rna1480, rna1480 (mRNA) Nannochloropsis gaditana

Overview
Namerna1480
Unique Namerna1480
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1312
Alignment locationCM002457.1:738897..740901 -

Link to JBrowse

Properties
Property NameValue
Productmacrophage erythroblast attacher
Orig transcript idgnl|cribi|Naga_100007g102.6466.mrna
Orig protein idgnl|cribi|Naga_100007g102.6466
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:738897..740901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g102gene1428Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1480rna1480-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29139.1cds1477Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1480 ID=rna1480|Name=rna1480|organism=Nannochloropsis gaditana|type=mRNA|length=1312bp
AACCTGTCGTTCATTCCCGAAGCTGTCGGCACACTTTACAGGCACTCTAT
AGTCCAAGCCGTCCTTGACTGGCGTATGCATGCTCGATTAGGCCATGACA
ACAAGGCCAAAAAAGTGTTGGTCATTGTGACTGGAGGAACACTGATCATG
AAGCCAAACGCGGGAGATGGCGCATTAGATGTATGTCCTGGCTTCCTTTC
GGAGTTATTAGCATCGTCAGAATGGCGTCACCGCAATCTTCCGGAGATAG
ACGTGTTGGAATGGACAATTCTGACCGATAGTGCATGTATGGGGCCTGAG
CACTGGATCAAGATTGCCACTGACATAGAGAAGGCATATTTTGAGTATGA
CGGCTTTGTAGTCGTACATGGTACAGATACATTGGCTTACTCTGCAAGCG
CGTTAGCCTTCATGTTGGAGGATCTTGGAAAGCCTGTCATATTCACTGGG
AGCCAAATACCGCTTGCTGAGGTATACACTGATGCAAGAAATAATCTTGT
GACCTCCCTGCTCTTTGCCTGCCGTCAAGATTTCCATGAAGTGTGCATTT
TCTTTGGAAATCGGCTACTGAGGGGTTGCCGAGCCACCAAGATTGACTCC
TTCGATCTTCAAGCATTTGCGTCACCTAATTTTCCTCCGTTGGCCACAGT
GGGAGTCAATTTAGAAATTTCTTCACATTTCTCCCTCCCGCCTCGAAAGA
CAATGCGCGTTCACAAAAAAATGGACAGCAATCTGATAGTAATCCGCTTG
GTGCCCGGGTTCGAGGACGATTCACTGATCGCCATGGTCATTCACAGCAC
CCAACTTCACGGGATCATCTTACTCTTGTACGGTACTGGCAATGGGGATA
CGTCTTCGCGCTCGGGCTTGCTCGAGGCTGTCAAATTGGCGACGAGTAAG
GGCATTCTTGTAGTGGTACTTACGCAGTGCTTTCAAGGAGGTGTTTTGCT
TGAGAAATACAGCGTTGGAGTTGCGCTTCGTGCTGCAGGGGTAGTGAGTG
GTCACGACATGACGGTGGAGGCGTGCACCACGAAGCTCTCTTATCTTTTT
TCAAGGACGGGCGGAGATCTCGCAAAAATAAAGAGTCTCTTGAGCGTCGA
CTTACGAGGGGAGCTTTCATGCGACTCTCGGTACCGCAACGTTATCCAGG
ACATCCAAGCGACATCCAGGCTGTGACTTATAAATAGATATGCGTTGGGT
GAGGAGAGCCACCTTCGACTCTCTTGGAGAAAGCTTGACACAAAATGAAG
GAGTGTAAAATATGGTATAAAAATATGTTCTAAAAAAAATCATGAATGAA
TATGTGACATAA
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protein sequence of rna1480

>rna1480-protein ID=rna1480-protein|Name=rna1480|organism=Nannochloropsis gaditana|type=polypeptide|length=299bp
MNSLNDLLDVEQQLVEHRDCAGALAWCADHSSRLRRLGSPLEFKLHKQQF
LEMVRQKDRLGALEYASQHFSPQNLQSSATSMAPRGSGIAFTNASANSGL
SGEQLVEVQQAMATLALGDPEDCRVPDYSQLFAVERWQELGALFSAEARR
CYGMTTKFTALEACIQAALTALKTPSCRRLERGEAMSGNAESQETYSCET
TEQENNYNPDCPVCADPGRSLAVALPLSHCGNSYLTCACTGEAMDAANPP
MLLPNGRVYSQRAVREHLTSSDGCGENRVTCPRTRDSFPLSKVRNIYVV
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mRNA from alignment at CM002457.1:738897..740901-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1480 ID=rna1480|Name=rna1480|organism=Nannochloropsis gaditana|type=mRNA|length=2005bp|location=Sequence derived from alignment at CM002457.1:738897..740901- (Nannochloropsis gaditana)
AGATCCGCTTGGATTATCTTCTCCGGTAAGCGACCCGGAAATCATATGCG
ACTGGGCAGGGCAGGGACCAAAATTAGAGCATCTTCTTTGTCCTATTCCA
ATGTTGGGAGTAACGTGACTGTACTCACGCGAGGCTCGTCGTAGTACCAC
GAGAAATTGGGCTTAGGATTAGGTTCGGCCTCGTTCTTCGCATCCCTTTG
CCTTTTTGGCCAGCGCAAGCGAGAAGCTCAACGGAAGCATGAAGCATTAT
GTTTCAGTCTTATGCGTCTCGTCTTGTCTCACAGGGTGAACTACATAGCA
CGTGTCCAGAGGAAGTCAACTAACAAGATACAGCACGCATTTAAAATAAA
GTGCCGAGCACTACTTCCCAGCGCTCCCCGCGAAACCAGTATGATGTTTC
AGCTGGAATATGCTGTTGTGAAGATCTCGATAGAGGCTTTGAACTCCCAC
TTTCAGCGTATTAGAAAGCAGGTAGGCCACAGCGTGAAGAAGAAATGTGG
TGTCTACTAAGCTAAATATTTCTTCCATCTCGAATTTAAACCAGGTGACG
CGTGAACTGGCCCAAATAGTTGCGCTCCTAGAAAAGCCTCATCATAGCCC
CACCTCAGATTCGACATTTTCAGCAGCATCATTGCATTCTCGATTGCTTA
ACTTACGGGAAACGTTGATTGCTGCTGATACTGAAGAGAAAAAAATATTG
GAGTTTTGTCATCGCAAAATTCAGGCTTTGACCTCTGCTGATGAGAATGA
CGCTCCCGGAGCTGGGTTGATATCAGATTCTAATTTGCATGCTTCGCAAT
TGTATAAACTATCAAGGATAGATCATGAACAGCTTGAACGACTTATTGGT
GAGTACCTTCTGCGACGGGGCTACCTGGAGTGTTTTAGGCTTCTAGAATA
TGAAAGTCATGGCGGACAGACTGGAGCAGGTGTATTTGATCTAGGTATAT
TTCTTGGCTTTAAGGATGTAGAGCAACAACTTGTGGAGCATCGAGACTGC
GCAGGAGCATTGGCATGGTGTGCGGATCACTCATCAAGGTTGCGGCGACT
GGGCAGTCCTTTGGAATTCAAGTTGCACAAACAACAATTTTTAGAGATGG
TGCGTCAGAAAGACCGATTAGGAGCCCTGGAGTACGCGAGTCAACATTTT
TCACCTCAAAATCTGCAGAGCTCTGCAACGTCGATGGCGCCACGCGGTAG
TGGAATTGCTTTCACGAATGCATCAGCCAATTCAGGGCTTTCGGGGGAAC
AACTCGTAGAGGTCCAACAGGCGATGGCCACCCTCGCATTAGGGGATCCG
GAGGATTGTCGTGTGCCCGATTACAGTCAATTGTTTGCAGTCGAGCGCTG
GCAAGAGCTCGGTGCTTTATTTTCCGCAGAAGCGAGGCGCTGCTACGGCA
TGACCACTAAATTTACTGCCCTTGAGGCCTGCATTCAGGCCGCTCTGACG
GCGCTCAAGACGCCCTCTTGCCGCCGTCTCGAACGAGGTGAGGCGATGAG
TGGAAATGCAGAGTCTCAAGAAACTTATTCATGCGAAACTACCGAGCAAG
AGAATAATTACAATCCAGACTGTCCCGTGTGCGCAGACCCCGGGCGCTCC
CTCGCGGTCGCCCTACCCCTCTCGCATTGCGGAAACTCATATTTGACGTG
CGCGTGCACAGGCGAGGCTATGGATGCTGCAAATCCACCGATGTTGCTTC
CCAACGGTCGAGTATATTCTCAGCGTGCTGTAAGGGAGCACTTGACATCT
TCCGATGGATGCGGAGAAAACCGCGTTACGTGCCCGCGCACGCGGGACTC
TTTCCCTTTGTCTAAGGTCAGGAACATCTATGTCGTCTAGTGGGCTGAAG
CTCAAATCAAGGCATTGGTGACAGTAGATATTATGCATCAAGACAATCTG
TCGGTTGAAAGGTGGACACTTTGTAAACGCACCATGAGACTTTGTAAAAT
ATCTGCTTCCTTGACATGTTCAGTAAACTAAGCATCAATAACAAATTATG
TCACA
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Coding sequence (CDS) from alignment at CM002457.1:738897..740901-

>rna1480 ID=rna1480|Name=rna1480|organism=Nannochloropsis gaditana|type=CDS|length=1800bp|location=Sequence derived from alignment at CM002457.1:738897..740901- (Nannochloropsis gaditana)
GATGTAGAGCAACAACTTGTGGAGCATCGAGACTGCGCAGGAGCATTGGC
ATGGTGTGCGGATCACTCATCAAGGTTGCGGCGACTGGGCAGTCCTTTGG
AATTCAAGTTGCACAAACAACAATTTTTAGAGATGGTGCGTCAGAAAGAC
CGATTAGGAGCCCTGGAGTACGCGAGTCAACATTTTTCACCTCAAAATCT
GCAGAGCTCTGCAACGTCGATGGCGCCACGCGGTAGTGGAATTGCTTTCA
CGAATGCATCAGCCAATTCAGGGCTTTCGGGGGAACAACTCGTAGAGGTC
CAACAGGCGATGGCCACCCTCGCATTAGGGGATCCGGAGGATTGTCGTGT
GCCCGATTACAGTCAATTGTTTGCAGTCGAGCGCTGGCAAGAGCTCGGTG
CTTTATTTTCCGCAGAAGCGAGGCGCTGCTACGGCATGACCACTAAATTT
ACTGCCCTTGAGGCCTGCATTCAGGCCGCTCTGACGGCGCTCAAGACGCC
CTCTTGCCGCCGTCTCGAACGAGGTGAGGCGATGAGTGGAAATGCAGAGT
CTCAAGAAACTTATTCATGCGAAACTACCGAGCAAGAGAATAATTACAAT
CCAGACTGTCCCGTGTGCGCAGACCCCGGGCGCTCCCTCGCGGTCGCCCT
ACCCCTCTCGCATTGCGGAAACTCATATTTGACGTGCGCGTGCACAGGCG
AGGCTATGGATGCTGCAAATCCACCGATGTTGCTTCCCAACGGTCGAGTA
TATTCTCAGCGTGCTGTAAGGGAGCACTTGACATCTTCCGATGGATGCGG
AGAAAACCGCGTTACGTGCCCGCGCACGCGGGACTCTTTCCCTTTGTCTA
AGGTCAGGAACATCTATGTCGTCTAGATGAACAGCTTGAACGACTTATTG
GATGTAGAGCAACAACTTGTGGAGCATCGAGACTGCGCAGGAGCATTGGC
ATGGTGTGCGGATCACTCATCAAGGTTGCGGCGACTGGGCAGTCCTTTGG
AATTCAAGTTGCACAAACAACAATTTTTAGAGATGGTGCGTCAGAAAGAC
CGATTAGGAGCCCTGGAGTACGCGAGTCAACATTTTTCACCTCAAAATCT
GCAGAGCTCTGCAACGTCGATGGCGCCACGCGGTAGTGGAATTGCTTTCA
CGAATGCATCAGCCAATTCAGGGCTTTCGGGGGAACAACTCGTAGAGGTC
CAACAGGCGATGGCCACCCTCGCATTAGGGGATCCGGAGGATTGTCGTGT
GCCCGATTACAGTCAATTGTTTGCAGTCGAGCGCTGGCAAGAGCTCGGTG
CTTTATTTTCCGCAGAAGCGAGGCGCTGCTACGGCATGACCACTAAATTT
ACTGCCCTTGAGGCCTGCATTCAGGCCGCTCTGACGGCGCTCAAGACGCC
CTCTTGCCGCCGTCTCGAACGAGGTGAGGCGATGAGTGGAAATGCAGAGT
CTCAAGAAACTTATTCATGCGAAACTACCGAGCAAGAGAATAATTACAAT
CCAGACTGTCCCGTGTGCGCAGACCCCGGGCGCTCCCTCGCGGTCGCCCT
ACCCCTCTCGCATTGCGGAAACTCATATTTGACGTGCGCGTGCACAGGCG
AGGCTATGGATGCTGCAAATCCACCGATGTTGCTTCCCAACGGTCGAGTA
TATTCTCAGCGTGCTGTAAGGGAGCACTTGACATCTTCCGATGGATGCGG
AGAAAACCGCGTTACGTGCCCGCGCACGCGGGACTCTTTCCCTTTGTCTA
AGGTCAGGAACATCTATGTCGTCTAGATGAACAGCTTGAACGACTTATTG
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Synonyms
Publications