EWM29213.1, cds1487 (CDS) Nannochloropsis gaditana

Overview
NameEWM29213.1
Unique Namecds1487
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:761315..761333 -
Alignment locationCM002457.1:760847..761091 -
Alignment locationCM002457.1:760654..760731 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29213.1
Productnucleoside diphosphate kinase a
Orig transcript idgnl|cribi|Naga_100007g91.6540.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:761315..761333 -
CM002457.1supercontigCM002457.1:760847..761091 -
CM002457.1supercontigCM002457.1:760654..760731 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0004518nuclease activity
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0004550nucleoside diphosphate kinase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005634nucleus
GO:0005886plasma membrane
Vocabulary: Biological Process
TermDefinition
GO:0008219cell death
GO:0065009regulation of molecular function
GO:0006810transport
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
GO:0007275multicellular organism development
GO:0006183GTP biosynthetic process
GO:0006165nucleoside diphosphate phosphorylation
GO:0006228UTP biosynthetic process
GO:0006241CTP biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR001564Nucleoside_diP_kinase
Homology
BLAST of EWM29213.1 vs. NCBI_GenBank
Match: gi|585111733|gb|EWM29213.1| (nucleoside diphosphate kinase a [Nannochloropsis gaditana])

HSP 1 Score: 231.876 bits (590), Expect = 3.709e-77
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0
Query:    1 MSTERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDVSS 113
            MSTERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDVSS
Sbjct:    1 MSTERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDVSS 113          
BLAST of EWM29213.1 vs. NCBI_GenBank
Match: gi|325652098|ref|NP_001191688.1| (nucleoside diphosphate kinase A [Sus scrofa] >gi|545858761|ref|XP_005668988.1| nucleoside diphosphate kinase A isoform X1 [Sus scrofa])

HSP 1 Score: 178.333 bits (451), Expect = 2.155e-55
Identity = 83/110 (75.45%), Postives = 92/110 (83.64%), Query Frame = 0
Query:    2 STERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDV 111
            S+ERT+I IKPDGVQRGLVGEII RFE+KGF+LVA+K M AS+DLL EHY DL D+PFF GLV YM SGPV+AMVWEGLN VK GR MLG T PADS PGTIRGDF + V
Sbjct:    3 SSERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFMQASEDLLKEHYIDLKDRPFFAGLVTYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQV 112          
BLAST of EWM29213.1 vs. NCBI_GenBank
Match: gi|826272225|ref|XP_012516974.1| (PREDICTED: nucleoside diphosphate kinase A [Propithecus coquereli] >gi|826272228|ref|XP_012516981.1| PREDICTED: nucleoside diphosphate kinase A [Propithecus coquereli] >gi|826272231|ref|XP_012516989.1| PREDICTED: nucleoside diphosphate kinase A [Propithecus coquereli])

HSP 1 Score: 177.948 bits (450), Expect = 2.485e-55
Identity = 83/111 (74.77%), Postives = 92/111 (82.88%), Query Frame = 0
Query:    2 STERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDVS 112
            + ERT+I IKPDGVQRGLVGEII RFE+KGF+LV+LK M AS+DLL EHY DL D+PFF GLV YM SGPV+AMVWEGLN VK GR MLG T PADS PGTIRGDF + VS
Sbjct:    3 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVSLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMRSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVS 113          
BLAST of EWM29213.1 vs. NCBI_GenBank
Match: gi|829891339|ref|XP_012645279.1| (nucleoside diphosphate kinase A isoform X1 [Microcebus murinus])

HSP 1 Score: 178.333 bits (451), Expect = 3.162e-55
Identity = 83/110 (75.45%), Postives = 92/110 (83.64%), Query Frame = 0
Query:    2 STERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDV 111
            ++ERT+I IKPDGVQRGLVGEII RFERKGF+LV+LK M AS+DLL EHY DL D+PFF GLV YM SGPV+AMVWEGLN VK GR MLG T PADS PGTIRGDF + V
Sbjct:   23 NSERTFIAIKPDGVQRGLVGEIIKRFERKGFRLVSLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMRSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQV 132          
BLAST of EWM29213.1 vs. NCBI_GenBank
Match: gi|1121868944|ref|XP_019398008.1| (PREDICTED: nucleoside diphosphate kinase A-like [Crocodylus porosus])

HSP 1 Score: 177.563 bits (449), Expect = 4.687e-55
Identity = 81/109 (74.31%), Postives = 93/109 (85.32%), Query Frame = 0
Query:    3 TERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDV 111
            +ERT+I IKPDGVQRGLVGEII RFE+KGFKLVALK ++AS+DLL EHY DL D+PF+ GLVAYM SGPV+AMVWEGLN +K GR MLG T PADS PGTIRGDF + +
Sbjct:    5 SERTFIAIKPDGVQRGLVGEIIKRFEQKGFKLVALKLLHASEDLLKEHYIDLKDRPFYAGLVAYMHSGPVVAMVWEGLNVIKTGRMMLGETNPADSKPGTIRGDFCVQI 113          
BLAST of EWM29213.1 vs. NCBI_GenBank
Match: gi|906472750|gb|KNC32799.1| (Nucleoside diphosphate kinase [Lucilia cuprina])

HSP 1 Score: 177.563 bits (449), Expect = 5.988e-55
Identity = 83/110 (75.45%), Postives = 95/110 (86.36%), Query Frame = 0
Query:    2 STERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDV 111
            +TERT+IM+KPDGVQRGLVG+II RFE+KGFKLVA+K M ASKDLL +HY DL+ +PFF GLV YMSSGPV+ MVWEGLN VK GR+MLGAT PADS PGTIRGDF + V
Sbjct:   20 NTERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVAMKFMWASKDLLEKHYADLSARPFFPGLVNYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQV 129          
BLAST of EWM29213.1 vs. NCBI_GenBank
Match: gi|914560716|gb|KOB67796.1| (Nucleoside diphosphate kinase [Operophtera brumata])

HSP 1 Score: 177.178 bits (448), Expect = 6.440e-55
Identity = 84/108 (77.78%), Postives = 92/108 (85.19%), Query Frame = 0
Query:    4 ERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDV 111
            ERT+IMIKPDGVQRGLVGEII RFE+KGFKLVALK + AS+ LL +HY DLA +PFF GLV YMSSGPV+ MVWEGLNAVK GR MLGAT PADSAPGTIRGD  + V
Sbjct:    6 ERTFIMIKPDGVQRGLVGEIIQRFEKKGFKLVALKQVWASEQLLQQHYADLASRPFFPGLVKYMSSGPVVPMVWEGLNAVKTGRVMLGATNPADSAPGTIRGDLCIHV 113          
BLAST of EWM29213.1 vs. NCBI_GenBank
Match: gi|831276690|ref|XP_012697509.1| (PREDICTED: nucleoside diphosphate kinase B isoform X1 [Clupea harengus] >gi|831276692|ref|XP_012697510.1| PREDICTED: nucleoside diphosphate kinase B isoform X1 [Clupea harengus] >gi|831276694|ref|XP_012697511.1| PREDICTED: nucleoside diphosphate kinase B isoform X2 [Clupea harengus])

HSP 1 Score: 176.792 bits (447), Expect = 6.453e-55
Identity = 82/111 (73.87%), Postives = 92/111 (82.88%), Query Frame = 0
Query:    1 MSTERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDV 111
            M+ ERT+I IKPDGVQRGLVGEII RFE+KGFKLVA+K + AS+DLL EHY DL D+PF+ GL  YM SGPV+AMVWEGLNAVK GR MLG T PADS PGTIRGDF + V
Sbjct:    1 MAEERTFIAIKPDGVQRGLVGEIIKRFEQKGFKLVAMKFLTASEDLLKEHYIDLKDRPFYAGLCKYMHSGPVVAMVWEGLNAVKTGRVMLGETNPADSKPGTIRGDFCIQV 111          
BLAST of EWM29213.1 vs. NCBI_GenBank
Match: gi|852732951|ref|XP_012893420.1| (PREDICTED: nucleoside diphosphate kinase A [Dipodomys ordii] >gi|852732953|ref|XP_012893421.1| PREDICTED: nucleoside diphosphate kinase A [Dipodomys ordii])

HSP 1 Score: 176.792 bits (447), Expect = 8.570e-55
Identity = 83/110 (75.45%), Postives = 91/110 (82.73%), Query Frame = 0
Query:    2 STERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDV 111
             TERT+I IKPDGVQRGLVGEII RFE+KGF+LV+LK M AS+DLL EHY DL D+PFF GLV YM SGPV+AMVWEGLN VK GR MLG T PADS PGTIRGDF + V
Sbjct:    3 CTERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVSLKFMQASEDLLKEHYIDLKDRPFFPGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQV 112          
BLAST of EWM29213.1 vs. NCBI_GenBank
Match: gi|532013628|ref|XP_005350593.1| (PREDICTED: nucleoside diphosphate kinase A [Microtus ochrogaster] >gi|532013630|ref|XP_005350594.1| PREDICTED: nucleoside diphosphate kinase A [Microtus ochrogaster])

HSP 1 Score: 176.792 bits (447), Expect = 8.954e-55
Identity = 83/110 (75.45%), Postives = 91/110 (82.73%), Query Frame = 0
Query:    2 STERTYIMIKPDGVQRGLVGEIIGRFERKGFKLVALKSMNASKDLLNEHYQDLADKPFFGGLVAYMSSGPVIAMVWEGLNAVKEGRKMLGATKPADSAPGTIRGDFALDV 111
            +TERT+I IKPDGVQRGLVGEII RFE+KGF+LV LK M AS+DLL EHY DL D+PFF GLV YM SGPV+AMVWEGLN VK GR MLG T PADS PGTIRGDF + V
Sbjct:    3 NTERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYIDLKDRPFFTGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQV 112          
The following BLAST results are available for this feature:
BLAST of EWM29213.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111733|gb|EWM29213.1|3.709e-77100.00nucleoside diphosphate kinase a [Nannochloropsis g... [more]
gi|325652098|ref|NP_001191688.1|2.155e-5575.45nucleoside diphosphate kinase A [Sus scrofa] >gi|5... [more]
gi|826272225|ref|XP_012516974.1|2.485e-5574.77PREDICTED: nucleoside diphosphate kinase A [Propit... [more]
gi|829891339|ref|XP_012645279.1|3.162e-5575.45nucleoside diphosphate kinase A isoform X1 [Microc... [more]
gi|1121868944|ref|XP_019398008.1|4.687e-5574.31PREDICTED: nucleoside diphosphate kinase A-like [C... [more]
gi|906472750|gb|KNC32799.1|5.988e-5575.45Nucleoside diphosphate kinase [Lucilia cuprina][more]
gi|914560716|gb|KOB67796.1|6.440e-5577.78Nucleoside diphosphate kinase [Operophtera brumata... [more]
gi|831276690|ref|XP_012697509.1|6.453e-5573.87PREDICTED: nucleoside diphosphate kinase B isoform... [more]
gi|852732951|ref|XP_012893420.1|8.570e-5575.45PREDICTED: nucleoside diphosphate kinase A [Dipodo... [more]
gi|532013628|ref|XP_005350593.1|8.954e-5575.45PREDICTED: nucleoside diphosphate kinase A [Microt... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1490rna1490Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications