EWM29121.1, cds1483 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM29121.1
Unique Name	cds1483
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002457.1:754206..754438 -
Alignment location	CM002457.1:754101..754160 -
Alignment location	CM002457.1:753885..754059 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM29121.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100007g95.6448.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:754206..754438 -
CM002457.1	supercontig	CM002457.1:754101..754160 -
CM002457.1	supercontig	CM002457.1:753885..754059 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM29121.1 vs. NCBI_GenBank
Match: gi|585111641|gb|EWM29121.1| (hypothetical protein Naga_100007g95 [Nannochloropsis gaditana])

HSP 1 Score: 317.005 bits (811), Expect = 1.788e-109
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0

Query:    1 MIKGCECFLDITLTSTLTLRPASGSGKVWTKFRLMLMRQVLGPAILDIILDLRSDALSPKSCRQRPSRDEAATALPVFISAQRHRLARPHYIITIGTQGQHAGTDVMCINLISFSNLYDLLNIVLSIDKNVQSILSGRFLGRVGAARASIEGEPR 155
            MIKGCECFLDITLTSTLTLRPASGSGKVWTKFRLMLMRQVLGPAILDIILDLRSDALSPKSCRQRPSRDEAATALPVFISAQRHRLARPHYIITIGTQGQHAGTDVMCINLISFSNLYDLLNIVLSIDKNVQSILSGRFLGRVGAARASIEGEPR
Sbjct:    1 MIKGCECFLDITLTSTLTLRPASGSGKVWTKFRLMLMRQVLGPAILDIILDLRSDALSPKSCRQRPSRDEAATALPVFISAQRHRLARPHYIITIGTQGQHAGTDVMCINLISFSNLYDLLNIVLSIDKNVQSILSGRFLGRVGAARASIEGEPR 155

The following BLAST results are available for this feature:

BLAST of EWM29121.1 vs. NCBI_GenBank

BLAST of EWM29121.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585111641\|gb\|EWM29121.1\|	1.788e-109	100.00	hypothetical protein Naga_100007g95 [Nannochlorops...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna1486	rna1486	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications