EWM29108.1, cds1488 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29108.1 vs. NCBI_GenBank
Match: gi|585111628|gb|EWM29108.1| (transport protein sec61 subunit gamma [Nannochloropsis gaditana]) HSP 1 Score: 187.963 bits (476), Expect = 2.097e-60 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
Query: 1 MLIFVIAHRDREHKAGHLANFVIMSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGGI 93
MLIFVIAHRDREHKAGHLANFVIMSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGGI
Sbjct: 1 MLIFVIAHRDREHKAGHLANFVIMSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGGI 93
BLAST of EWM29108.1 vs. NCBI_GenBank
Match: gi|673037092|ref|XP_008872507.1| (protein transporter Sec61 subunit gamma [Aphanomyces invadans] >gi|698813308|ref|XP_009839683.1| protein transporter Sec61 subunit gamma [Aphanomyces astaci] >gi|574105496|gb|ETV71020.1| protein transporter Sec61 subunit gamma [Aphanomyces astaci] >gi|574472073|gb|ETV99079.1| protein transporter Sec61 subunit gamma [Aphanomyces invadans]) HSP 1 Score: 123.635 bits (309), Expect = 3.102e-35 Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = 0
Query: 24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 92
MSDVNA +I+PLK+FAK+S HLVKKCTKPDRKEFARIA AT VGFL+MGFIGFFVKL+HIPINNIL+GG
Sbjct: 1 MSDVNALVIEPLKQFAKNSVHLVKKCTKPDRKEFARIAGATGVGFLLMGFIGFFVKLVHIPINNILVGG 69
BLAST of EWM29108.1 vs. NCBI_GenBank
Match: gi|1173960361|gb|OQS06499.1| (Type II (General) Secretory Pathway (IISP) Family [Thraustotheca clavata]) HSP 1 Score: 122.865 bits (307), Expect = 7.023e-35 Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 0
Query: 24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 92
MSDVNA +I+PLK FAK+S HLVKKCTKPDRKEF RIA ATSVGFL+MGFIGFFVKL+HIPINNIL+GG
Sbjct: 1 MSDVNAIVIEPLKTFAKNSVHLVKKCTKPDRKEFTRIAGATSVGFLMMGFIGFFVKLVHIPINNILVGG 69
BLAST of EWM29108.1 vs. NCBI_GenBank
Match: gi|1173953723|gb|OQS01245.1| (Type II (General) Secretory Pathway (IISP) Family [Achlya hypogyna]) HSP 1 Score: 122.479 bits (306), Expect = 9.193e-35 Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 0
Query: 24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 92
MSDVNA +I+PLK FAK+S HLVKKCTKPDRKEF RIA ATSVGFL+MGFIGFFVKL+HIPINNIL+GG
Sbjct: 1 MSDVNAIVIEPLKAFAKNSVHLVKKCTKPDRKEFTRIAGATSVGFLMMGFIGFFVKLVHIPINNILVGG 69
BLAST of EWM29108.1 vs. NCBI_GenBank
Match: gi|669155128|ref|XP_008613126.1| (protein translocase SEC61 complex gamma subunit [Saprolegnia diclina VS20] >gi|813177687|ref|XP_012205313.1| translocase SEC61 complex gamma subunit [Saprolegnia parasitica CBS 223.65] >gi|813225776|ref|XP_012211965.1| translocase SEC61 complex gamma subunit [Saprolegnia parasitica CBS 223.65] >gi|530735244|gb|EQC33486.1| protein translocase SEC61 complex gamma subunit [Saprolegnia diclina VS20] >gi|641521900|gb|KDO17329.1| translocase SEC61 complex gamma subunit [Saprolegnia parasitica CBS 223.65] >gi|641529840|gb|KDO23992.1| translocase SEC61 complex gamma subunit [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 121.324 bits (303), Expect = 2.481e-34 Identity = 57/69 (82.61%), Postives = 64/69 (92.75%), Query Frame = 0
Query: 24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 92
MSDVNA +I+PLK FAK+S HLVKKCTKPDRKEF RIA ATS+GFL+MGFIGFFVKL+HIPINNIL+GG
Sbjct: 1 MSDVNAIVIEPLKAFAKNSIHLVKKCTKPDRKEFTRIAGATSIGFLMMGFIGFFVKLVHIPINNILVGG 69
BLAST of EWM29108.1 vs. NCBI_GenBank
Match: gi|299117080|emb|CBN73851.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 119.013 bits (297), Expect = 1.711e-33 Identity = 53/69 (76.81%), Postives = 63/69 (91.30%), Query Frame = 0
Query: 24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 92
MSDVN +IQPL+KF+KDS HL+KKCTKPDRKEF ++A AT+VGFL+MGFIGFFVKL+HIPINNIL+ G
Sbjct: 1 MSDVNELLIQPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLVHIPINNILMAG 69
BLAST of EWM29108.1 vs. NCBI_GenBank
Match: gi|953486714|emb|CEG48776.1| (protein translocase sec61 complex gamma archaeal and eukaryotic [Plasmopara halstedii]) HSP 1 Score: 117.087 bits (292), Expect = 1.142e-32 Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 0
Query: 24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 92
MSD+NA ++QPL +F K+S HL+KKC KPDRKEFARIA ATSVGFL+MGFIGFFVKL+HIPINNIL+GG
Sbjct: 1 MSDINALVLQPLNQFFKNSLHLIKKCNKPDRKEFARIAGATSVGFLMMGFIGFFVKLVHIPINNILVGG 69
BLAST of EWM29108.1 vs. NCBI_GenBank
Match: gi|301094797|ref|XP_002896502.1| (Type II (General) Secretory Pathway (IISP) Family [Phytophthora infestans T30-4] >gi|675173299|ref|XP_008895534.1| protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica INRA-310] >gi|262108998|gb|EEY67050.1| Type II (General) Secretory Pathway (IISP) Family [Phytophthora infestans T30-4] >gi|566015422|gb|ETI38333.1| protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica P1569] >gi|567952864|gb|ETK78527.1| protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica] >gi|567981515|gb|ETL31953.1| protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica] >gi|568011005|gb|ETL85183.1| protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica] >gi|568040918|gb|ETM38347.1| protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica] >gi|568105067|gb|ETN19712.1| protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica INRA-310] >gi|570319154|gb|ETO67102.1| protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica P1976] >gi|570942957|gb|ETP08214.1| protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica CJ01A1] >gi|570973723|gb|ETP36266.1| protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica P10297] >gi|970651833|gb|KUF90595.1| transport protein Sec61 subunit gamma protein [Phytophthora nicotianae] >gi|970661547|gb|KUF99008.1| UPF0554 protein C2orf43 [Phytophthora nicotianae]) HSP 1 Score: 117.087 bits (292), Expect = 1.206e-32 Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 0
Query: 24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 92
MSDVNA + QPL +F K+S HL+KKC KPDRKEFARIA ATSVGFL+MGFIGFFVKL+HIPINNIL+GG
Sbjct: 1 MSDVNALVFQPLNQFFKNSLHLIKKCNKPDRKEFARIAGATSVGFLMMGFIGFFVKLVHIPINNILVGG 69
BLAST of EWM29108.1 vs. NCBI_GenBank
Match: gi|676386591|ref|XP_009036574.1| (hypothetical protein AURANDRAFT_25829 [Aureococcus anophagefferens] >gi|323452698|gb|EGB08571.1| hypothetical protein AURANDRAFT_25829 [Aureococcus anophagefferens]) HSP 1 Score: 117.087 bits (292), Expect = 1.414e-32 Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 0
Query: 24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMG----FIGFFVKLIHIPINNILL 90
MSDVNA I+QPLK+F KDS HLVKKCTKPDRKEF RIA+AT VGFLIMG F+GFFVKLIHIPINNIL+
Sbjct: 1 MSDVNAVIVQPLKQFVKDSVHLVKKCTKPDRKEFTRIAWATGVGFLIMGAPPRFVGFFVKLIHIPINNILM 71
BLAST of EWM29108.1 vs. NCBI_GenBank
Match: gi|325180257|emb|CCA14660.1| (Type II (General) Secretory Pathway (IISP) Family p [Albugo laibachii Nc14]) HSP 1 Score: 111.694 bits (278), Expect = 1.906e-30 Identity = 51/69 (73.91%), Postives = 61/69 (88.41%), Query Frame = 0
Query: 24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 92
MSD+N+ ++QPL++F ++S HL KKCTKPDRKEF RIA AT VGFL+MGF GFFVKLIHIPINNIL+GG
Sbjct: 1 MSDINSLVVQPLREFFQNSLHLFKKCTKPDRKEFYRIAGATMVGFLLMGFTGFFVKLIHIPINNILVGG 69 The following BLAST results are available for this feature:
BLAST of EWM29108.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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