EWM29213.1, cds1487 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29213.1 vs. NCBI_GenBank
Match: gi|585111733|gb|EWM29213.1| (nucleoside diphosphate kinase a [Nannochloropsis gaditana]) HSP 1 Score: 231.876 bits (590), Expect = 3.709e-77 Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
Query: 1 MSTERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDVSS 113
MSTERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDVSS
Sbjct: 1 MSTERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDVSS 113
BLAST of EWM29213.1 vs. NCBI_GenBank
Match: gi|325652098|ref|NP_001191688.1| (nucleoside diphosphate kinase A [Sus scrofa] >gi|545858761|ref|XP_005668988.1| nucleoside diphosphate kinase A isoform X1 [Sus scrofa]) HSP 1 Score: 178.333 bits (451), Expect = 2.155e-55 Identity = 83/110 (75.45%), Postives = 92/110 (83.64%), Query Frame = 0
Query: 2 STERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDV 111
S+ERT+I IKPDGVQRGLVGEII RFE+KGF+LVA+K M AS+DLL EHY DL D+PFF GLV YM SGPV+AMVWEGLN VK GR MLG T PADS PGTIRGDF + V
Sbjct: 3 SSERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFMQASEDLLKEHYIDLKDRPFFAGLVTYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQV 112
BLAST of EWM29213.1 vs. NCBI_GenBank
Match: gi|826272225|ref|XP_012516974.1| (PREDICTED: nucleoside diphosphate kinase A [Propithecus coquereli] >gi|826272228|ref|XP_012516981.1| PREDICTED: nucleoside diphosphate kinase A [Propithecus coquereli] >gi|826272231|ref|XP_012516989.1| PREDICTED: nucleoside diphosphate kinase A [Propithecus coquereli]) HSP 1 Score: 177.948 bits (450), Expect = 2.485e-55 Identity = 83/111 (74.77%), Postives = 92/111 (82.88%), Query Frame = 0
Query: 2 STERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDVS 112
+ ERT+I IKPDGVQRGLVGEII RFE+KGF+LV+LK M AS+DLL EHY DL D+PFF GLV YM SGPV+AMVWEGLN VK GR MLG T PADS PGTIRGDF + VS
Sbjct: 3 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVSLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMRSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVS 113
BLAST of EWM29213.1 vs. NCBI_GenBank
Match: gi|829891339|ref|XP_012645279.1| (nucleoside diphosphate kinase A isoform X1 [Microcebus murinus]) HSP 1 Score: 178.333 bits (451), Expect = 3.162e-55 Identity = 83/110 (75.45%), Postives = 92/110 (83.64%), Query Frame = 0
Query: 2 STERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDV 111
++ERT+I IKPDGVQRGLVGEII RFERKGF+LV+LK M AS+DLL EHY DL D+PFF GLV YM SGPV+AMVWEGLN VK GR MLG T PADS PGTIRGDF + V
Sbjct: 23 NSERTFIAIKPDGVQRGLVGEIIKRFERKGFRLVSLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMRSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQV 132
BLAST of EWM29213.1 vs. NCBI_GenBank
Match: gi|1121868944|ref|XP_019398008.1| (PREDICTED: nucleoside diphosphate kinase A-like [Crocodylus porosus]) HSP 1 Score: 177.563 bits (449), Expect = 4.687e-55 Identity = 81/109 (74.31%), Postives = 93/109 (85.32%), Query Frame = 0
Query: 3 TERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDV 111
+ERT+I IKPDGVQRGLVGEII RFE+KGFKLVALK ++AS+DLL EHY DL D+PF+ GLVAYM SGPV+AMVWEGLN +K GR MLG T PADS PGTIRGDF + +
Sbjct: 5 SERTFIAIKPDGVQRGLVGEIIKRFEQKGFKLVALKLLHASEDLLKEHYIDLKDRPFYAGLVAYMHSGPVVAMVWEGLNVIKTGRMMLGETNPADSKPGTIRGDFCVQI 113
BLAST of EWM29213.1 vs. NCBI_GenBank
Match: gi|906472750|gb|KNC32799.1| (Nucleoside diphosphate kinase [Lucilia cuprina]) HSP 1 Score: 177.563 bits (449), Expect = 5.988e-55 Identity = 83/110 (75.45%), Postives = 95/110 (86.36%), Query Frame = 0
Query: 2 STERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDV 111
+TERT+IM+KPDGVQRGLVG+II RFE+KGFKLVA+K M ASKDLL +HY DL+ +PFF GLV YMSSGPV+ MVWEGLN VK GR+MLGAT PADS PGTIRGDF + V
Sbjct: 20 NTERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVAMKFMWASKDLLEKHYADLSARPFFPGLVNYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQV 129
BLAST of EWM29213.1 vs. NCBI_GenBank
Match: gi|914560716|gb|KOB67796.1| (Nucleoside diphosphate kinase [Operophtera brumata]) HSP 1 Score: 177.178 bits (448), Expect = 6.440e-55 Identity = 84/108 (77.78%), Postives = 92/108 (85.19%), Query Frame = 0
Query: 4 ERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDV 111
ERT+IMIKPDGVQRGLVGEII RFE+KGFKLVALK + AS+ LL +HY DLA +PFF GLV YMSSGPV+ MVWEGLNAVK GR MLGAT PADSAPGTIRGD + V
Sbjct: 6 ERTFIMIKPDGVQRGLVGEIIQRFEKKGFKLVALKQVWASEQLLQQHYADLASRPFFPGLVKYMSSGPVVPMVWEGLNAVKTGRVMLGATNPADSAPGTIRGDLCIHV 113
BLAST of EWM29213.1 vs. NCBI_GenBank
Match: gi|831276690|ref|XP_012697509.1| (PREDICTED: nucleoside diphosphate kinase B isoform X1 [Clupea harengus] >gi|831276692|ref|XP_012697510.1| PREDICTED: nucleoside diphosphate kinase B isoform X1 [Clupea harengus] >gi|831276694|ref|XP_012697511.1| PREDICTED: nucleoside diphosphate kinase B isoform X2 [Clupea harengus]) HSP 1 Score: 176.792 bits (447), Expect = 6.453e-55 Identity = 82/111 (73.87%), Postives = 92/111 (82.88%), Query Frame = 0
Query: 1 MSTERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDV 111
M+ ERT+I IKPDGVQRGLVGEII RFE+KGFKLVA+K + AS+DLL EHY DL D+PF+ GL YM SGPV+AMVWEGLNAVK GR MLG T PADS PGTIRGDF + V
Sbjct: 1 MAEERTFIAIKPDGVQRGLVGEIIKRFEQKGFKLVAMKFLTASEDLLKEHYIDLKDRPFYAGLCKYMHSGPVVAMVWEGLNAVKTGRVMLGETNPADSKPGTIRGDFCIQV 111
BLAST of EWM29213.1 vs. NCBI_GenBank
Match: gi|852732951|ref|XP_012893420.1| (PREDICTED: nucleoside diphosphate kinase A [Dipodomys ordii] >gi|852732953|ref|XP_012893421.1| PREDICTED: nucleoside diphosphate kinase A [Dipodomys ordii]) HSP 1 Score: 176.792 bits (447), Expect = 8.570e-55 Identity = 83/110 (75.45%), Postives = 91/110 (82.73%), Query Frame = 0
Query: 2 STERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDV 111
TERT+I IKPDGVQRGLVGEII RFE+KGF+LV+LK M AS+DLL EHY DL D+PFF GLV YM SGPV+AMVWEGLN VK GR MLG T PADS PGTIRGDF + V
Sbjct: 3 CTERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVSLKFMQASEDLLKEHYIDLKDRPFFPGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQV 112
BLAST of EWM29213.1 vs. NCBI_GenBank
Match: gi|532013628|ref|XP_005350593.1| (PREDICTED: nucleoside diphosphate kinase A [Microtus ochrogaster] >gi|532013630|ref|XP_005350594.1| PREDICTED: nucleoside diphosphate kinase A [Microtus ochrogaster]) HSP 1 Score: 176.792 bits (447), Expect = 8.954e-55 Identity = 83/110 (75.45%), Postives = 91/110 (82.73%), Query Frame = 0
Query: 2 STERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDV 111
+TERT+I IKPDGVQRGLVGEII RFE+KGF+LV LK M AS+DLL EHY DL D+PFF GLV YM SGPV+AMVWEGLN VK GR MLG T PADS PGTIRGDF + V
Sbjct: 3 NTERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYIDLKDRPFFTGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQV 112 The following BLAST results are available for this feature:
BLAST of EWM29213.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|