EWM29163.1, cds1478 (CDS) Nannochloropsis gaditana

Overview
NameEWM29163.1
Unique Namecds1478
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:742834..742873 -
Alignment locationCM002457.1:742433..742513 -
Alignment locationCM002457.1:741940..742249 -
Alignment locationCM002457.1:741756..741768 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29163.1
Productubiquitin conjugating enzyme
Orig transcript idgnl|cribi|Naga_100007g100.6490.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:742834..742873 -
CM002457.1supercontigCM002457.1:742433..742513 -
CM002457.1supercontigCM002457.1:741940..742249 -
CM002457.1supercontigCM002457.1:741756..741768 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR023313UBQ-conjugating_AS
IPR000608UBQ-conjugat_E2
IPR016135UBQ-conjugating_enzyme/RWD
Homology
[Close]
BLAST of EWM29163.1 vs. NCBI_GenBank
Match: gi|585111683|gb|EWM29163.1| (ubiquitin conjugating enzyme [Nannochloropsis gaditana])

HSP 1 Score: 308.531 bits (789), Expect = 1.777e-106
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0 
Query:    1 MALKRVNKELQDISRDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVYYLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQLYRTDRSRHDATAREWTAKYAM 147
            MALKRVNKELQDISRDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVYYLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQLYRTDRSRHDATAREWTAKYAM
Sbjct:    1 MALKRVNKELQDISRDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVYYLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQLYRTDRSRHDATAREWTAKYAM 147
[Close]
BLAST of EWM29163.1 vs. NCBI_GenBank
Match: gi|669150424|ref|XP_008610774.1| (ubiquitin-conjugating enzyme E2 4 [Saprolegnia diclina VS20] >gi|813142035|ref|XP_012199157.1| ubiquitin-conjugating enzyme E2 4 [Saprolegnia parasitica CBS 223.65] >gi|530737770|gb|EQC36012.1| ubiquitin-conjugating enzyme E2 4 [Saprolegnia diclina VS20] >gi|641536078|gb|KDO29974.1| ubiquitin-conjugating enzyme E2 4 [Saprolegnia parasitica CBS 223.65] >gi|1173950705|gb|OQR98652.1| ubiquitin-conjugating enzyme E2 [Achlya hypogyna])

HSP 1 Score: 296.975 bits (759), Expect = 6.700e-102
Identity = 138/147 (93.88%), Postives = 144/147 (97.96%), Query Frame = 0 
Query:    1 MALKRVNKELQDISRDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVYYLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQLYRTDRSRHDATAREWTAKYAM 147
            MALKR+NKELQD+ +DPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVY+LNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTD NPDDPLVPEIAQ+YRTDR+RHD TAREWTAKYAM
Sbjct:    1 MALKRINKELQDLGKDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVYFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAQIYRTDRARHDGTAREWTAKYAM 147
[Close]
BLAST of EWM29163.1 vs. NCBI_GenBank
Match: gi|1173944482|gb|OQR93212.1| (ubiquitin-conjugating enzyme E2 [Thraustotheca clavata])

HSP 1 Score: 295.819 bits (756), Expect = 2.052e-101
Identity = 137/147 (93.20%), Postives = 144/147 (97.96%), Query Frame = 0 
Query:    1 MALKRVNKELQDISRDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVYYLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQLYRTDRSRHDATAREWTAKYAM 147
            MALKR+NKELQD+ +DPPANCSAGPVG+DLFHWQATIMGPEDSPYAGGVY+LNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTD NPDDPLVPEIAQ+YRTDR+RHD TAREWTAKYAM
Sbjct:    1 MALKRINKELQDLGKDPPANCSAGPVGEDLFHWQATIMGPEDSPYAGGVYFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAQIYRTDRARHDGTAREWTAKYAM 147
[Close]
BLAST of EWM29163.1 vs. NCBI_GenBank
Match: gi|301122749|ref|XP_002909101.1| (ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4] >gi|675185161|ref|XP_008901465.1| ubiquitin-conjugating enzyme E2-16 kDa [Phytophthora parasitica INRA-310] >gi|695426840|ref|XP_009529522.1| hypothetical protein PHYSODRAFT_354820 [Phytophthora sojae] >gi|23394352|gb|AAN31466.1| ubiquitin-conjugating enzyme [Phytophthora infestans] >gi|262099863|gb|EEY57915.1| ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4] >gi|348675955|gb|EGZ15773.1| hypothetical protein PHYSODRAFT_354820 [Phytophthora sojae] >gi|566029745|gb|ETI52656.1| ubiquitin-conjugating enzyme E2-16 kDa [Phytophthora parasitica P1569] >gi|567967365|gb|ETK92544.1| ubiquitin-conjugating enzyme E2-16 kDa [Phytophthora parasitica] >gi|567995824|gb|ETL45952.1| ubiquitin-conjugating enzyme E2-16 kDa [Phytophthora parasitica] >gi|568025091|gb|ETL99111.1| ubiquitin-conjugating enzyme E2-16 kDa [Phytophthora parasitica] >gi|568055516|gb|ETM52261.1| ubiquitin-conjugating enzyme E2-16 kDa [Phytophthora parasitica] >gi|568098718|gb|ETN13445.1| ubiquitin-conjugating enzyme E2-16 kDa [Phytophthora parasitica INRA-310] >gi|570333350|gb|ETO81298.1| ubiquitin-conjugating enzyme E2-16 kDa [Phytophthora parasitica P1976] >gi|570957383|gb|ETP22362.1| ubiquitin-conjugating enzyme E2-16 kDa [Phytophthora parasitica CJ01A1] >gi|570992827|gb|ETP50243.1| ubiquitin-conjugating enzyme E2-16 kDa [Phytophthora parasitica P10297] >gi|725825431|gb|AIY34487.1| ubiquitin-conjugating enzyme [Phytophthora cactorum] >gi|970652363|gb|KUF91041.1| Isocitrate lyase [Phytophthora nicotianae] >gi|970663897|gb|KUG00959.1| Ubiquitin-conjugating enzyme [Phytophthora nicotianae] >gi|1214713580|gb|OWZ24467.1| Ubiquitin-conjugating enzyme E2 4 [Phytophthora megakarya])

HSP 1 Score: 295.049 bits (754), Expect = 3.879e-101
Identity = 138/146 (94.52%), Postives = 144/146 (98.63%), Query Frame = 0 
Query:    1 MALKRVNKELQDISRDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVYYLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQLYRTDRSRHDATAREWTAKYA 146
            MALKR+NKELQD+ RDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVY+LNI+FPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTD NPDDPLVPEIAQ+YRTDR+RHDATAREWTAKYA
Sbjct:    1 MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVYFLNIYFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAQIYRTDRARHDATAREWTAKYA 146
[Close]
BLAST of EWM29163.1 vs. NCBI_GenBank
Match: gi|673013810|ref|XP_008860866.1| (ubiquitin-conjugating enzyme E2-17 kDa [Aphanomyces invadans] >gi|574482464|gb|ETW09455.1| ubiquitin-conjugating enzyme E2-17 kDa [Aphanomyces invadans])

HSP 1 Score: 294.664 bits (753), Expect = 5.392e-101
Identity = 137/147 (93.20%), Postives = 144/147 (97.96%), Query Frame = 0 
Query:    1 MALKRVNKELQDISRDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVYYLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQLYRTDRSRHDATAREWTAKYAM 147
            MALKR+NKEL D+ +DPPANCSAGPVGDDLFHWQATIMGPEDSPY+GGVY+LNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTD NPDDPLVPEIAQ+YRTDRS+HDATAREWTAKYAM
Sbjct:    1 MALKRINKELLDLGKDPPANCSAGPVGDDLFHWQATIMGPEDSPYSGGVYFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAQIYRTDRSKHDATAREWTAKYAM 147
[Close]
BLAST of EWM29163.1 vs. NCBI_GenBank
Match: gi|698794030|ref|XP_009830044.1| (ubiquitin-conjugating enzyme E2-17 kDa [Aphanomyces astaci] >gi|574114633|gb|ETV80120.1| ubiquitin-conjugating enzyme E2-17 kDa [Aphanomyces astaci])

HSP 1 Score: 292.352 bits (747), Expect = 5.345e-100
Identity = 135/147 (91.84%), Postives = 143/147 (97.28%), Query Frame = 0 
Query:    1 MALKRVNKELQDISRDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVYYLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQLYRTDRSRHDATAREWTAKYAM 147
            MALKR+NKEL D+ +DPPANCSAGPVGDDLFHWQATIMGPEDSPY+GGVY+LNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTD NPDDPLVPEIAQ+YRTDR++HD TAREWTAKYAM
Sbjct:    1 MALKRINKELLDLGKDPPANCSAGPVGDDLFHWQATIMGPEDSPYSGGVYFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAQIYRTDRAKHDGTAREWTAKYAM 147
[Close]
BLAST of EWM29163.1 vs. NCBI_GenBank
Match: gi|1072234726|gb|OEU19455.1| (ubiquitin-conjugating enzyme [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 282.337 bits (721), Expect = 4.883e-96
Identity = 128/147 (87.07%), Postives = 144/147 (97.96%), Query Frame = 0 
Query:    1 MALKRVNKELQDISRDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVYYLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQLYRTDRSRHDATAREWTAKYAM 147
            M+LKR+NKEL D+ +DPPANCSAGPVGDD+FHWQATIMGP+DSPYAGGV++L+IHFPADYPFKPPKV+FTTRIYHCNIN+NGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVP+IAQL +TDR+RHD+TAREWT+KYAM
Sbjct:    1 MSLKRINKELVDLGKDPPANCSAGPVGDDMFHWQATIMGPDDSPYAGGVFFLDIHFPADYPFKPPKVHFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPDIAQLLKTDRARHDSTAREWTSKYAM 147
[Close]
BLAST of EWM29163.1 vs. NCBI_GenBank
Match: gi|1210521515|dbj|GAX19505.1| (ubiquitin-conjugating enzyme E2 D [Fistulifera solaris] >gi|1210531653|dbj|GAX09620.1| ubiquitin-conjugating enzyme E2 D [Fistulifera solaris])

HSP 1 Score: 281.952 bits (720), Expect = 6.424e-96
Identity = 127/147 (86.39%), Postives = 144/147 (97.96%), Query Frame = 0 
Query:    1 MALKRVNKELQDISRDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVYYLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQLYRTDRSRHDATAREWTAKYAM 147
            M+LKR+NKEL D+ +DPP+NCSAGPVGDD+FHWQATIMGPEDSPY+GGV++L+IHFPADYPFKPPKV+FTTRIYHCNIN+NGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVP+IAQL +TDR+RHD+TAREWT+KYAM
Sbjct:    1 MSLKRINKELVDLGKDPPSNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLDIHFPADYPFKPPKVHFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPDIAQLLKTDRARHDSTAREWTSKYAM 147
[Close]
BLAST of EWM29163.1 vs. NCBI_GenBank
Match: gi|944186131|dbj|BAT25234.1| (host ubiquitin conjugating E2 [Nitzschia sp. IriIs04])

HSP 1 Score: 281.182 bits (718), Expect = 1.162e-95
Identity = 127/147 (86.39%), Postives = 144/147 (97.96%), Query Frame = 0 
Query:    1 MALKRVNKELQDISRDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVYYLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQLYRTDRSRHDATAREWTAKYAM 147
            M+LKR+NKEL D+ +DPPANCSAGPVGDD+FHWQATIMGP+DSPYAGGV++L+IHFPADYPFKPPKV+FTTRIYHCNIN+NGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVP+IAQL +TD++RHD+TAREWT+KYAM
Sbjct:    1 MSLKRINKELVDLGKDPPANCSAGPVGDDMFHWQATIMGPDDSPYAGGVFFLDIHFPADYPFKPPKVHFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPDIAQLLKTDKARHDSTAREWTSKYAM 147
[Close]
BLAST of EWM29163.1 vs. NCBI_GenBank
Match: gi|224000567|ref|XP_002289956.1| (ubiquitin-conjugating enzyme e2-16kda, ubiquitin protein ligase [Thalassiosira pseudonana CCMP1335] >gi|220975164|gb|EED93493.1| ubiquitin-conjugating enzyme e2-16kda, ubiquitin protein ligase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 280.796 bits (717), Expect = 1.842e-95
Identity = 127/147 (86.39%), Postives = 144/147 (97.96%), Query Frame = 0 
Query:    1 MALKRVNKELQDISRDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVYYLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQLYRTDRSRHDATAREWTAKYAM 147
            M+LKR+NKEL D+ +DPPANCSAGPVGDD+FHWQATIMGP++SPYAGGV++L+IHFPADYPFKPPKV+FTTRIYHCNIN+NGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVP+IAQL +TDR+RHD+TAREWT+KYAM
Sbjct:    1 MSLKRINKELVDLGKDPPANCSAGPVGDDMFHWQATIMGPDESPYAGGVFFLDIHFPADYPFKPPKVHFTTRIYHCNINSNGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPDIAQLLKTDRARHDSTAREWTSKYAM 147
The following BLAST results are available for this feature:
BLAST of EWM29163.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111683|gb|EWM29163.1|1.777e-106100.00ubiquitin conjugating enzyme [Nannochloropsis gadi... [more]
gi|669150424|ref|XP_008610774.1|6.700e-10293.88ubiquitin-conjugating enzyme E2 4 [Saprolegnia dic... [more]
gi|1173944482|gb|OQR93212.1|2.052e-10193.20ubiquitin-conjugating enzyme E2 [Thraustotheca cla... [more]
gi|301122749|ref|XP_002909101.1|3.879e-10194.52ubiquitin-conjugating enzyme E2, putative [Phytoph... [more]
gi|673013810|ref|XP_008860866.1|5.392e-10193.20ubiquitin-conjugating enzyme E2-17 kDa [Aphanomyce... [more]
gi|698794030|ref|XP_009830044.1|5.345e-10091.84ubiquitin-conjugating enzyme E2-17 kDa [Aphanomyce... [more]
gi|1072234726|gb|OEU19455.1|4.883e-9687.07ubiquitin-conjugating enzyme [Fragilariopsis cylin... [more]
gi|1210521515|dbj|GAX19505.1|6.424e-9686.39ubiquitin-conjugating enzyme E2 D [Fistulifera sol... [more]
gi|944186131|dbj|BAT25234.1|1.162e-9586.39host ubiquitin conjugating E2 [Nitzschia sp. IriIs... [more]
gi|224000567|ref|XP_002289956.1|1.842e-9586.39ubiquitin-conjugating enzyme e2-16kda, ubiquitin p... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1481rna1481Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications