rna1481, rna1481 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1481
Unique Name	rna1481
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1557
Alignment location	CM002457.1:741123..743112 -

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Properties


Property Name	Value
Product	ubiquitin conjugating enzyme
Orig transcript id	gnl\|cribi\|Naga_100007g100.6490.mrna
Orig protein id	gnl\|cribi\|Naga_100007g100.6490
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:741123..743112 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g100	gene1429	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1481	rna1481-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29163.1	cds1478	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:741123..743112-
coding sequence from alignment at CM002457.1:741123..743112-

mRNA sequence

>rna1481 ID=rna1481|Name=rna1481|organism=Nannochloropsis gaditana|type=mRNA|length=1557bp
AGATCCGCTTGGATTATCTTCTCCGGGTGAACTACATAGCACGTGTCCAG
AGGAAGTCAACTAACAAGATACAGCACGCATTTAAAATAAAGTGCCGAGC
ACTACTTCCCAGCGCTCCCCGCGAAACCAGTATGATGTTTCAGCTGGAAT
ATGCTGTTGTGAAGATCTCGATAGAGGCTTTGAACTCCCACTTTCAGCGT
ATTAGAAAGCAGGTGACGCGTGAACTGGCCCAAATAGTTGCGCTCCTAGA
AAAGCCTCATCATAGCCCCACCTCAGATTCGACATTTTCAGCAGCATCAT
TGCATTCTCGATTGCTTAACTTACGGGAAACGTTGATTGCTGCTGATACT
GAAGAGAAAAAAATATTGGAGTTTTGTCATCGCAAAATTCAGGCTTTGAC
CTCTGCTGATGAGAATGACGCTCCCGGAGCTGGGTTGATATCAGATTCTA
ATTTGCATGCTTCGCAATTGTATAAACTATCAAGGATAGATCATGAACAG
CTTGAACGACTTATTGGATGTAGAGCAACAACTTGTGGAGCATCGAGACT
GCGCAGGAGCATTGGCATGGTGTGCGGATCACTCATCAAGGTTGCGGCGA
CTGGGCAGTCCTTTGGAATTCAAGTTGCACAAACAACAATTTTTAGAGAT
GGTGCGTCAGAAAGACCGATTAGGAGCCCTGGAGTACGCGAGTCAACATT
TTTCACCTCAAAATCTGCAGAGCTCTGCAACGTCGATGGCGCCACGCGGT
AGTGGAATTGCTTTCACGAATGCATCAGCCAATTCAGGGCTTTCGGGGGA
ACAACTCGTAGAGGTCCAACAGGCGATGGCCACCCTCGCATTAGGGGATC
CGGAGGATTGTCGTGTGCCCGATTACAGTCAATTGTTTGCAGTCGAGCGC
TGGCAAGAGCTCGGTGCTTTATTTTCCGCAGAAGCGAGGCGCTGCTACGG
CATGACCACTAAATTTACTGCCCTTGAGGCCTGCATTCAGGCCGCTCTGA
CGGCGCTCAAGACGCCCTCTTGCCGCCGTCTCGAACGAGGTGAGGCGATG
AGTGGAAATGCAGAGTCTCAAGAAACTTATTCATGCGAAACTACCGAGCA
AGAGAATAATTACAATCCAGACTGTCCCGTGTGCGCAGACCCCGGGCGCT
CCCTCGCGGTCGCCCTACCCCTCTCGCATTGCGGAAACTCATATTTGACG
TGCGCGTGCACAGGCGAGGCTATGGATGCTGCAAATCCACCGATGTTGCT
TCCCAACGGTCGAGTATATTCTCAGCGTGCTGTAAGGGAGCACTTGACAT
CTTCCGATGGATGCGGAGAAAACCGCGTTACGTGCCCGCGCACGCGGGAC
TCTTTCCCTTTGTCTAAGGTCAGGAACATCTATGTCGTCTAGTGGGCTGA
AGCTCAAATCAAGGCATTGGTGACAGTAGATATTATGCATCAAGACAATC
TGTCGGTTGAAAGGTGGACACTTTGTAAACGCACCATGAGACTTTGTAAA
ATATCTGCTTCCTTGACATGTTCAGTAAACTAAGCATCAATAACAAATTA
TGTCACA

protein sequence of rna1481

>rna1481-protein ID=rna1481-protein|Name=rna1481|organism=Nannochloropsis gaditana|type=polypeptide|length=147bp
MALKRVNKELQDISRDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVY
YLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTIS
KVLLSICSLLTDPNPDDPLVPEIAQLYRTDRSRHDATAREWTAKYAM

mRNA from alignment at CM002457.1:741123..743112-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1481 ID=rna1481|Name=rna1481|organism=Nannochloropsis gaditana|type=mRNA|length=1990bp|location=Sequence derived from alignment at CM002457.1:741123..743112- (Nannochloropsis gaditana)
CAGAGGCGCGCTTTTGAATGGAATGTTGCGCTTGCAAACAATACGGTATC
CGTGCCTTGTTTGCAGGGACATGCGCTGAGGACGAAGGGGGCGAGCGTGC
TTTCGATTTTGTTGGTGATAACGCTTCCATCGCCTTCCATGGCGTCGTCT
TGAGCACCACAATCCATCCACAGTCTAATTGTTGGCCTCTTCCACTTAGT
ATTTCAGGGCTCTAATTAACTTGTGCGAAGTGTAAACGTATGGCGTTGAA
GCGCGTTAACAAGGAGCTGCAGGACATCAGTAAGTTTGTAGGGGATAGGT
TGAAAAAGGGCGAACGATAGTTCTTTTTTCCGCGCCACGGACTTCATGAA
TGAAATTAACTTGGTCAACAGGAATCCGCACCATATAGAAACGCTCTCCT
TCATCTTTCAAGCCCTATGAATAATCTGTGGCGCCTGGTCAAGCTTTTTT
GTGTGATATCTTGCCGTAGTGCCCCCTGTCCTATTCGAAATCCGTATGTT
GACGGTTGTAATTCCTATCCGCCTAAATTCCAGAAAATTGGAAGTGCAAG
AATGCAGGTGAACTTTGATCTTCTAATTCGATGGTGCTTATTCTCACAGG
CAGGGATCCACCAGCCAACTGTTCCGCCGGGCCCGTTGGGGATGACCTCT
TCCACTGGCAGGCTACCATCATGGGTCCAGGTATGGGGCGTGGGGTACTC
GTCCGCCCGACGCACCTTTACACTGGATACAGCAGTTTTCGATTCTGCGA
GTCATTATGAGGATGTTACCACCTCTCAATTTTTATAAAAATCTTCTTCT
CATTTTTCAAACATCCATATCCACCTTCCCTTCCACCATCATTCGCCTCA
TCTTAAATCCCAGAGGACTCTCCGTATGCTGGCGGCGTCTACTACTTGAA
CATCCACTTTCCGGCTGATTACCCATTCAAGCCTCCCAAAGTTAATTTCA
CGACGCGTATCTATCACTGCAACATCAACGCCAACGGAGGCATCTGTCTG
GACATCCTCAAAGATCAGTGGAGCCCAGCCCTGACTATCTCCAAGGTTCT
CCTTTCGATCTGCTCCCTGCTCACAGATCCGAATCCTGATGATCCCCTCG
TGCCCGAGATCGCCCAGCTTTACCGCACCGACCGCAGCCGGCACGATGCC
ACGGCCAGGGAATGGACAGCGAAGTAAGGAACTGATGGCTGGGTCGGGGA
GCTGGTCATGTGTCTGCATATCTCCCTTGATGCTGAGTGTTAGCTGATCT
TGCCCCACTTTGCCTTCGCCAGCCCATTTCTCTTTCTCGAACACTCATTC
TGGTGTTATCGCATCGGGAATCTCATTGCTTCCCATGTTGTCAGATACGC
CATGTAGCGCCACTTGTTCAGAGGGGGGAAATGCCGCAAAAATGGCACAC
GGCGTTGAGGACTGAAGTTGCAGAAATAGTGAAAAGACGGCCAAAAAGCT
GTGGTCGCCAAGGAGGGGGGGCGCAGGGACGGGAGAAACACAGGGTGTGG
GGGCAGACCAGGTACGTGCATGAAAGGAATAAGACTTAGTTTTCCCTCGC
CAGAATGAGATTGCTTATTGATTAAGTGAAGCTTCGACTTACACAATCAC
ACTCTCTCACATGTTGTTTGGGTACAGACTCCCAGTCAAACTGCCGAGTA
CTCCATACCGCTGACGCGCCCTGTTTCATTTTCCAAAGTCTGAGGAGGAT
GAGCGCCAACTCCTCGTCTTGTGCAGTATCAGGTGGAACAAAGAGAAAGA
ATTGGGGAGTTTGAGGACGATGTAATGTGATAGATCCCGCGTGTACGACA
GAAACTTAATCATGAAGGAGAGACGACGGAGAGGGAAGAAAATAATTTAT
ATTAGACTCTGCAGAAGCCGTCATGTGCTCACACATCAACTATGGTCTTG
TTTACGCCTTGCTGTCTCGATTAGAATACCACTGTAAATTGCAAACGGGG
AAACTTTTATAAATTTCAAGCAGGAAGTGTGTAACTGTGG

Coding sequence (CDS) from alignment at CM002457.1:741123..743112-

>rna1481 ID=rna1481|Name=rna1481|organism=Nannochloropsis gaditana|type=CDS|length=1776bp|location=Sequence derived from alignment at CM002457.1:741123..743112- (Nannochloropsis gaditana)
ATACGCCATGTAGAGGACTCTCCGTATGCTGGCGGCGTCTACTACTTGAA
CATCCACTTTCCGGCTGATTACCCATTCAAGCCTCCCAAAGTTAATTTCA
CGACGCGTATCTATCACTGCAACATCAACGCCAACGGAGGCATCTGTCTG
GACATCCTCAAAGATCAGTGGAGCCCAGCCCTGACTATCTCCAAGGTTCT
CCTTTCGATCTGCTCCCTGCTCACAGATCCGAATCCTGATGATCCCCTCG
TGCCCGAGATCGCCCAGCTTTACCGCACCGACCGCAGCCGGCACGATGCC
ACGGCCAGGGAATGGACAGCGAAGCAGGGATCCACCAGCCAACTGTTCCG
CCGGGCCCGTTGGGGATGACCTCTTCCACTGGCAGGCTACCATCATGGGT
CCAGATGGCGTTGAAGCGCGTTAACAAGGAGCTGCAGGACATCAATACGC
CATGTAGAGGACTCTCCGTATGCTGGCGGCGTCTACTACTTGAACATCCA
CTTTCCGGCTGATTACCCATTCAAGCCTCCCAAAGTTAATTTCACGACGC
GTATCTATCACTGCAACATCAACGCCAACGGAGGCATCTGTCTGGACATC
CTCAAAGATCAGTGGAGCCCAGCCCTGACTATCTCCAAGGTTCTCCTTTC
GATCTGCTCCCTGCTCACAGATCCGAATCCTGATGATCCCCTCGTGCCCG
AGATCGCCCAGCTTTACCGCACCGACCGCAGCCGGCACGATGCCACGGCC
AGGGAATGGACAGCGAAGCAGGGATCCACCAGCCAACTGTTCCGCCGGGC
CCGTTGGGGATGACCTCTTCCACTGGCAGGCTACCATCATGGGTCCAGAT
GGCGTTGAAGCGCGTTAACAAGGAGCTGCAGGACATCAATACGCCATGTA
GAGGACTCTCCGTATGCTGGCGGCGTCTACTACTTGAACATCCACTTTCC
GGCTGATTACCCATTCAAGCCTCCCAAAGTTAATTTCACGACGCGTATCT
ATCACTGCAACATCAACGCCAACGGAGGCATCTGTCTGGACATCCTCAAA
GATCAGTGGAGCCCAGCCCTGACTATCTCCAAGGTTCTCCTTTCGATCTG
CTCCCTGCTCACAGATCCGAATCCTGATGATCCCCTCGTGCCCGAGATCG
CCCAGCTTTACCGCACCGACCGCAGCCGGCACGATGCCACGGCCAGGGAA
TGGACAGCGAAGCAGGGATCCACCAGCCAACTGTTCCGCCGGGCCCGTTG
GGGATGACCTCTTCCACTGGCAGGCTACCATCATGGGTCCAGATGGCGTT
GAAGCGCGTTAACAAGGAGCTGCAGGACATCAATACGCCATGTAGAGGAC
TCTCCGTATGCTGGCGGCGTCTACTACTTGAACATCCACTTTCCGGCTGA
TTACCCATTCAAGCCTCCCAAAGTTAATTTCACGACGCGTATCTATCACT
GCAACATCAACGCCAACGGAGGCATCTGTCTGGACATCCTCAAAGATCAG
TGGAGCCCAGCCCTGACTATCTCCAAGGTTCTCCTTTCGATCTGCTCCCT
GCTCACAGATCCGAATCCTGATGATCCCCTCGTGCCCGAGATCGCCCAGC
TTTACCGCACCGACCGCAGCCGGCACGATGCCACGGCCAGGGAATGGACA
GCGAAGCAGGGATCCACCAGCCAACTGTTCCGCCGGGCCCGTTGGGGATG
ACCTCTTCCACTGGCAGGCTACCATCATGGGTCCAGATGGCGTTGAAGCG
CGTTAACAAGGAGCTGCAGGACATCA

Synonyms

Publications