rna1476, rna1476 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1476
Unique Name	rna1476
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3201
Alignment location	CM002457.1:728668..731523 +

Link to JBrowse

Properties


Property Name	Value
Product	rna binding s1 domain protein
Orig transcript id	gnl\|cribi\|Naga_100007g107.6471.mrna
Orig protein id	gnl\|cribi\|Naga_100007g107.6471
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:728668..731523 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g107	gene1424	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1476	rna1476-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29144.1	cds1473	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:728668..731523+
coding sequence from alignment at CM002457.1:728668..731523+

mRNA sequence

>rna1476 ID=rna1476|Name=rna1476|organism=Nannochloropsis gaditana|type=mRNA|length=3201bp
CCTTACTTACTTCCCGGCACGCTCCTGAATCCACATTTCGCCCGTGAGTA
TCATTCGAGCGGGTTGAGCCAATGTCTATACCGTTATTTACTCGCGTAAG
TTGTGCATGAAAGCTAGCATCAAGGCCCATTTGTCTCCTGTAAGCGTTTT
CTTTCAGAATTCTTAGGGAAGACGAGAACTGCTCATATAGTACACCCACC
CACTGGCAGCATTAAGCCTACTTCAGCATTGATTGCGATTGGTGGAAACT
GATTTTTTGATCAGCCCACCTCGTTATTGATGATCATGGTCAATGCATAT
TTTTTTCTCGCCTTGCCACTCCTTCGCAAGACCTTCCTTGCTATTAATTG
CATGGCGGAAAGGCATCCATTCTCATAGTAATTTGCCCAATATCTTCTCT
CTAGGGCTGGTTACATCAATATGACATCTCTACAAACTGCCGCAGCAGAG
ATGGGAAAAGATGTTGAATTCGACCCTGCAGCAGTGTCAATTATACGTCA
GCACTGGATTGACAGACAGCTCAAGAAGCGAGAGCTGGAGTTTACCGAAT
ATCGAACTGTAACTGTCTTTTGTGGAACCTACAATGTAAATGCAAAGATC
ATCGCCGACGAGGAAATTCAGCGGTTAGAAGAATGGCTTTTTCCAGATGC
AGGAGAGTTGGCAGACATATTTGCAGTTGGTTTTCAAGAGGTCGTGGATT
TGAACGCGGTGAATGTAGCCATGGATGGCAAGTCTCAGCAAAGAGCGCAG
GCCTGGCAAGATAAACTTGATGCTGTACTTAACAATAAGAGGCGCGAAGA
GCGTTATGTGCTGGTGGCAGAAAGGCATTTGGTGGGCATTCTCCTTCTTG
TCTTCGTCAAGGGGGTGCATTCGAAAAAAGTTCGTGAAGTTTACGGGGCC
TCTGTGGGCGTTGGTTTGATGGGAATGGCGGGCAACAAAGGTGGCGTTTC
CATGCGTCTCAAGTTCTATGACTCATATTTATGTTTTGTGTGTGCGCACC
TGGCAGCGCACAGAGAAAACGTTGAAGGCAGAAATAGTGATTTTACTAAC
ATTCTGCAAAAGACGATTTTTGTCGACAAGGCGCTGAGTAGCGAGGCAGA
TACACCCGTAACGGGTCAAGGTGATGTCACCGAGGAGACTCGGAAGTACT
TCTCGGAAGTGCTTGACGTAGAGTCTACTTTACAGACTGGCATTTCGATC
TTAGATCATGACGTTGTGTTCTTTATGGGTGATTTAAATTACCGGCTAGA
CGAATCTGTGGACACGGAAGAGTGTTTCGCCAAACTAAAGGCACATGATC
TTGATTTTCTGCAGCGCTACGATCAGCTCAATATGGAACGAATCCAGGGC
CGTGTCTTCTCCGGATTCAGTGAGTCGCCGTTAAATTTCCTCCCTACCTA
CAAGTATCAGCCGGGCACTTCCTCATATGAGCGGCGACCGGAGAAAAAAT
TGCGTTGCCCAGCCTGGTGCGATCGTATCCTCTGGCGGGCCAAAGAGCCT
GGGCAAGTGCGATGCCTATCATACGGGCGGGCGGAGCTTGGCCTCTCAGA
CCACAAGCCGGTGGCAGCGCAGCTGCTGACCAAAGTTCGCATGGTTGTGA
AAGCACAGCGACAAGAAGTGGCCGCCGAGATTCACCGCCTTTTGGACAAA
GTGGAAAATGACCAACACCCCAAAGTGACCCTTGAGGTATTTGACAACAG
CACCTTAGGTTCTCCGCGACCACTGAACACAATTGATTTTGGTCCTGTAA
GATACGGCGTGGAATGCAGGCAAGCTCTTACAATTACCAACGTGTCAAAT
GTAGCAGCTCACTTCCGTTTTGTTCCCAAACTTGAGGAGGAGACTATCTG
CAAAAGTTGGCTCAGCATCCAGCCTCGCTTCGGAATGTTGCTACCCAATG
AGGTTGGCCAAATAAATTTTAAAATTTTAATAGACCTTAAAACGGCTAAG
ATGCTCAACACAGGACGTGACTTGCTGGATGACATTTTAATTCTACGCCT
CGAGAACGGTCAAGACTTTTTCTTAAGCGTTGGTGGCACGTACGCTCGAT
CAGCTTTTGGGATGGATCTAGAGGATCTCGCCAGTTGCCACGGGCCTGTT
CGCTTTCTTCCCCTCACTGCAGCAAAGTGGTCCCAGTTCCAGTCGAGCAC
TTCGACCGCAGACAAGCCCCATCTGCCACCTACATCGGTTGGAGGTCCAA
CACTCTCTGTACCAAAAGAGCTTTGGCGGTTAGTCGATGCTCTTTACCGT
CGAGGTCTCACGGAAAAAGACCTCTTTATCCAACCGGGTGTTTTGACTGA
AGTTGAAGCTGTGCGGGAGGCTCTCGACACGGGCGAAGAATTGGAAGAGA
ACGTTTCCGTGCATTCTCTCACAGAAGTCCTCCTAAGCTTTCTCACGTCG
CTTGCCAGTCCTGTGATTCCGAGAAATCTCCTTCCTTCTGTCGAAATTGA
TGCTCAAATATTACGGCCTTGGACAAGACGCTTCTTGGAACTGCTACCAC
CCTTGAACTACAATATTTTCGTCTACCTAATTTCTTTTTTCCGCGAAGTA
TTGAAGTATCATGAGTCTAACCGGCTCAATACTGAGAAATTGGCTACAAT
ATGCAGCAAGACCTTTTTGCCATGCAATGAGCTCCATTGGGGCGACTCAG
TCGAAGTGGCTAGCGGTCCAGCAGTTGGAAAAGGTGAGGAGCACCAGCGC
CTTCAAAGTATGCAAGTCATCTTTCATTACTTCCTGACCACAAGCGTCTT
TTGAGTGACAAATGAGGACCAGCCAGTCTGAAGATATGTTTGTCAATAGA
TACTGAGTACATTCATTGTACGTGCGACGGGCCTCGATACGCTGGCTCAG
GCAAAGAGCTCGAGTCAAATTGGAAAAGAAGGCATGTTGTAAATATTGTA
TTATCGAACTATTTATGCGTAAATACAAAAGCGCTTCGGGGTGAAAATTG
CTTTTTGACTGAGTCCATGACAGATCCAAGGCCTGGACTAAATCTCTCTG
CGAGTATTGTCAAGTCACTTCTAATTTGATAATTATTGCTGTTTCATTTC
TCACACCCTCTAAGGCTCATGTAGTCTGGATAAAGTATCTTGAGGGCATG
GGCCACTGCCACAGCAGCACGGGCCACGATTAATGGGGAATTTAACGGCA
TAAAAAGCGATGCAGTAGTCACGGCTACAACCAAAGAATTTATCCTTTAC
A

protein sequence of rna1476

>rna1476-protein ID=rna1476-protein|Name=rna1476|organism=Nannochloropsis gaditana|type=polypeptide|length=409bp
MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTK
RTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFL
SGTVASVQAYGAFIRLDDADLDGLLPTGDMDGKLESGQRVQVRITDVDTE
RNRITLSNLPLLRGKRTRFALNKEENDELAVIAARSGLYASELPDVFEGP
DDDADWEAAFAFKGFEDGGDGMAEEEVGGPEALFGEEPEEDDEEFSMSSI
NAFRSPAYKKEKGLMAEDEEEADEGFKYGGEAYFPEDDEADDAISGTFTK
QYDTQIPQLSEDELKALIRKAQGTRRNVTEEWAEEEAEEREYLTVSMVPS
KRKNTALMMKQVVPTQSDAILAKPRMPIYFSKKLSAVQQVELMEELERLV
NDDPLALVK

mRNA from alignment at CM002457.1:728668..731523+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1476 ID=rna1476|Name=rna1476|organism=Nannochloropsis gaditana|type=mRNA|length=2856bp|location=Sequence derived from alignment at CM002457.1:728668..731523+ (Nannochloropsis gaditana)
CCTCGTGGCTCGCTCCGCTCCCTCGTGGCTGCAGGAGCGAGGTTGCACAT
TGCCCGACAGTGACGACTGTCTGTGCATTTCCTATGAAGTCATGTAGTCC
AAACCTGCACATAACTGATACCACAATTGGAAGGCACACATTACCTTTTC
CATACTGAGAAGAAGTTCCTAAATGTGTCGCTAGAAAGTGTGTTGATGCG
GGTCCAACACGCCACCACAACTGATCTTTTCAGCCACTCCTTGTGAATGC
TCACCAAGCTTGCCTTGCGTGTTTCGGCTCGTCCTTTCAAACGAAGAACT
TGACCATTTGACTCACTCATATCGACCATGTCTCTTTATATATCTACAGG
GAGTGGTGTCAGATTTAATTGACCATGCGCTCAGCTAGCATATTAGTATC
CTTACCACTGGTGATCCCACAGGTGTTGGCTGGCTTTTTGGGAGGTGAGC
ATCTATTTACGACCGTCATTAAGAGGGTTCAGTTATGGTATAACATTCAT
GGCCCGAGAGCGCGGCGTGGAAAAAAGGGATGACTTTGTCACTTTCCCAG
GATATGAAGCCCCTTCGGCCAATTTACAAATGTGACATGGATACACAAGA
CTTCGTGCGTTTAAGTATCTTACTTTTTCCCGCTTCTCTCTCCATATATT
TCAGCCGGCCGCGACCAACAAGCGTTCATAGTGGGTTGCATCAAGCAGCG
GCCTCATTTTCTGTCAGTTTCCTCCTGTAACCACCCGAAAAAGATCCATT
GCATCACGGTTGAGGGCCGCAATACCCGGCGCAGGTCGCAGATCTGGCCA
CTTTggacgggcgagggggcTGGAGTAAGCGAGCTAGCCACTCCTGTGGC
GGAGCTGACGATAGAAAGCCAAGCTCCCGAGCCAGAGAGTGATGGCAGTG
CAACGTTAAAAGATGAGAAGAAGCCTCGTGAGAAGCGTGTGCCCCTCGCT
GACTTGACCGCAGGCGCGGAGTTTGCGGGCAAGGTCAAGGGTATCAAAGA
CTTTGGAATATTTGTGGACATCGGCGCAGAGAGCGATGGGCTGGTGCATA
TTTCACAAATGTCTTCGACCTTCGTTTCAAGCCCGTCAGATCTCGCTGCA
GTGGGTGACTCCGTGACTGTACGCGTGCTAAGTGTGGATGCGGACAAGCG
CCAAATCGCCCTCACTATGAAAACTGAGGCCGAGGCAAATGCTCCGCGTC
CTACCAAACGCACATCGAAGAGGCGTCCAGCGGATCGGGACGATGCAAAT
CCatcagacgaggaggacgatcaAGGTGATGGCGATGCCTTGCGTGACGC
ACCAGTGGGAGACAAGGACGTCAGCGCTTTCGAACATTATGACCCCAAGA
AATTTCTTAGCGGGACTGTTGCTTCGGTACAAGCTTATGGGGCCTTCATC
CGGCTGGATGATGCCGACCTCGACGGTCTGCTGCCCACAGGAGACATGGA
CGGCAAGCTGGAGTCTGGCCAGCGTGTGCAGGTGCGGATCACGGACGTTG
ACACAGAGCGCAATCGCATCACGCTTTCAAATTTGCCGCTGCTCCGTGGC
AAGCGAACGCGTTTTGCCTTGAAtaaagaggaaaatgatgaGCTGGCGGT
CATTGCCGCCCGGTCGGGGCTTTACGCGTCGGAGCTGCCTGACGTGTTCG
AGGGCCCTGATGACGACGCAGACTGGGAGGCGGCTTTTGCGTTCAAAGGT
TTTGAAgatgggggagatggaatggcagaggaagaggtcggCGGTCCCGA
GGCTCTTTTTGGTGAAGAaccggaggaggatgatgaggagtTCAGCATGA
GCTCCATCAACGCCTTCCGCAGCCCAGCTtacaaaaaagaaaagggctTG
AtggcggaagacgaggaggaggcggacgagggtTTTAAATACGGTGGCGA
GGCGTATTTTcccgaggacgacgaagctGATGACGCGATTTCTGGCACAT
TCACAAAGCAATACGATACGCAAATCCCACAGCTTAGCGAGGACGAGCTG
AAGGCCTTGATTCGAAAGGCGCAGGGTACGCGCCGGAACGTAACCGAAGA
AtgggctgaggaggaggcggaggagcgagagTACCTGACCGTGAGCATGG
TTCCGtccaagaggaagaacaCGGCATTGATGATGAAACAAGTGGTGCCA
ACTCAGTCTGATGCCATACTTGCCAAGCCACGCATGCCCATCTATTTTTC
TAAGAAGCTATCAGCTGTGCAGCAAGTGGAGCTCATGGAAGAATTGGAAA
GACTGGTCAACGACGACCCCTTAGCTCTTGTGAAATAAGCTGCTAAGCTG
CTCAGGAATGGTCTTCGAACATCTCGTCCGCCGATGGAGTTAGACAAAGT
GGATGGCGTGCTTTGTCGGGAGTGGAGAGGATATTCGCATGCGAAAGCGG
GGGTGCGACGGTCGCAGTACTGAGTAAGGCGCCGTTATGGGATGAGATGT
GCAACTGCATAACGAAAGGGAAAATAAGGGAGGAttcagggggaaaggaa
tatATGTCctgtcgggggaggagaacgcaCACATTCTTTATACATACGCA
TCTAGTATCGACGAACATCAATCCACACGAACACATTATACGGGTGCTTG
GATTCTACGAGCATAAAAATGTGAGCGAGCGCAGATGACATACAAAGGGG
GTGCTTGAGGTTCTGCTTGACGAAAGCGCATGCCAGACCTCATAGATTTA
AAGAAGAAAGCATCAGAAGACAGCGTTGCTATTTAAGTACCTAGCTTTTG
AGCCTCATGGCATCTAACATTTGACAGCATGCACTGTGGTCCGCTTATTC
TTCTCTTAAGACTTCTACATATTGTCTCTCACCTCCGGCTTTGAACAAGC
TCTGCA

Coding sequence (CDS) from alignment at CM002457.1:728668..731523+

>rna1476 ID=rna1476|Name=rna1476|organism=Nannochloropsis gaditana|type=CDS|length=1230bp|location=Sequence derived from alignment at CM002457.1:728668..731523+ (Nannochloropsis gaditana)
ATGTCTTCGACCTTCGTTTCAAGCCCGTCAGATCTCGCTGCAGTGGGTGA
CTCCGTGACTGTACGCGTGCTAAGTGTGGATGCGGACAAGCGCCAAATCG
CCCTCACTATGAAAACTGAGGCCGAGGCAAATGCTCCGCGTCCTACCAAA
CGCACATCGAAGAGGCGTCCAGCGGATCGGGACGATGCAAATCCatcaga
cgaggaggacgatcaAGGTGATGGCGATGCCTTGCGTGACGCACCAGTGG
GAGACAAGGACGTCAGCGCTTTCGAACATTATGACCCCAAGAAATTTCTT
AGCGGGACTGTTGCTTCGGTACAAGCTTATGGGGCCTTCATCCGGCTGGA
TGATGCCGACCTCGACGGTCTGCTGCCCACAGGAGACATGGACGGCAAGC
TGGAGTCTGGCCAGCGTGTGCAGGTGCGGATCACGGACGTTGACACAGAG
CGCAATCGCATCACGCTTTCAAATTTGCCGCTGCTCCGTGGCAAGCGAAC
GCGTTTTGCCTTGAAtaaagaggaaaatgatgaGCTGGCGGTCATTGCCG
CCCGGTCGGGGCTTTACGCGTCGGAGCTGCCTGACGTGTTCGAGGGCCCT
GATGACGACGCAGACTGGGAGGCGGCTTTTGCGTTCAAAGGTTTTGAAga
tgggggagatggaatggcagaggaagaggtcggCGGTCCCGAGGCTCTTT
TTGGTGAAGAaccggaggaggatgatgaggagtTCAGCATGAGCTCCATC
AACGCCTTCCGCAGCCCAGCTtacaaaaaagaaaagggctTGAtggcgga
agacgaggaggaggcggacgagggtTTTAAATACGGTGGCGAGGCGTATT
TTcccgaggacgacgaagctGATGACGCGATTTCTGGCACATTCACAAAG
CAATACGATACGCAAATCCCACAGCTTAGCGAGGACGAGCTGAAGGCCTT
GATTCGAAAGGCGCAGGGTACGCGCCGGAACGTAACCGAAGAAtgggctg
aggaggaggcggaggagcgagagTACCTGACCGTGAGCATGGTTCCGtcc
aagaggaagaacaCGGCATTGATGATGAAACAAGTGGTGCCAACTCAGTC
TGATGCCATACTTGCCAAGCCACGCATGCCCATCTATTTTTCTAAGAAGC
TATCAGCTGTGCAGCAAGTGGAGCTCATGGAAGAATTGGAAAGACTGGTC
AACGACGACCCCTTAGCTCTTGTGAAATAA

Synonyms

Publications