCTACTTTTGTAT
CGACAGTGTGCAGAAGAAAATCCTGTGTACAATCCATTCAGTCCTCACGC
TCACATTTTGGCCGAGGATGATactgtctctcctcctcccgacaactg
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Coding sequence (CDS) from alignment at CM002457.1:761588..762735+

>rna1491 ID=rna1491|Name=rna1491|organism=Nannochloropsis gaditana|type=CDS|length=564bp|location=Sequence derived from alignment at CM002457.1:761588..762735+ (Nannochloropsis gaditana)
ATGCTCATCTTTGTCATCGCACATAGAGACAGAGAACACAAAGCAGGGCA
TTTGGCAAACTTTGTCATCATGTCTGACGTTAATGCGCACATCATTCAGC
CTCTGAAGAAATTTGCCAAAGACTCGAGTCACTTGGTGAAGAAGTGCACG
AAGCCGGACCGGAAAGAGTTTGCCCGGATAGCTTACGCCACTAGCGTTGG
ATTTCTGATCATGGGCTTCATCGGCTTCTTCGTCAAGCTTATCCACATCC
CGATCAACAACATCCTTCTGGGCGGCATCTAGATGCTCATCTTTGTCATC
GCACATAGAGACAGAGAACACAAAGCAGGGCATTTGGCAAACTTTGTCAT
CATGTCTGACGTTAATGCGCACATCATTCAGCCTCTGAAGAAATTTGCCA
AAGACTCGAGTCACTTGGTGAAGAAGTGCACGAAGCCGGACCGGAAAGAG
TTTGCCCGGATAGCTTACGCCACTAGCGTTGGATTTCTGATCATGGGCTT
CATCGGCTTCTTCGTCAAGCTTATCCACATCCCGATCAACAACATCCTTC
TGGGCGGCATCTAG
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Synonyms
Publications