rna1486, rna1486 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1486
Unique Name	rna1486
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3638
Alignment location	CM002457.1:753885..754438 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100007g95.6448.mrna
Orig protein id	gnl\|cribi\|Naga_100007g95.6448
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:753885..754438 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g95	gene1434	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1486	rna1486-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29121.1	cds1483	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:753885..754438-
coding sequence from alignment at CM002457.1:753885..754438-

mRNA sequence

>rna1486 ID=rna1486|Name=rna1486|organism=Nannochloropsis gaditana|type=mRNA|length=3638bp
CCTGGTTGTTTCATTTATCACTCAAGAGGATGCATTGATTAGCGCTCTCG
CCCGGCTGACCCCTTGAAGCAACTGCAACACCCGGCATGGGCATACCATG
CCGCCCACGACCTAAATTTGTGCCATGCCCACTTCCACTCACCGTGGACG
CGCTCTTCAAAAAACATCTCACACTGATTCCGTATCCTATTCTACAGCTG
TCCAAGCATACTTCAAAGGACAGAGCGGACTTGAAAAGGGGTCTTGTGAA
GATCGTGCGTGGGCAGATTGAGGTCATAGTTAGGTTCTGTTTCCCAGCAT
CAACACAATACCACGATACGGAGATCCAAGCACATTCTACAAGTGGTACA
ATAGCCGGTACGAATATCACGATGCGTGGACCTGGCACTTTGATAGCAGC
CTGGGCTGTGTTAGCAGTTGGAGTACTGCCCGCCGCTGTGTGCTGCTTGA
GCAGCGAGCGGGTCGAGAAGCTTGTGAAGAGTTTAAGTTTGAAGGACAAA
GCAGGCCAAATGACAGAACTGGATCTGGCCGTTGCTATGGATTGGAGCCA
AAAGACAGTAGACGAAACGAAAGTCCGCAAATTAATTCGTGACTATCGCA
TCGGAAGCTTTTTGAACTCCCCACTCGCGGGGGACAATCCCGGCATTTGG
ACTGCAAGGGAATGGCGGCAAGCAATGCGTACCATCCAGCGCGTTGCTGA
AGAAGAAGGTGTGCTCCCGTTGATACATGGACTTGACTCCGTACACGGGG
CGAACTATATCAAGGGTGCAACCATTTTCCCTCATCAACATGGGCTGGCA
GCAACGTTCAAACCCACGTATGCTCGCGAGGTGGGGCGAATCACGGCGCA
AGATACTATGGCTGCTGGCGTTCAGTGGATTTTCGCGCCTATACTTGACC
TTGGCGTCAACAGCAGGTGGCCACGTATGTATGAGACCTTCTCCGAGGAC
CCTCATCTGGTGAGCTCCATGGGTGCCGAGATAATTTCCGGTATACAGAG
CTTTATGCATGATAACCTGACGACAGCCGCTTGCATGAAGCACTTTATAG
CCTACAGCGCAACCACAACAGGCCATGATCAAGCGCCTGTCCTTTTAGAT
GTTCGTGATGTTGAAAACTATTACCTACCACCATATCGCGCCGCTGTCAA
AGCTGGCATTCGCACGGCTATGGAGAGCTACCAAGAAATCTCGGGCGTGC
CCATGGCCTCCTCTCGAGAATATTTGAAGAATCTTCTACGCTACGAATTG
GACTTCAAGGGCCTTCTAGTGACGGACTATGGCGAGATCAATGCGCTCCA
CGGAGAACATGCGGTGGCAAGCAATAGCAGAGAGGCGGTGCGCATCGCCA
TGGAGGACACGACCATCGATATGAGCATGACTGCTTGGGACGTTGATTTT
GCCAAAGACCTCATAAAGCTGGTGGAAGCCGGAGAAGTCTCAATTTCACG
ACTTGACGAAAGCGTAGCTCGCATTCTACAGACCAAGGAAGACTTGGGTT
TACTCGACCATCCTTATGGCTTGGTCCAGGACGAGAGCCCTCTGGACGCG
CACCTGGGCTCAGCGGCTGACAAGGAGGTTGCCTTGGACGTCATTCGTGA
ATCGGTAACGCTGCTGAAGAACGAGCAGGATGTGCTACCTCTAGATCCAA
AGCGGCAATACAATATCTTAGTGACAGGCCCCACTGCGCATTCACTAGCA
TTCCAGTGCGGGGGTTGGACAATCCATTGGCACGGGCCCTTGGGAGACGA
GGAGATAAATTACGGCAGCACGCTTTTCGATGGACTCAGGAATGTTACGG
ACTCAGTAGTCGACTTCTTGCCAGGAGTAGATATTGATGGACGCTTTATC
ACAGATAAGGATGTGTTGGCAGATCGAGCTGCCCAGGCTGATCTGATAGT
AGTGGGAATCGGAGAGGCTGCCTACGCCGAGGCCGCCGCCAATATTCAGG
ACTTAGTGCTGCCTCGGGGACAGGAGGAGTTGGTTATGCTCCTCGCTCGA
TCAAGCACAGCGCCTATCGTGACTGTGATATTTGAAGGCCGACCAAGGTT
GTTGGGCAGTATCCCCGCGCTTTCCACAGCAGTGCTTCATGCCTACCTGC
CGGGGCCGGAGGGCGGTTTGGGAGTGGCTGAAATCATGTTTGGTCGAGTG
ACTCCGTCCGGTCGGATTCCCTTTACCTATCCCAAGCATCAAAACGGCCC
CAGCCTGCTCTACTACCACAAGCTACGGCAGCGGGACTATGACGTGGAGT
GGGAGTTTGGCGTGGGTTTGTCTTACACCACCTTCGCTTACGAGGATGTT
CGAATTGCTTCAGGTCCCGTTATTGACGAGCACACGCCTGTCAATATCTC
TCTAAAAGTGCGTAACACGGGCAGAAGGCCGGGCAAGCACACTGTACTCC
TCTTTGGCTCGGACGTGGTTCGGCGGGTGACTCCAGAGGTCAAGATGCTC
AAGGCATTCAAGAAAACTCGTAATCTACAGCCAGGGCATACCGAGAGTAT
TACCTTTGTGCTCGATCCATTGGAAGACTTGTCATACTACGGAGTCGAAA
GGCATCGGATTCTGGAGGATGGTGACTGGTTGTTCGGGTTCGGTGAAAAA
GTAGACTGTCGCAAGGATCCTTCCGAGTGTCTCAAGCTGACAGTAAAGCT
CAGCGCCCAATACTTACCACTTTGCCAGGCAGTTTGCGTTGCATGGGACC
GGGTCCATCAGACATGTGGTCCTCAATCTCAAAACGTTAACACAACAGCT
CTTGTCGGCCTGGGTGGATCGGATTTTGAATCCTGCATGTCAGCCTGTGC
GGAGCAGGGTTACTGGCGTTGGGAGATGGCTGACTGCTTGCGCGATGTCG
TGATGAACCCACGTGCACTCTGCCAACATGTGAAGCGCGTATGTCCATAC
CCATTTTAGCAAGAACTAAAGTATTTATCGCTGAAGGCGTCTCTATTTTA
AACTTAAAGGACGAGGCTTGCATTCTTCGAAATGTGTACCTATTTTGATG
GATAAAATGAAACCTAAAGCTTGAAAAATAGTGGTGCTGGAGAGGGGCCT
GTATATTCAGATGCAGTCAACGTGATGTTTAAAGTGTAACTTGTGAGAAG
AGGACATTCACTGCCAAATTCCCAAAAAAAGTGATGCTTGCACAGAGCAA
TGGATGGCGTTTCGGTCGCAAGATCATTCGTCACTCTCCGTAGTCGAATC
AAAGCATTTACATTTTCTGGAGCCGGTGCGATGACATTAGTCACCTGGCG
TAGCGGAATGGTAATGAAATACCGGGGAAAAGCTTGGCATAAAAAGAAGA
CGTCGTAAAGTCAGCGAATAGTGTGTAGCATACTCACAGAAGGGGAAAGG
GCAGGGCTGTCTGCAGGACGACGTCGCCATTTTTGCCCAAAAGTAACCAA
ATTAAGAACCGTGTCGTAAGCGAGACAGCACTCCTCCGAGCTCGTGCGAA
GCGTCATTGCAGGCGTGGTCAGCCATCGTGTAGAATTAAACGTCATCTTG
GTTCCCCTTCAATGCTTGCTCTCGCAGCGCCAACCCTACCTAGGAACCGT
CCGCTGAGTATTGATTGAACATTCTTATCAATGCTTAAGACGATGTTAAG
AAGATCATACAAATTTGAAAATGAGATTAAATTTATGC

protein sequence of rna1486

>rna1486-protein ID=rna1486-protein|Name=rna1486|organism=Nannochloropsis gaditana|type=polypeptide|length=155bp
MIKGCECFLDITLTSTLTLRPASGSGKVWTKFRLMLMRQVLGPAILDIIL
DLRSDALSPKSCRQRPSRDEAATALPVFISAQRHRLARPHYIITIGTQGQ
HAGTDVMCINLISFSNLYDLLNIVLSIDKNVQSILSGRFLGRVGAARASI
EGEPR

mRNA from alignment at CM002457.1:753885..754438-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1486 ID=rna1486|Name=rna1486|organism=Nannochloropsis gaditana|type=mRNA|length=554bp|location=Sequence derived from alignment at CM002457.1:753885..754438- (Nannochloropsis gaditana)
ATGATAAAGGGATGTGAGTGCTTTTTGGACATCACGTTGACCTCCACGCT
GACTTTACGGCCGGCGAGTGGCAGCGGCAAAGTATGGACCAAGTTCAGGT
TGATGCTGATGCGTCAAGTCCTGGGGCCCGCAATCCTCGATATCATCCTC
GATCTTCGCTCGGATGCCTTATCCCCCAAATCATGTCGCCAGAGGCCCAG
CCGAGACGAAGCTGCAACCGCGCTACCAGTTTTGTGATTGCGCAGGTACA
CATGGGATTACGCCTTAAGTAGAAGAAGCATTTCGGCGCAGCGACATCGG
CTCGCGAGGCCTCATTACATCATCACAATCGGTACTCAGTACAAGTCTTA
GCGAAATAAGCATTTGTGTCACACGCTAGGGGGCAACATGCAGGAACGGA
TGTAATGTGCATAAATTTAATCTCATTTTCAAATTTGTATGATCTTCTTA
ACATCGTCTTAAGCATTGATAAGAATGTTCAATCAATACTCAGCGGACGG
TTCCTAGGTAGGGTTGGCGCTGCGAGAGCAAGCATTGAAGGGGAACCAAG
ATGA

Coding sequence (CDS) from alignment at CM002457.1:753885..754438-

>rna1486 ID=rna1486|Name=rna1486|organism=Nannochloropsis gaditana|type=CDS|length=1404bp|location=Sequence derived from alignment at CM002457.1:753885..754438- (Nannochloropsis gaditana)
GGGGCAACATGCAGGAACGGATGTAATGTGCATAAATTTAATCTCATTTT
CAAATTTGTATGATCTTCTTAACATCGTCTTAAGCATTGATAAGAATGTT
CAATCAATACTCAGCGGACGGTTCCTAGGTAGGGTTGGCGCTGCGAGAGC
AAGCATTGAAGGGGAACCAAGATGACATTTCGGCGCAGCGACATCGGCTC
GCGAGGCCTCATTACATCATCACAATCGGTACTCAATGATAAAGGGATGT
GAGTGCTTTTTGGACATCACGTTGACCTCCACGCTGACTTTACGGCCGGC
GAGTGGCAGCGGCAAAGTATGGACCAAGTTCAGGTTGATGCTGATGCGTC
AAGTCCTGGGGCCCGCAATCCTCGATATCATCCTCGATCTTCGCTCGGAT
GCCTTATCCCCCAAATCATGTCGCCAGAGGCCCAGCCGAGACGAAGCTGC
AACCGCGCTACCAGTTTTGGGGCAACATGCAGGAACGGATGTAATGTGCA
TAAATTTAATCTCATTTTCAAATTTGTATGATCTTCTTAACATCGTCTTA
AGCATTGATAAGAATGTTCAATCAATACTCAGCGGACGGTTCCTAGGTAG
GGTTGGCGCTGCGAGAGCAAGCATTGAAGGGGAACCAAGATGACATTTCG
GCGCAGCGACATCGGCTCGCGAGGCCTCATTACATCATCACAATCGGTAC
TCAATGATAAAGGGATGTGAGTGCTTTTTGGACATCACGTTGACCTCCAC
GCTGACTTTACGGCCGGCGAGTGGCAGCGGCAAAGTATGGACCAAGTTCA
GGTTGATGCTGATGCGTCAAGTCCTGGGGCCCGCAATCCTCGATATCATC
CTCGATCTTCGCTCGGATGCCTTATCCCCCAAATCATGTCGCCAGAGGCC
CAGCCGAGACGAAGCTGCAACCGCGCTACCAGTTTTGGGGCAACATGCAG
GAACGGATGTAATGTGCATAAATTTAATCTCATTTTCAAATTTGTATGAT
CTTCTTAACATCGTCTTAAGCATTGATAAGAATGTTCAATCAATACTCAG
CGGACGGTTCCTAGGTAGGGTTGGCGCTGCGAGAGCAAGCATTGAAGGGG
AACCAAGATGACATTTCGGCGCAGCGACATCGGCTCGCGAGGCCTCATTA
CATCATCACAATCGGTACTCAATGATAAAGGGATGTGAGTGCTTTTTGGA
CATCACGTTGACCTCCACGCTGACTTTACGGCCGGCGAGTGGCAGCGGCA
AAGTATGGACCAAGTTCAGGTTGATGCTGATGCGTCAAGTCCTGGGGCCC
GCAATCCTCGATATCATCCTCGATCTTCGCTCGGATGCCTTATCCCCCAA
ATCATGTCGCCAGAGGCCCAGCCGAGACGAAGCTGCAACCGCGCTACCAG
TTTT

Synonyms

Publications