EWM29108.1, cds1488 (CDS) Nannochloropsis gaditana

Overview
NameEWM29108.1
Unique Namecds1488
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:761912..762077 +
Alignment locationCM002457.1:762149..762264 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29108.1
Producttransport protein sec61 subunit gamma
Orig transcript idgnl|cribi|Naga_100007g90.6435.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:761912..762077 +
CM002457.1supercontigCM002457.1:762149..762264 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0015450P-P-bond-hydrolysis-driven protein transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006605protein targeting
GO:0006886intracellular protein transport
GO:0015031protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR022943SecE
IPR023391Prot_translocase_SecE_dom
IPR001901Translocase_SecE/Sec61-g
IPR008158Translocase_Sec61-g
Homology
BLAST of EWM29108.1 vs. NCBI_GenBank
Match: gi|585111628|gb|EWM29108.1| (transport protein sec61 subunit gamma [Nannochloropsis gaditana])

HSP 1 Score: 187.963 bits (476), Expect = 2.097e-60
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
Query:    1 MLIFVIAHRDREHKAGHLANFVIMSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGGI 93
            MLIFVIAHRDREHKAGHLANFVIMSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGGI
Sbjct:    1 MLIFVIAHRDREHKAGHLANFVIMSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGGI 93          
BLAST of EWM29108.1 vs. NCBI_GenBank
Match: gi|673037092|ref|XP_008872507.1| (protein transporter Sec61 subunit gamma [Aphanomyces invadans] >gi|698813308|ref|XP_009839683.1| protein transporter Sec61 subunit gamma [Aphanomyces astaci] >gi|574105496|gb|ETV71020.1| protein transporter Sec61 subunit gamma [Aphanomyces astaci] >gi|574472073|gb|ETV99079.1| protein transporter Sec61 subunit gamma [Aphanomyces invadans])

HSP 1 Score: 123.635 bits (309), Expect = 3.102e-35
Identity = 58/69 (84.06%), Postives = 65/69 (94.20%), Query Frame = 0
Query:   24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 92
            MSDVNA +I+PLK+FAK+S HLVKKCTKPDRKEFARIA AT VGFL+MGFIGFFVKL+HIPINNIL+GG
Sbjct:    1 MSDVNALVIEPLKQFAKNSVHLVKKCTKPDRKEFARIAGATGVGFLLMGFIGFFVKLVHIPINNILVGG 69          
BLAST of EWM29108.1 vs. NCBI_GenBank
Match: gi|1173960361|gb|OQS06499.1| (Type II (General) Secretory Pathway (IISP) Family [Thraustotheca clavata])

HSP 1 Score: 122.865 bits (307), Expect = 7.023e-35
Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 0
Query:   24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 92
            MSDVNA +I+PLK FAK+S HLVKKCTKPDRKEF RIA ATSVGFL+MGFIGFFVKL+HIPINNIL+GG
Sbjct:    1 MSDVNAIVIEPLKTFAKNSVHLVKKCTKPDRKEFTRIAGATSVGFLMMGFIGFFVKLVHIPINNILVGG 69          
BLAST of EWM29108.1 vs. NCBI_GenBank
Match: gi|1173953723|gb|OQS01245.1| (Type II (General) Secretory Pathway (IISP) Family [Achlya hypogyna])

HSP 1 Score: 122.479 bits (306), Expect = 9.193e-35
Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 0
Query:   24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 92
            MSDVNA +I+PLK FAK+S HLVKKCTKPDRKEF RIA ATSVGFL+MGFIGFFVKL+HIPINNIL+GG
Sbjct:    1 MSDVNAIVIEPLKAFAKNSVHLVKKCTKPDRKEFTRIAGATSVGFLMMGFIGFFVKLVHIPINNILVGG 69          
BLAST of EWM29108.1 vs. NCBI_GenBank
Match: gi|669155128|ref|XP_008613126.1| (protein translocase SEC61 complex gamma subunit [Saprolegnia diclina VS20] >gi|813177687|ref|XP_012205313.1| translocase SEC61 complex gamma subunit [Saprolegnia parasitica CBS 223.65] >gi|813225776|ref|XP_012211965.1| translocase SEC61 complex gamma subunit [Saprolegnia parasitica CBS 223.65] >gi|530735244|gb|EQC33486.1| protein translocase SEC61 complex gamma subunit [Saprolegnia diclina VS20] >gi|641521900|gb|KDO17329.1| translocase SEC61 complex gamma subunit [Saprolegnia parasitica CBS 223.65] >gi|641529840|gb|KDO23992.1| translocase SEC61 complex gamma subunit [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 121.324 bits (303), Expect = 2.481e-34
Identity = 57/69 (82.61%), Postives = 64/69 (92.75%), Query Frame = 0
Query:   24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 92
            MSDVNA +I+PLK FAK+S HLVKKCTKPDRKEF RIA ATS+GFL+MGFIGFFVKL+HIPINNIL+GG
Sbjct:    1 MSDVNAIVIEPLKAFAKNSIHLVKKCTKPDRKEFTRIAGATSIGFLMMGFIGFFVKLVHIPINNILVGG 69          
BLAST of EWM29108.1 vs. NCBI_GenBank
Match: gi|299117080|emb|CBN73851.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 119.013 bits (297), Expect = 1.711e-33
Identity = 53/69 (76.81%), Postives = 63/69 (91.30%), Query Frame = 0
Query:   24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 92
            MSDVN  +IQPL+KF+KDS HL+KKCTKPDRKEF ++A AT+VGFL+MGFIGFFVKL+HIPINNIL+ G
Sbjct:    1 MSDVNELLIQPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLVHIPINNILMAG 69          
BLAST of EWM29108.1 vs. NCBI_GenBank
Match: gi|953486714|emb|CEG48776.1| (protein translocase sec61 complex gamma archaeal and eukaryotic [Plasmopara halstedii])

HSP 1 Score: 117.087 bits (292), Expect = 1.142e-32
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 0
Query:   24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 92
            MSD+NA ++QPL +F K+S HL+KKC KPDRKEFARIA ATSVGFL+MGFIGFFVKL+HIPINNIL+GG
Sbjct:    1 MSDINALVLQPLNQFFKNSLHLIKKCNKPDRKEFARIAGATSVGFLMMGFIGFFVKLVHIPINNILVGG 69          
BLAST of EWM29108.1 vs. NCBI_GenBank
Match: gi|301094797|ref|XP_002896502.1| (Type II (General) Secretory Pathway (IISP) Family [Phytophthora infestans T30-4] >gi|675173299|ref|XP_008895534.1| protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica INRA-310] >gi|262108998|gb|EEY67050.1| Type II (General) Secretory Pathway (IISP) Family [Phytophthora infestans T30-4] >gi|566015422|gb|ETI38333.1| protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica P1569] >gi|567952864|gb|ETK78527.1| protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica] >gi|567981515|gb|ETL31953.1| protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica] >gi|568011005|gb|ETL85183.1| protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica] >gi|568040918|gb|ETM38347.1| protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica] >gi|568105067|gb|ETN19712.1| protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica INRA-310] >gi|570319154|gb|ETO67102.1| protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica P1976] >gi|570942957|gb|ETP08214.1| protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica CJ01A1] >gi|570973723|gb|ETP36266.1| protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic [Phytophthora parasitica P10297] >gi|970651833|gb|KUF90595.1| transport protein Sec61 subunit gamma protein [Phytophthora nicotianae] >gi|970661547|gb|KUF99008.1| UPF0554 protein C2orf43 [Phytophthora nicotianae])

HSP 1 Score: 117.087 bits (292), Expect = 1.206e-32
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 0
Query:   24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 92
            MSDVNA + QPL +F K+S HL+KKC KPDRKEFARIA ATSVGFL+MGFIGFFVKL+HIPINNIL+GG
Sbjct:    1 MSDVNALVFQPLNQFFKNSLHLIKKCNKPDRKEFARIAGATSVGFLMMGFIGFFVKLVHIPINNILVGG 69          
BLAST of EWM29108.1 vs. NCBI_GenBank
Match: gi|676386591|ref|XP_009036574.1| (hypothetical protein AURANDRAFT_25829 [Aureococcus anophagefferens] >gi|323452698|gb|EGB08571.1| hypothetical protein AURANDRAFT_25829 [Aureococcus anophagefferens])

HSP 1 Score: 117.087 bits (292), Expect = 1.414e-32
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 0
Query:   24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMG----FIGFFVKLIHIPINNILL 90
            MSDVNA I+QPLK+F KDS HLVKKCTKPDRKEF RIA+AT VGFLIMG    F+GFFVKLIHIPINNIL+
Sbjct:    1 MSDVNAVIVQPLKQFVKDSVHLVKKCTKPDRKEFTRIAWATGVGFLIMGAPPRFVGFFVKLIHIPINNILM 71          
BLAST of EWM29108.1 vs. NCBI_GenBank
Match: gi|325180257|emb|CCA14660.1| (Type II (General) Secretory Pathway (IISP) Family p [Albugo laibachii Nc14])

HSP 1 Score: 111.694 bits (278), Expect = 1.906e-30
Identity = 51/69 (73.91%), Postives = 61/69 (88.41%), Query Frame = 0
Query:   24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLGG 92
            MSD+N+ ++QPL++F ++S HL KKCTKPDRKEF RIA AT VGFL+MGF GFFVKLIHIPINNIL+GG
Sbjct:    1 MSDINSLVVQPLREFFQNSLHLFKKCTKPDRKEFYRIAGATMVGFLLMGFTGFFVKLIHIPINNILVGG 69          
The following BLAST results are available for this feature:
BLAST of EWM29108.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111628|gb|EWM29108.1|2.097e-60100.00transport protein sec61 subunit gamma [Nannochloro... [more]
gi|673037092|ref|XP_008872507.1|3.102e-3584.06protein transporter Sec61 subunit gamma [Aphanomyc... [more]
gi|1173960361|gb|OQS06499.1|7.023e-3584.06Type II (General) Secretory Pathway (IISP) Family ... [more]
gi|1173953723|gb|OQS01245.1|9.193e-3584.06Type II (General) Secretory Pathway (IISP) Family ... [more]
gi|669155128|ref|XP_008613126.1|2.481e-3482.61protein translocase SEC61 complex gamma subunit [S... [more]
gi|299117080|emb|CBN73851.1|1.711e-3376.81conserved unknown protein [Ectocarpus siliculosus][more]
gi|953486714|emb|CEG48776.1|1.142e-3278.26protein translocase sec61 complex gamma archaeal a... [more]
gi|301094797|ref|XP_002896502.1|1.206e-3279.71Type II (General) Secretory Pathway (IISP) Family ... [more]
gi|676386591|ref|XP_009036574.1|1.414e-3280.28hypothetical protein AURANDRAFT_25829 [Aureococcus... [more]
gi|325180257|emb|CCA14660.1|1.906e-3073.91Type II (General) Secretory Pathway (IISP) Family ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1491rna1491Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications