rna1490, rna1490 (mRNA) Nannochloropsis gaditana

Overview
Namerna1490
Unique Namerna1490
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1889
Alignment locationCM002457.1:760316..761450 -

Link to JBrowse

Properties
Property NameValue
Productnucleoside diphosphate kinase a
Orig transcript idgnl|cribi|Naga_100007g91.6540.mrna
Orig protein idgnl|cribi|Naga_100007g91.6540
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:760316..761450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g91gene1438Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1490rna1490-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29213.1cds1487Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1490 ID=rna1490|Name=rna1490|organism=Nannochloropsis gaditana|type=mRNA|length=1889bp
CATAAATGCTGTTCTGAACATTTTTCTCCCAACTTTCTCCTCCTTGTCCT
CGCCTCATTTATCTGACGCTCTGTCCAAGCGGATCGGAACGGAGGGGGCT
GTCAAGTCTTCGGAGCGCAGCCTGCTTGGTTTACGGGACGGGAAAGGCTC
CTCCGCGTATCGAAAACACGCGAAGGTATGCGCGGATCATTTTACCGTCG
ATGGAGGTGACCTGTCGGCGACGTACACAGCATGTTGCTGTCGCAACTCT
TTCTTTCATCTCAATCTCGTCTCGTAGCTTCCTGACCCTTCCTACCTCCC
CTCGCTCCAACACAGGAAACAGCTCACCCGTGTCCTTGTCTCACCACTTG
CCCTTTGAGCCTCACAGTACATGTCATGAAGGCTGTTCTAGGCTGCGTCA
GTTCTTTGTACGTAACGGCGGCCTTTTTGGGTCCTCAATACCGACAAGTA
CCGTCCTTCTCTAACGGACTCAACACCTGGATGAGAGGTAGACGGCAGCT
GATCGTCTCGGCTGCAGACGGCACCAGCGGATCAACGTCTCTCGAACGAG
AGACTTTACGCTTTTTAAACCCTGACATAGTTGAAAACTTGGCGAATCAG
TATGGCACTCCAACCTATATCTACGACATGGCAACCCTCAAAGCGAGTGC
GAAAAGTGCTCTCTCCTTCCCCAATGCCTTCGGCTTGACAGTTCGATACG
CAATGAAAGCAAGCCCTAATGCAGCTATTCTTAAGCTTTTTAATAGCTTG
GGCCTGCATATAGACGCTTCTTCAGGGTATGAAATACAGCGGGCAATGCG
TGCTGGTGTGCCCGCCTCGCACATCAGCTTGTCTTCGCAGGAATTGCCGT
CCGACTTTGACAGCTTCGTTGACCTAGGGGTCCATATCAATGCTTGCTCC
ATCTCCCAGCTTCAGCGATTTGGAGAGAGGTGTTCTGGTGGGAAAATTGG
GCTGCGGTTCAACCCTGGGGTGGGTTCGGGCGGGACCGGCAAGACAAACG
TAGGGGGCCCTTCTTCCGCCTTTGGCATTTGGCACGAGCTGCTGCCAGAG
GTCAAGCGAGTCGTGGCCGAGCACAAGCTCCAGGTTGTGCGCGTCCACAC
GCACATTGGGTCGGGCTCAGATCCTGCAGTGTGGCAAAACGTGGCCGCCT
TGTCGCTGGACTTAGTCCGAGAGTTCCCGCAGGTGGAGACTCTTAACCTG
GGCGGGGGATACAAGGTAGGCCGGATGCGGCAAGAACAGTCCACCGACCT
GGCTAAGATTGGTGCACCAGTAAAAGAAAAGTTCGAGGACTTCGCCCTGG
AGACAGGGCGAAAGCTGCACCTGGAGATTGAGCCTGGGACATTCTTGGTT
GCGAACGCCGGGGCCCTTGTCTGTCGGGTGCAAGACAAGACAAGCACCAG
CGCCCACACTTTTTTAAAATTGGATGCTGGCATGACTGAGGTCTTACGCC
CTTCCTTGTACGGGGCGCAGCATCCCTTAGTCGTCATCCCCAAGGACCGC
ACTCGTGCCGACCGAGCAGCATATTACGTGGTGGTAGGTCACTGCTGTGA
GTCGGGCGACCTTCTCACTCCTGCACCTGGCGAGGCCGACACAGTATCGG
AGCGGGAGCTAACTTCCGCAGAAATCGGAGACTTGATGGTGGTGGAAGGC
TCAGGCGCATATTGTGCAGGGATGAGCACCAAGAACTACAATTCTTTTCC
AGAAGCTCCAGAGGTCATGCTCGCCCCAGACGGCGCCCTCTACCTTATCC
GCAGACGGCAGACTCTGGAGCAAGCACTGCAGAACGAGTTGGACTTGCCG
ACCAGCGCACTAGCTTAATCAGACATGAAATCGGAAGATACTTTTTAGAA
CACGATGAAGGAAAGTACGAGACACCTTATGCCAGATGA
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protein sequence of rna1490

>rna1490-protein ID=rna1490-protein|Name=rna1490|organism=Nannochloropsis gaditana|type=polypeptide|length=113bp
MSTERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEH
YQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAP
GTIRGDFALDVSS
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mRNA from alignment at CM002457.1:760316..761450-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1490 ID=rna1490|Name=rna1490|organism=Nannochloropsis gaditana|type=mRNA|length=1135bp|location=Sequence derived from alignment at CM002457.1:760316..761450- (Nannochloropsis gaditana)
GTGTCGTCTCAAAAGTGAGGCTTTCTCACCAGTGTAGCGCCCTCATTCAA
ATCCTACGATGTGCAAAATTTACAGGAATCGCAAGTCCTCGACCTTCATA
TTGCTGTCACCGTCAAGATGAGTACTGAGCGCACCTGTAAGTGGCAGAAA
GTGGAGTACAGCATTTTTGTGCTTTGTTTTTTGAAGAAATGGAAAGTATT
ATGTTCACTATTCAATGGATTGATGGAAGTCCTTACAAGTTTGTATTGCC
CTTCGGCACTATAAGTCATATTTTTCACTCGGTGTGAAGATGTCTCGCTA
CTTACGAGATGTGCAGACCGTTGTCTTACGTGGCGTCACACGTCCCTAAA
TGACTTCAGATATAATGATCAAGCCTGATGGTGTCCAACGCGGTCTTGTT
GGGGAAATTATTGGACGTTTCGAGCGCAAAGGGTTCAAACTCGTTGCCCT
GAAGTCAATGAACGCCTCAAAGGACCTCTTGAACGAGCACTATCAGGATC
TCGCGGATAAACCTTTTTTCGGTGGCCTCGTGGCGTACATGAGCTCTGGC
CCTGTTATTGCTATGGTGTGGGAGGGTCTAAATGCTGTTAAGGAGGGACG
CAAGGTAATGATGCCTTCGATTTCCTGAATCTATCTCTTCCAAACTCGAG
TCACTACTTGAAAACCAAGCTTTAGGGTACAAATGCGCTAATCTTTCATT
TCACCTCTTCTTCTCGTAGATGTTAGGTGCCACCAAACCGGCTGATAGTG
CACCTGGCACGATTCGTGGGGACTTCGCCTTAGATGTAAGTTCGTAATTA
ATAACAGATTCAATTTTTGTCAAAAAGTATCTCTCCATAAACGTGCAACA
TGCGGATCGAAAACACAGGTCGGCCGCAACATCTGTCACGGTTCAGATTC
CGTGGAATCAGCTCAGCGTGAGATCAGCCTTTGGTTTGGAGAAGGTTTGA
CAGAGTGGAACGCCAACAATTATGCGTGGGTGTATGAGAAGTGAGAGCTT
CCATAAATTTCTAAGGGATTCACGATCCGGGGCGGATCAACGCCAAGGGG
ACAAAACAAGAGGTGATTTTTTGAGGGACTTGTTAGCAGTCTTTTTCAAC
AAGGATGAAGAAATTTTCAGTGAACGCAATGCTGT
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Coding sequence (CDS) from alignment at CM002457.1:760316..761450-

>rna1490 ID=rna1490|Name=rna1490|organism=Nannochloropsis gaditana|type=CDS|length=1026bp|location=Sequence derived from alignment at CM002457.1:760316..761450- (Nannochloropsis gaditana)
ATGTTAGGTGCCACCAAACCGGCTGATAGTGCACCTGGCACGATTCGTGG
GGACTTCGCCTTAGATGTAAGTTCGTAAATATAATGATCAAGCCTGATGG
TGTCCAACGCGGTCTTGTTGGGGAAATTATTGGACGTTTCGAGCGCAAAG
GGTTCAAACTCGTTGCCCTGAAGTCAATGAACGCCTCAAAGGACCTCTTG
AACGAGCACTATCAGGATCTCGCGGATAAACCTTTTTTCGGTGGCCTCGT
GGCGTACATGAGCTCTGGCCCTGTTATTGCTATGGTGTGGGAGGGTCTAA
ATGCTGTTAAGGAGGGACGCAAGATGAGTACTGAGCGCACCTATGTTAGG
TGCCACCAAACCGGCTGATAGTGCACCTGGCACGATTCGTGGGGACTTCG
CCTTAGATGTAAGTTCGTAAATATAATGATCAAGCCTGATGGTGTCCAAC
GCGGTCTTGTTGGGGAAATTATTGGACGTTTCGAGCGCAAAGGGTTCAAA
CTCGTTGCCCTGAAGTCAATGAACGCCTCAAAGGACCTCTTGAACGAGCA
CTATCAGGATCTCGCGGATAAACCTTTTTTCGGTGGCCTCGTGGCGTACA
TGAGCTCTGGCCCTGTTATTGCTATGGTGTGGGAGGGTCTAAATGCTGTT
AAGGAGGGACGCAAGATGAGTACTGAGCGCACCTATGTTAGGTGCCACCA
AACCGGCTGATAGTGCACCTGGCACGATTCGTGGGGACTTCGCCTTAGAT
GTAAGTTCGTAAATATAATGATCAAGCCTGATGGTGTCCAACGCGGTCTT
GTTGGGGAAATTATTGGACGTTTCGAGCGCAAAGGGTTCAAACTCGTTGC
CCTGAAGTCAATGAACGCCTCAAAGGACCTCTTGAACGAGCACTATCAGG
ATCTCGCGGATAAACCTTTTTTCGGTGGCCTCGTGGCGTACATGAGCTCT
GGCCCTGTTATTGCTATGGTGTGGGAGGGTCTAAATGCTGTTAAGGAGGG
ACGCAAGATGAGTACTGAGCGCACCT
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Synonyms
Publications