rna148, rna148 (mRNA) Nannochloropsis gaditana

Overview
Namerna148
Unique Namerna148
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2581
Alignment locationCM002455.1:383396..384058 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100013g74.9769.mrna
Orig protein idgnl|cribi|Naga_100013g74.9769
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:383396..384058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100013g74gene141Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna148rna148-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30481.1cds148Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna148 ID=rna148|Name=rna148|organism=Nannochloropsis gaditana|type=mRNA|length=2581bp
ATGCTCGCTGTGAGGTACAACGGAGGCATAAACGACGCAGCTACTACAGT
GGAATATTCTTTCCAGAACTGTGTCCCGTCTATGATTTCGTCGCGACGCC
CGGGGCTACTCCTGCTGCTCCCGGTCCTCGCCATGGTAAAGCCGACGGCC
TGTTTTTTGCGGCCCGTCAGGACCGTACTACCTTCGCGGCATCACCATAT
AGCGACATTAATGGGCTGTAGAGGCCGATCACTAGGAGAAATTCCCTCGG
CAATGTCCCCAAGACGCGCGCGCCCTCCTTGTGCAACCACCGCCGCCGCC
TCCGTCAGCGCAACCGCTGCCCCTGCCAAAGCGGTCTCTCCTCCAGCTAC
CACGCTACAGCAACGCAGTGCAGCATTGACGCAAGTCCGTGATGAATTGT
CCAAGCGTGGACTCGCTGCATTCATTGTTCCGTCTGGCGATCCCCACTTA
TCGGAATACCCCGCCGACCACTTCTGCCGCAGGGCCTTTATCTCCGGCTT
TGATGGATCCGCCGGCACTGCTGTAGTGACGCCCACGCAGGCATTACTGT
GGACAGATGGACGTTATCACTTGCAAGCAGAGCAGCAGCTTGGGCCTGAC
TGGACGCTGATGCGGGAAGGACAAAAGGGCGTGCCCTCCCTGACTGCTTA
CCTTCAGGAAGAGCTATCGGCCCAGGCGGTCGTGGGGCTGGACCCCACGG
TGCATCCGGTCAAACTCGTCCAGAACCTCGCGCAGGCGCTTGGGAGCAAG
AAGGTGCAGGTGCAGCCCTTGAACGTGGCGGAAACGAACCCGATCGACCT
GGCGTGGAGAACGGCGGGGGGGCGACCGCCCGCGCCGCAAGCACCGGTGC
GAATCCATCCCTTGGCTTTCGCCGGGGAGGCCGTGAGCGACAAGGTGAAA
AGGCTGAGCGAAGAAATGGCCAAGGAGGGGGCGGACGTCCTGGTGGCGGG
GACTTTGGATGAGGTAGCTTGGCTGTTGAACATCCGGGGCGAGGACGTGC
CCAACTGTCCTTTGCCAGTGGCCTACGCGGTGCTGGAGCGAGAGGGGGCC
TTTGATAGCGGTAACGGCGGGAAGGAAAAAAGTGCCAGGGTTATTGTCTT
CGTGGAGGACGCAAAACTGGGTCCTACGGCGCGCGCCCACCTGGAGAAGG
ATTGCCGGGCCGAGATTCGCCCGTATGCCGAGATCTTTTCTTACCTATCA
GGGGCCCATGCGAGCGGCCGAAAAATCTGGCTGGACCCCGACAAGAGCAA
TTACGCCCTTCTTCGAGCCGCATCGATGCCCCCTGAGAAAGGAAAAGTCA
CGGACGAGAAAGTGAGCGGAAGCACTGGTGATGGAGCCGTGGCTGCAACC
GGCAAGGTACCCTCCGAGCCGTCCCTCCTACTCCACCCCACCCCTATTAC
CCTGTTCAAAGCCGTCAAAAACGAGGCAGAGCTCGAAGGGATGCGCGCCG
CGCATTTACGAGACGGTGCGGCTGAGGTGGAGTTCTTGGCATGGCTGGAG
AAGGAAATCCAAACGCGCTCTGTGAGCGAGGTGGAGATTGATCAGGTCCT
GACGGGTTTCCGATCCCGTCGTGAGAAATTTCTGGGGGTAAGCTTCGACA
CAATCGCGGGAAGCGGGCCAAACGGCGCGATCATCCACTACCGAGCCATG
CCTGAGACCTGTGGAGAAATGACTAAGGAGACGATGCTCCTCCTGGACTC
TGGTGGGCAGTACGAGGACGGGACGACTGACGTGACCCGGACGGTGCACT
TTGGCGAGCCGACCGAGGAAGAGAAGGAGGCATTTACGCGCGTATTGCAA
GGGCACATCGGCGTGGACACGGCCGTTTTCCCTGAGGGTACGCCTGGCTT
CGTCCTGGACGCGTACGCCCGTCGATCCTTGTGGCAAGCGGGTTCCGACT
ACGCCCATGGCACGGGCCACGGGGTGGGGGCGGCTCTTAATGTCCACGAA
GGCCCGCACGGAATATCTTTTAATTTCGCGAACCGAACGCCGCTTCAAGC
AGGCATGATAGTGAGCAACGAACCAGGGTACTATGCCTCGGGGGTGTTCG
GGATTCGGATCGAGAATTTGCTGATCGTCGTGGAGAGAGCAGGGCTGGGG
GGGGTCGGAGGGCAGGATCCCCGGCAACGCAAGTTTTTGGGGTTTGAACG
GCTGACATACATACCCATCTCTAAGCGACTTATCAAACAAGACCTGCTCT
CGCCTGAAGAGGTGAAGTGGGTGGACCGGTATCACGCTGAGGTGTGGGAG
CGCATCAGTCCGCTGCTGACATCCTCTGAGGCCGAAGCATGGTTGAGGGA
GGCGACAGCACCCATGGTATGCTAATCCTCAGGACAAAAGAAAAATTCGA
AATGGTTGAGACATTCAGACGTGATTTCGATTACAGGGTGCCCAGCATTG
CCGTTGACGAATGTGTCTTACATGTTGTGCTGCGATGTTGGCCTGGCTCA
CTTGACGTCTGCCCCGTCAAAATGCTTGCTTGCCTCGATCCGTACCATGA
GTCGTGACGCATGGCTTCAGGCCAACAGCAAGAAGAAAATACTCAAAGAA
TCAGCACGAAATTCTAATACATGTCGGCCTG
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protein sequence of rna148

>rna148-protein ID=rna148-protein|Name=rna148|organism=Nannochloropsis gaditana|type=polypeptide|length=172bp
MEKSCRDSEKDSTGDEKEEGVNICTLLLPLLVLGLGRTTLSMSLLRRLGW
TFELACLLLVQNVTRASNGKGREQSAPQDDLVSADQRSTQSRLSLTSLMC
PISASVEHFPQTMGFPVPLAFLPSSESFPSVTAATACSSLKGNKMELWVN
FNNYQLFELSIRRGRMSQGMTL
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mRNA from alignment at CM002455.1:383396..384058+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna148 ID=rna148|Name=rna148|organism=Nannochloropsis gaditana|type=mRNA|length=663bp|location=Sequence derived from alignment at CM002455.1:383396..384058+ (Nannochloropsis gaditana)
ATGGAAAAATCATGCAGAGATAGTGAAAAGGACAGTACAGGcgacgaaaa
ggaagaaggcgtgAACATTTGTaccttgcttcttcctctccttgtcctgg
gCCTAGGCCGAACCACGCTTAGTATGTCCCTCTTACGTCGGCTGGGATGG
ACATTTGAGCTCGCTTGTCTCCTGCTTGTACAAAACGTGACAAGGGCGAG
CAATGGCAAGGGCCGTGAGCAGAGCGCGCCGTCGCCGACACGAGACGTGG
GAAGATGAGAGAGAGCCTCGGCAGGGCTGTCAAAAAAATTGCGCCGTGGT
CGCGCAAGGCAAGACGATTTAGTTTCCGCTGACCAGCGCAGCACGCAATC
ACGCTTGTCGCTCACCAGTCTGATGTGTCCGATCTCAGCCAGTGTGGAGC
ATTTCCCTCAGACCATGGGATTCCCGGTGCCCTTAGCCTTTCTTCCGTCT
TCGGAATCTTTTCCTTCTGTAACAGCGGCAACGGCATGCTCCTCTCTCAA
AGGAAATAAAATGTGCCAGCACTTATTTTGAGGGAGAAATTGCATTAAAG
TATGGTTGACAATGACCCGACCAATCAGGGAGTTATGGGTCAACTTTAAC
AATTATCAGCTGTTCGAACTTTCGATTCGTCGAGGGAGAATGTCTCAAGG
CATGACATTGTAA
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Coding sequence (CDS) from alignment at CM002455.1:383396..384058+

>rna148 ID=rna148|Name=rna148|organism=Nannochloropsis gaditana|type=CDS|length=1557bp|location=Sequence derived from alignment at CM002455.1:383396..384058+ (Nannochloropsis gaditana)
ATGGAAAAATCATGCAGAGATAGTGAAAAGGACAGTACAGGcgacgaaaa
ggaagaaggcgtgAACATTTGTaccttgcttcttcctctccttgtcctgg
gCCTAGGCCGAACCACGCTTAGTATGTCCCTCTTACGTCGGCTGGGATGG
ACATTTGAGCTCGCTTGTCTCCTGCTTGTACAAAACGTGACAAGGGCGAG
CAATGGCAAGGGCCGTGAGCAGAGCGCGCCGCAAGACGATTTAGTTTCCG
CTGACCAGCGCAGCACGCAATCACGCTTGTCGCTCACCAGTCTGATGTGT
CCGATCTCAGCCAGTGTGGAGCATTTCCCTCAGACCATGGGATTCCCGGT
GCCCTTAGCCTTTCTTCCGTCTTCGGAATCTTTTCCTTCTGTAACAGCGG
CAACGGCATGCTCCTCTCTCAAAGGAAATAAAATGGAGTTATGGGTCAAC
TTTAACAATTATCAGCTGTTCGAACTTTCGATTCGTCGAGGGAGAATGTC
TCAAGGCATGACATTGTAAATGGAAAAATCATGCAGAGATAGTGAAAAGG
ACAGTACAGGcgacgaaaaggaagaaggcgtgAACATTTGTaccttgctt
cttcctctccttgtcctgggCCTAGGCCGAACCACGCTTAGTATGTCCCT
CTTACGTCGGCTGGGATGGACATTTGAGCTCGCTTGTCTCCTGCTTGTAC
AAAACGTGACAAGGGCGAGCAATGGCAAGGGCCGTGAGCAGAGCGCGCCG
CAAGACGATTTAGTTTCCGCTGACCAGCGCAGCACGCAATCACGCTTGTC
GCTCACCAGTCTGATGTGTCCGATCTCAGCCAGTGTGGAGCATTTCCCTC
AGACCATGGGATTCCCGGTGCCCTTAGCCTTTCTTCCGTCTTCGGAATCT
TTTCCTTCTGTAACAGCGGCAACGGCATGCTCCTCTCTCAAAGGAAATAA
AATGGAGTTATGGGTCAACTTTAACAATTATCAGCTGTTCGAACTTTCGA
TTCGTCGAGGGAGAATGTCTCAAGGCATGACATTGTAAATGGAAAAATCA
TGCAGAGATAGTGAAAAGGACAGTACAGGcgacgaaaaggaagaaggcgt
gAACATTTGTaccttgcttcttcctctccttgtcctgggCCTAGGCCGAA
CCACGCTTAGTATGTCCCTCTTACGTCGGCTGGGATGGACATTTGAGCTC
GCTTGTCTCCTGCTTGTACAAAACGTGACAAGGGCGAGCAATGGCAAGGG
CCGTGAGCAGAGCGCGCCGCAAGACGATTTAGTTTCCGCTGACCAGCGCA
GCACGCAATCACGCTTGTCGCTCACCAGTCTGATGTGTCCGATCTCAGCC
AGTGTGGAGCATTTCCCTCAGACCATGGGATTCCCGGTGCCCTTAGCCTT
TCTTCCGTCTTCGGAATCTTTTCCTTCTGTAACAGCGGCAACGGCATGCT
CCTCTCTCAAAGGAAATAAAATGGAGTTATGGGTCAACTTTAACAATTAT
CAGCTGTTCGAACTTTCGATTCGTCGAGGGAGAATGTCTCAAGGCATGAC
ATTGTAA
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Synonyms
Publications