EWM29144.1, cds1473 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29144.1 vs. NCBI_GenBank
Match: gi|585111664|gb|EWM29144.1| (rna binding s1 domain protein [Nannochloropsis gaditana]) HSP 1 Score: 820.846 bits (2119), Expect = 0.000e+0 Identity = 409/409 (100.00%), Postives = 409/409 (100.00%), Query Frame = 0
Query: 1 MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGDMDGKLESGQRVQVRITDVDTERNRITLSNLPLLRGKRTRFALNKEENDELAVIAARSGLYASELPDVFEGPDDDADWEAAFAFKGFEDGGDGMAEEEVGGPEALFGEEPEEDDEEFSMSSINAFRSPAYKKEKGLMAEDEEEADEGFKYGGEAYFPEDDEADDAISGTFTKQYDTQIPQLSEDELKALIRKAQGTRRNVTEEWAEEEAEEREYLTVSMVPSKRKNTALMMKQVVPTQSDAILAKPRMPIYFSKKLSAVQQVELMEELERLVNDDPLALVK 409
MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGDMDGKLESGQRVQVRITDVDTERNRITLSNLPLLRGKRTRFALNKEENDELAVIAARSGLYASELPDVFEGPDDDADWEAAFAFKGFEDGGDGMAEEEVGGPEALFGEEPEEDDEEFSMSSINAFRSPAYKKEKGLMAEDEEEADEGFKYGGEAYFPEDDEADDAISGTFTKQYDTQIPQLSEDELKALIRKAQGTRRNVTEEWAEEEAEEREYLTVSMVPSKRKNTALMMKQVVPTQSDAILAKPRMPIYFSKKLSAVQQVELMEELERLVNDDPLALVK
Sbjct: 1 MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGDMDGKLESGQRVQVRITDVDTERNRITLSNLPLLRGKRTRFALNKEENDELAVIAARSGLYASELPDVFEGPDDDADWEAAFAFKGFEDGGDGMAEEEVGGPEALFGEEPEEDDEEFSMSSINAFRSPAYKKEKGLMAEDEEEADEGFKYGGEAYFPEDDEADDAISGTFTKQYDTQIPQLSEDELKALIRKAQGTRRNVTEEWAEEEAEEREYLTVSMVPSKRKNTALMMKQVVPTQSDAILAKPRMPIYFSKKLSAVQQVELMEELERLVNDDPLALVK 409
BLAST of EWM29144.1 vs. NCBI_GenBank
Match: gi|223995143|ref|XP_002287255.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976371|gb|EED94698.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 84.7297 bits (208), Expect = 2.447e-14 Identity = 62/176 (35.23%), Postives = 92/176 (52.27%), Query Frame = 0
Query: 1 MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKT-EAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADL--------DGLLP--------TGDMDGKLESGQRVQVRITDVDTERNRITLSNL 159
+S FV++ D+ G+ +TVR++SVD +K QIA+TM++ EAEA+A RPTKR + RP R A+ + + A + DK +D KF+ G V S A+GAF+R D A L DGL+ T ++ G +V VR+ V+ E RI+LS +
Sbjct: 176 LSDDFVANVEDVVKAGEKITVRIVSVDTEKNQIAVTMRSEEAEASAARPTKR--RERP-QRSGADQTSQ--------AASIKAISDKG------FDDSKFIDGEVVSTLAFGAFVRFDSAQLGEGLEGEVDGLVHISALAEGRTANVSDVAAVGDKVSVRVRSVEPEAGRISLSMI 334
BLAST of EWM29144.1 vs. NCBI_GenBank
Match: gi|551564262|ref|XP_005768711.1| (hypothetical protein EMIHUDRAFT_436544 [Emiliania huxleyi CCMP1516] >gi|485619478|gb|EOD16282.1| hypothetical protein EMIHUDRAFT_436544 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 79.7221 bits (195), Expect = 7.299e-13 Identity = 66/170 (38.82%), Postives = 88/170 (51.76%), Query Frame = 0
Query: 1 MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGDM-DGKLES-------GQRVQVRITDVDTERNRITLSNLPLL 162
M+ TFV +D+ AVGD+VTVRV SVD K Q+AL+ K + NAP P R KR A D+S F D K+F +GTV S+Q++GAF+ L D +DGLL ++ +G +ES GQ VQVR+ D +R RI LS P +
Sbjct: 114 MADTFVKDANDMFAVGDAVTVRVKSVDLAKGQVALSNK---DPNAPPPPPRRQKREAA----------------------------DLSEFASADEKEFRTGTVRSIQSFGAFVNLKDG-VDGLLHISEIKEGGVESVAAELSEGQEVQVRVVSFDDKR-RIGLSMKPYV 250
BLAST of EWM29144.1 vs. NCBI_GenBank
Match: gi|545705491|ref|XP_005705065.1| (30S ribosomal protein S1 [Galdieria sulphuraria] >gi|452821516|gb|EME28545.1| 30S ribosomal protein S1 [Galdieria sulphuraria]) HSP 1 Score: 78.9518 bits (193), Expect = 9.150e-13 Identity = 57/162 (35.19%), Postives = 84/162 (51.85%), Query Frame = 0
Query: 1 MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHY-DPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGDMDGKLESGQRVQVRITDVDTERNRITLSNLPL 161
+S F++ P+++ +VG +V VRV+ +D +KRQ AL+MK+ P KR + R D Q D + LR K++ F +PK+FL+G V S+ GAF+ DGLL +M L+ G VQVRIT ++ RN + LS PL
Sbjct: 135 ISENFLTDPAEMLSVGQAVQVRVIKLDPEKRQFALSMKS--------PRKRENSRSGRDGSRRRDFSRNYSQRD-EELR------KELKEFSKTANPKEFLNGRVVSITNLGAFVDFGGPK-DGLLFKSEMSRDLQIGDEVQVRITRINLARNYLNLSMKPL 280
BLAST of EWM29144.1 vs. NCBI_GenBank
Match: gi|545701882|ref|XP_005703273.1| (30S ribosomal protein S1 [Galdieria sulphuraria] >gi|452819699|gb|EME26753.1| 30S ribosomal protein S1 [Galdieria sulphuraria]) HSP 1 Score: 72.7886 bits (177), Expect = 7.675e-11 Identity = 56/161 (34.78%), Postives = 82/161 (50.93%), Query Frame = 0
Query: 1 MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGDMDGKLESGQRVQVRITDVDTERNRITLSNLPL 161
MS+ FV+ P+++ ++G VTVRV +D +K Q +LTMKT+ PR +RR +DE ++ +ALR S E D +F G V +V +GAF+ +D DGL+ DM LE +QVR+ +D R ITLS P+
Sbjct: 133 MSNRFVNHPNEVVSIGSQVTVRVYKIDVEKDQFSLTMKTQ----EPR------RRR---------NDEPENV--VEALR---------SFAEQVDRHEFRKGRVVNVTDFGAFVDIDGPK-DGLVFRADMTDDLEVDDEIQVRVKKIDLSRKFITLSMKPI 262
BLAST of EWM29144.1 vs. NCBI_GenBank
Match: gi|299472226|emb|CBN77196.1| (30S ribosomal protein S1 [Ectocarpus siliculosus]) HSP 1 Score: 74.7146 bits (182), Expect = 9.750e-11 Identity = 51/163 (31.29%), Postives = 79/163 (48.47%), Query Frame = 0
Query: 6 VSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGDMD-GKLES-------GQRVQVRITDVDTERNRITLSNLP 160
VS+ D +G V VRV+ VD D ++ L+M+ E N+PR + G KDVS DP +F+ G V S+ YGAF+ + + ++DGL+ +M G+++S GQ VQVRI+D++T+ N + LS +P
Sbjct: 550 VSNVEDHLQIGQEVQVRVIEVDVDNCRLGLSMR-EPRQNSPRGAR---------------------------------GKKDVSVLLGRDPDEFIPGRVVSIVPYGAFVNI-EGNIDGLVHISEMAIGRVDSVEDVCEMGQEVQVRISDINTDNNTVNLSMVP 677 HSP 2 Score: 63.1586 bits (152), Expect = 4.182e-7 Identity = 39/100 (39.00%), Postives = 54/100 (54.00%), Query Frame = 0
Query: 73 GDGDALRDAPVG-DKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGDM-----------DGKLESGQRVQVRITDVDTERNRITLSNLP 160
G G+A R APV KDVS DP +F GTV++V YG F+ ++ +DGLL M E GQ V++RI +V+T N+++LS LP
Sbjct: 289 GQGEAPRSAPVAATKDVSHLAGSDPTEFRKGTVSAVADYGLFVNIEG--VDGLLHVSKMSTDRSITSENIHSHYEEGQEVEIRIMEVNTANNKMSLSMLP 386
BLAST of EWM29144.1 vs. NCBI_GenBank
Match: gi|551665963|ref|XP_005835743.1| (hypothetical protein GUITHDRAFT_105392 [Guillardia theta CCMP2712] >gi|428179894|gb|EKX48763.1| hypothetical protein GUITHDRAFT_105392 [Guillardia theta CCMP2712]) HSP 1 Score: 72.4034 bits (176), Expect = 1.402e-10 Identity = 50/161 (31.06%), Postives = 79/161 (49.07%), Query Frame = 0
Query: 5 FVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGD--------MDGKLESGQRVQVRITDVDTERNRITLS 157
FVS + VGD V VR+ ++AD +++L+M++E NAP +R +R G + P F+++D K+F+ GTVAS+ YGAF+ + + +DGL+ +D L GQ V VRI + D +R R++LS
Sbjct: 135 FVSDIESVVKVGDEVQVRITEINADINKVSLSMRSE---NAPSRGERNERR-----------------SGGGGRSELP------EKFKNFDDKEFIKGTVASLMEYGAFVTIGEG-VDGLVHISQISEERDTKIDKVLTVGQEVNVRIINFDQKRKRLSLS 268
BLAST of EWM29144.1 vs. NCBI_GenBank
Match: gi|676396913|ref|XP_009041734.1| (hypothetical protein AURANDRAFT_72706 [Aureococcus anophagefferens] >gi|323447671|gb|EGB03584.1| hypothetical protein AURANDRAFT_72706 [Aureococcus anophagefferens]) HSP 1 Score: 70.8626 bits (172), Expect = 6.434e-10 Identity = 50/165 (30.30%), Postives = 83/165 (50.30%), Query Frame = 0
Query: 1 MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTG--------DMDGKLESGQRVQVRITDVDTERNRITLS 157
+S+++V + + GD VTVR+L +D+ K+Q++L+MK E A AP P KR G R G +++ ++ DP +F+SGTV +V +GAF+ + +DGL+ D+ +L G V+VRI DVD ++ + L+
Sbjct: 100 LSASYVDDVASVVKEGDDVTVRILKIDSGKKQLSLSMKPEG-AEAP-PKKR-----------------------GGGGRQKKAGAEELRKYQDADPAEFISGTVRTVLEWGAFVNIAPG-VDGLVHISRVSDSRVEDLQAELSVGDEVKVRIIDVDLDKATLGLA 238
BLAST of EWM29144.1 vs. NCBI_GenBank
Match: gi|397625080|gb|EJK67660.1| (hypothetical protein THAOC_11280 [Thalassiosira oceanica]) HSP 1 Score: 70.8626 bits (172), Expect = 9.364e-10 Identity = 56/175 (32.00%), Postives = 91/175 (52.00%), Query Frame = 0
Query: 1 MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKT-EAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDA-------DLDGLLPTGDM-DGKLES-------GQRVQVRITDVDTERNRITLSNL 159
+S FV++ D+ GD ++VR++SVD +K QIA+TM++ EAEA A +R DR + D+ +AL + + +D +KF+ G V S +GAF+R D A ++DGL+ + +G++ + G +VQVRI VD E R++LS +
Sbjct: 181 LSDDFVANVEDVVKKGDEISVRIMSVDTEKNQIAVTMRSPEAEAKAAEGGSTGRPQRRRDRPQRSNGDKAAQAATINALVE-----------KGFDEEKFVEGEVVSSLDFGAFVRFDTAQVGEFEGEVDGLVHISALAEGRVNTVSDIVAVGDKVQVRIRTVDAEAGRVSLSMI 344
BLAST of EWM29144.1 vs. NCBI_GenBank
Match: gi|656269512|ref|WP_029215234.1| (hypothetical protein [bacterium JKG1]) HSP 1 Score: 70.0922 bits (170), Expect = 2.591e-9 Identity = 53/174 (30.46%), Postives = 82/174 (47.13%), Query Frame = 0
Query: 1 MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSDEEDDQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGDM-DGKLES-------GQRVQVRITDVDTERNRITLSNLPLLRGKR 166
MS T V SP+DL +GD VTV V SVD + R+I+LTM+ + N P+P + R+P + D+ P + GTV+S+ +GAF+ + DGL+ ++ +G++E G+R R+ + D E RI+LS LR +R
Sbjct: 237 MSDTRVESPTDLVQIGDPVTVWVKSVDPEARRISLTMR---DPNRPKPQRERRPRKP---------------------------EVDLEKLRQLKPGDTVEGTVSSLSPFGAFVDI-GVGKDGLVHISELSEGRIEKPEDAVQVGERYTFRVLEADPEGKRISLSLRRALRSQR 379 The following BLAST results are available for this feature:
BLAST of EWM29144.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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