EWM29144.1, cds1473 (CDS) Nannochloropsis gaditana

Overview
NameEWM29144.1
Unique Namecds1473
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:729726..730955 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29144.1
Productrna binding s1 domain protein
Orig transcript idgnl|cribi|Naga_100007g107.6471.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:729726..730955 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR003029Rbsml_prot_S1_RNA-bd_dom
IPR012340NA-bd_OB-fold
IPR022967S1_dom
Homology
BLAST of EWM29144.1 vs. NCBI_GenBank
Match: gi|585111664|gb|EWM29144.1| (rna binding s1 domain protein [Nannochloropsis gaditana])

HSP 1 Score: 820.846 bits (2119), Expect = 0.000e+0
Identity = 409/409 (100.00%), Postives = 409/409 (100.00%), Query Frame = 0
Query:    1 MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGDMDGKLESGQRVQVRITDVDTERNRITLSNLPLLRGKRTRFALNKEENDELAVIAARSGLYASELPDVFEGPDDDADWEAAFAFKGFEDGGDGMAEEEVGGPEALFGEEPEEDDEEFSMSSINAFRSPAYKKEKGLMAEDEEEADEGFKYGGEAYFPEDDEADDAISGTFTKQYDTQIPQLSEDELKALIRKAQGTRRNVTEEWAEEEAEEREYLTVSMVPSKRKNTALMMKQVVPTQSDAILAKPRMPIYFSKKLSAVQQVELMEELERLVNDDPLALVK 409
            MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGDMDGKLESGQRVQVRITDVDTERNRITLSNLPLLRGKRTRFALNKEENDELAVIAARSGLYASELPDVFEGPDDDADWEAAFAFKGFEDGGDGMAEEEVGGPEALFGEEPEEDDEEFSMSSINAFRSPAYKKEKGLMAEDEEEADEGFKYGGEAYFPEDDEADDAISGTFTKQYDTQIPQLSEDELKALIRKAQGTRRNVTEEWAEEEAEEREYLTVSMVPSKRKNTALMMKQVVPTQSDAILAKPRMPIYFSKKLSAVQQVELMEELERLVNDDPLALVK
Sbjct:    1 MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGDMDGKLESGQRVQVRITDVDTERNRITLSNLPLLRGKRTRFALNKEENDELAVIAARSGLYASELPDVFEGPDDDADWEAAFAFKGFEDGGDGMAEEEVGGPEALFGEEPEEDDEEFSMSSINAFRSPAYKKEKGLMAEDEEEADEGFKYGGEAYFPEDDEADDAISGTFTKQYDTQIPQLSEDELKALIRKAQGTRRNVTEEWAEEEAEEREYLTVSMVPSKRKNTALMMKQVVPTQSDAILAKPRMPIYFSKKLSAVQQVELMEELERLVNDDPLALVK 409          
BLAST of EWM29144.1 vs. NCBI_GenBank
Match: gi|223995143|ref|XP_002287255.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976371|gb|EED94698.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 84.7297 bits (208), Expect = 2.447e-14
Identity = 62/176 (35.23%), Postives = 92/176 (52.27%), Query Frame = 0
Query:    1 MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKT-EAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADL--------DGLLP--------TGDMDGKLESGQRVQVRITDVDTERNRITLSNL 159
            +S  FV++  D+   G+ +TVR++SVD +K QIA+TM++ EAEA+A RPTKR  + RP  R  A+ + +        A     + DK       +D  KF+ G V S  A+GAF+R D A L        DGL+         T ++      G +V VR+  V+ E  RI+LS +
Sbjct:  176 LSDDFVANVEDVVKAGEKITVRIVSVDTEKNQIAVTMRSEEAEASAARPTKR--RERP-QRSGADQTSQ--------AASIKAISDKG------FDDSKFIDGEVVSTLAFGAFVRFDSAQLGEGLEGEVDGLVHISALAEGRTANVSDVAAVGDKVSVRVRSVEPEAGRISLSMI 334          
BLAST of EWM29144.1 vs. NCBI_GenBank
Match: gi|551564262|ref|XP_005768711.1| (hypothetical protein EMIHUDRAFT_436544 [Emiliania huxleyi CCMP1516] >gi|485619478|gb|EOD16282.1| hypothetical protein EMIHUDRAFT_436544 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 79.7221 bits (195), Expect = 7.299e-13
Identity = 66/170 (38.82%), Postives = 88/170 (51.76%), Query Frame = 0
Query:    1 MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGDM-DGKLES-------GQRVQVRITDVDTERNRITLSNLPLL 162
            M+ TFV   +D+ AVGD+VTVRV SVD  K Q+AL+ K   + NAP P  R  KR  A                            D+S F   D K+F +GTV S+Q++GAF+ L D  +DGLL   ++ +G +ES       GQ VQVR+   D +R RI LS  P +
Sbjct:  114 MADTFVKDANDMFAVGDAVTVRVKSVDLAKGQVALSNK---DPNAPPPPPRRQKREAA----------------------------DLSEFASADEKEFRTGTVRSIQSFGAFVNLKDG-VDGLLHISEIKEGGVESVAAELSEGQEVQVRVVSFDDKR-RIGLSMKPYV 250          
BLAST of EWM29144.1 vs. NCBI_GenBank
Match: gi|545705491|ref|XP_005705065.1| (30S ribosomal protein S1 [Galdieria sulphuraria] >gi|452821516|gb|EME28545.1| 30S ribosomal protein S1 [Galdieria sulphuraria])

HSP 1 Score: 78.9518 bits (193), Expect = 9.150e-13
Identity = 57/162 (35.19%), Postives = 84/162 (51.85%), Query Frame = 0
Query:    1 MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHY-DPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGDMDGKLESGQRVQVRITDVDTERNRITLSNLPL 161
            +S  F++ P+++ +VG +V VRV+ +D +KRQ AL+MK+        P KR + R   D            Q D + LR      K++  F    +PK+FL+G V S+   GAF+       DGLL   +M   L+ G  VQVRIT ++  RN + LS  PL
Sbjct:  135 ISENFLTDPAEMLSVGQAVQVRVIKLDPEKRQFALSMKS--------PRKRENSRSGRDGSRRRDFSRNYSQRD-EELR------KELKEFSKTANPKEFLNGRVVSITNLGAFVDFGGPK-DGLLFKSEMSRDLQIGDEVQVRITRINLARNYLNLSMKPL 280          
BLAST of EWM29144.1 vs. NCBI_GenBank
Match: gi|545701882|ref|XP_005703273.1| (30S ribosomal protein S1 [Galdieria sulphuraria] >gi|452819699|gb|EME26753.1| 30S ribosomal protein S1 [Galdieria sulphuraria])

HSP 1 Score: 72.7886 bits (177), Expect = 7.675e-11
Identity = 56/161 (34.78%), Postives = 82/161 (50.93%), Query Frame = 0
Query:    1 MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGDMDGKLESGQRVQVRITDVDTERNRITLSNLPL 161
            MS+ FV+ P+++ ++G  VTVRV  +D +K Q +LTMKT+     PR      +RR         +DE ++    +ALR         S  E  D  +F  G V +V  +GAF+ +D    DGL+   DM   LE    +QVR+  +D  R  ITLS  P+
Sbjct:  133 MSNRFVNHPNEVVSIGSQVTVRVYKIDVEKDQFSLTMKTQ----EPR------RRR---------NDEPENV--VEALR---------SFAEQVDRHEFRKGRVVNVTDFGAFVDIDGPK-DGLVFRADMTDDLEVDDEIQVRVKKIDLSRKFITLSMKPI 262          
BLAST of EWM29144.1 vs. NCBI_GenBank
Match: gi|299472226|emb|CBN77196.1| (30S ribosomal protein S1 [Ectocarpus siliculosus])

HSP 1 Score: 74.7146 bits (182), Expect = 9.750e-11
Identity = 51/163 (31.29%), Postives = 79/163 (48.47%), Query Frame = 0
Query:    6 VSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGDMD-GKLES-------GQRVQVRITDVDTERNRITLSNLP 160
            VS+  D   +G  V VRV+ VD D  ++ L+M+ E   N+PR  +                                 G KDVS     DP +F+ G V S+  YGAF+ + + ++DGL+   +M  G+++S       GQ VQVRI+D++T+ N + LS +P
Sbjct:  550 VSNVEDHLQIGQEVQVRVIEVDVDNCRLGLSMR-EPRQNSPRGAR---------------------------------GKKDVSVLLGRDPDEFIPGRVVSIVPYGAFVNI-EGNIDGLVHISEMAIGRVDSVEDVCEMGQEVQVRISDINTDNNTVNLSMVP 677          

HSP 2 Score: 63.1586 bits (152), Expect = 4.182e-7
Identity = 39/100 (39.00%), Postives = 54/100 (54.00%), Query Frame = 0
Query:   73 GDGDALRDAPVG-DKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGDM-----------DGKLESGQRVQVRITDVDTERNRITLSNLP 160
            G G+A R APV   KDVS     DP +F  GTV++V  YG F+ ++   +DGLL    M               E GQ V++RI +V+T  N+++LS LP
Sbjct:  289 GQGEAPRSAPVAATKDVSHLAGSDPTEFRKGTVSAVADYGLFVNIEG--VDGLLHVSKMSTDRSITSENIHSHYEEGQEVEIRIMEVNTANNKMSLSMLP 386          
BLAST of EWM29144.1 vs. NCBI_GenBank
Match: gi|551665963|ref|XP_005835743.1| (hypothetical protein GUITHDRAFT_105392 [Guillardia theta CCMP2712] >gi|428179894|gb|EKX48763.1| hypothetical protein GUITHDRAFT_105392 [Guillardia theta CCMP2712])

HSP 1 Score: 72.4034 bits (176), Expect = 1.402e-10
Identity = 50/161 (31.06%), Postives = 79/161 (49.07%), Query Frame = 0
Query:    5 FVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGD--------MDGKLESGQRVQVRITDVDTERNRITLS 157
            FVS    +  VGD V VR+  ++AD  +++L+M++E   NAP   +R  +R                   G    + P        F+++D K+F+ GTVAS+  YGAF+ + +  +DGL+            +D  L  GQ V VRI + D +R R++LS
Sbjct:  135 FVSDIESVVKVGDEVQVRITEINADINKVSLSMRSE---NAPSRGERNERR-----------------SGGGGRSELP------EKFKNFDDKEFIKGTVASLMEYGAFVTIGEG-VDGLVHISQISEERDTKIDKVLTVGQEVNVRIINFDQKRKRLSLS 268          
BLAST of EWM29144.1 vs. NCBI_GenBank
Match: gi|676396913|ref|XP_009041734.1| (hypothetical protein AURANDRAFT_72706 [Aureococcus anophagefferens] >gi|323447671|gb|EGB03584.1| hypothetical protein AURANDRAFT_72706 [Aureococcus anophagefferens])

HSP 1 Score: 70.8626 bits (172), Expect = 6.434e-10
Identity = 50/165 (30.30%), Postives = 83/165 (50.30%), Query Frame = 0
Query:    1 MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTG--------DMDGKLESGQRVQVRITDVDTERNRITLS 157
            +S+++V   + +   GD VTVR+L +D+ K+Q++L+MK E  A AP P KR                       G   R    G +++  ++  DP +F+SGTV +V  +GAF+ +    +DGL+           D+  +L  G  V+VRI DVD ++  + L+
Sbjct:  100 LSASYVDDVASVVKEGDDVTVRILKIDSGKKQLSLSMKPEG-AEAP-PKKR-----------------------GGGGRQKKAGAEELRKYQDADPAEFISGTVRTVLEWGAFVNIAPG-VDGLVHISRVSDSRVEDLQAELSVGDEVKVRIIDVDLDKATLGLA 238          
BLAST of EWM29144.1 vs. NCBI_GenBank
Match: gi|397625080|gb|EJK67660.1| (hypothetical protein THAOC_11280 [Thalassiosira oceanica])

HSP 1 Score: 70.8626 bits (172), Expect = 9.364e-10
Identity = 56/175 (32.00%), Postives = 91/175 (52.00%), Query Frame = 0
Query:    1 MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKT-EAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDA-------DLDGLLPTGDM-DGKLES-------GQRVQVRITDVDTERNRITLSNL 159
            +S  FV++  D+   GD ++VR++SVD +K QIA+TM++ EAEA A         +R  DR   +  D+       +AL +           + +D +KF+ G V S   +GAF+R D A       ++DGL+    + +G++ +       G +VQVRI  VD E  R++LS +
Sbjct:  181 LSDDFVANVEDVVKKGDEISVRIMSVDTEKNQIAVTMRSPEAEAKAAEGGSTGRPQRRRDRPQRSNGDKAAQAATINALVE-----------KGFDEEKFVEGEVVSSLDFGAFVRFDTAQVGEFEGEVDGLVHISALAEGRVNTVSDIVAVGDKVQVRIRTVDAEAGRVSLSMI 344          
BLAST of EWM29144.1 vs. NCBI_GenBank
Match: gi|656269512|ref|WP_029215234.1| (hypothetical protein [bacterium JKG1])

HSP 1 Score: 70.0922 bits (170), Expect = 2.591e-9
Identity = 53/174 (30.46%), Postives = 82/174 (47.13%), Query Frame = 0
Query:    1 MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGDM-DGKLES-------GQRVQVRITDVDTERNRITLSNLPLLRGKR 166
            MS T V SP+DL  +GD VTV V SVD + R+I+LTM+   + N P+P +    R+P                           + D+       P   + GTV+S+  +GAF+ +     DGL+   ++ +G++E        G+R   R+ + D E  RI+LS    LR +R
Sbjct:  237 MSDTRVESPTDLVQIGDPVTVWVKSVDPEARRISLTMR---DPNRPKPQRERRPRKP---------------------------EVDLEKLRQLKPGDTVEGTVSSLSPFGAFVDI-GVGKDGLVHISELSEGRIEKPEDAVQVGERYTFRVLEADPEGKRISLSLRRALRSQR 379          
The following BLAST results are available for this feature:
BLAST of EWM29144.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111664|gb|EWM29144.1|0.000e+0100.00rna binding s1 domain protein [Nannochloropsis gad... [more]
gi|223995143|ref|XP_002287255.1|2.447e-1435.23predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|551564262|ref|XP_005768711.1|7.299e-1338.82hypothetical protein EMIHUDRAFT_436544 [Emiliania ... [more]
gi|545705491|ref|XP_005705065.1|9.150e-1335.1930S ribosomal protein S1 [Galdieria sulphuraria] >... [more]
gi|545701882|ref|XP_005703273.1|7.675e-1134.7830S ribosomal protein S1 [Galdieria sulphuraria] >... [more]
gi|299472226|emb|CBN77196.1|9.750e-1131.2930S ribosomal protein S1 [Ectocarpus siliculosus][more]
gi|551665963|ref|XP_005835743.1|1.402e-1031.06hypothetical protein GUITHDRAFT_105392 [Guillardia... [more]
gi|676396913|ref|XP_009041734.1|6.434e-1030.30hypothetical protein AURANDRAFT_72706 [Aureococcus... [more]
gi|397625080|gb|EJK67660.1|9.364e-1032.00hypothetical protein THAOC_11280 [Thalassiosira oc... [more]
gi|656269512|ref|WP_029215234.1|2.591e-930.46hypothetical protein [bacterium JKG1][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1476rna1476Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications