rna1469, rna1469 (mRNA) Nannochloropsis gaditana

Overview
Namerna1469
Unique Namerna1469
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2814
Alignment locationCM002457.1:713802..715383 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100007g112.6434.mrna
Orig protein idgnl|cribi|Naga_100007g112.6434
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:713802..715383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g112gene1419Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1469rna1469-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29107.1cds1466Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1469 ID=rna1469|Name=rna1469|organism=Nannochloropsis gaditana|type=mRNA|length=2814bp
ATTGCACAACAAAAGCTTGTGGGGGAATTCGGGGCTTTCCTGTGTTCTTC
CCTACTAGTAATATTCTCGTTGGCTCATGCACCGGGAGGGCCCGACAGAG
CGGCCCCTCGCACACGCGACATTAAATAATCCTCTCCCTCTTTCATCGCA
AATTCGACAGGATATGATCGCTTGACAGTATTCAGTAAAAAAGAAGTTAA
GCATGCGAACCTCCCGCCCCAGAGAGTGCGATAACTACTGAGTAACGAGA
CATAGCACCTTCCCGCGAATGCATTATTCGACTATGCGGCCGATCTTCTT
GTGGATGAAAAAAATATACGCTAGGCCTTTGACTAAGCCATTGACACCAA
TCAGAAGCGCTACTGTTGAGTGTTCTGTCGGCTTTTCTACCTGCTCCATG
ACCCCCGAAACTCGTCAACTCGCCGAGGGTGTCCTTCGAGGAAATCGGTT
AGCTTTAAGTAGAGCGATTACTTTGATAGAGTCCACGAAGGAGAGTCATC
GACTCGATGCTGAGGCATTGTTGGACCACGTTGTTTACGAGCGGAGCCGT
CGAGTCCGAGAAAAGGGACGACTCAAACCGGGGAATTCCACGAGCAACGC
AGCCTGTGTCGCTGATGAGGGTAGAATCGGCACGTCTGAAAATGTTCGAC
CCTTGCGAGTCGGAATTGCTGGGCCGCCAGGTGCTGGGAAATCGACTTTT
ATAGAGGCCCTAGGCAAATACCTGACGGATAGTAAGAAATTGCGTGTCGC
TGTCATCGCAGTGGATCCGTCATCAAGCCGCAGCGGGGGTTCCATTCTGG
GAGATAAAACTCGTATGTACGAGTTGGCGAAAGACCCGAAGGCATTTGTG
CGTGCTTGCCCAACCAGTGGGGTTCTGGGTGGCGTGGCGCGCTACACGAA
TGATGTAGTCCTGCTTTGTCAAGCCGCATCTTTTGACATAGTTTTCATTG
AGAGCGTGGGGCTCGGCCAATCCGAAACTATAATCGACCAGGCATCGGAC
ATGCTTCTTCTCCTTGTTCCTCCTGCGGGCGGGGACGAATTGCAGGGCGT
GAAGAAGGGAATCATGGAGGTTGCGGACGTCATAGTCGTTAACAAAGCGG
ACGGCCATCTTCTCACGGCTGCTCAGCACACAGCTGCAGCGTATCAGCAC
GCCCTTTGCTTTCAACGGCGCAAATGGGACGCTTGGATGCCGAGTGTGAC
CCTCTGCTCGGCTTTGGAGCGTCATCGCATCGCAGACGTATGGGAGCAGG
TGTGTTCATGTAGTGACGTTTTCAGGCGGTCCGGATATCTCCGCTTAAAG
CGACAGAATCAGGATAAATATTGGGTCTGGAATAGTTTAGAGGACATTCT
CGTGCGACGAGCGAGAACATCCTCGAAAATAAAAGCCGGTGTGGAGCGGA
TGGAAAAAGAATTGGGGAAAGGGACCCTGACCCCCCGATCCGCAGCCGAG
ATCCTTCTCGCGGATTTCTTCGAAGAGCAGAAGTCTCCGACGAAAAGTAT
GGCGCCGTTCCAACAGTCAACATCATGCTTTCGTCCATCTTCTTCTGATT
AATATCTTACGTCCCATATTCAAGTACGATTTGCGCCGCTAAACTCACGC
AAAAAATTCAAGTAATGATTGTCATCTATTTTGCGGCCGTGACTAACTTC
AGCTCTTGTCGCCCCAGATCTGGTGTTTCTAGAACACCGAGAAAACTGGA
TTTACTCATCAAACTCTCTGAGCTCCTTCGATCCGATCCACTGAAAAACA
CCACTCTTCTTTGCTCCACTTCTTCCTTACAGAAGATCATCATCGCTGTA
GCAGGCGAAGGGCGGGTCACCTGGCAGCATGCCCGTGTCTCGGTATGTGC
CGGCGTAGCGCTCATTTGCGCCCCTTTCGTCATGAAACCAATTCGTTTCT
TCAATGCTCTGCAGCACATCTTCTCCCTCCACTGCGTCTTCACGCAGTCC
TGAAGTAAATTCAACCGTGGCTAAACTACCATCTTTGCTACAACGAATCG
CCCGTGATCTCTTGTCATTGTCTTTTACCCCCGGACTCCCAGCTCCCCCC
TGCTGCGTATTAATGTCGTCTTCCTTGCCATTGCTGGCATGAGTGGGAGC
CAAGCCTTTCTGTTCGCTGGTTTGTTCTGAGAAGGGACTTGGCGTCTCGC
CAAAGGGAGCCCGTTCCGGAGAACTCCCTCCTATGAGTACGTCGGATACC
ACGGCTGAAGGCGATGCTGCAGATGAAGATGGCATAGATGGAACAATAAT
TGTGCCATGCGGATCAAAGTCGTGCAGGCGCCGCCGCCATGCACGCACCA
GGCCATTGAAACGCTTGGTACTGATTCGGGCATGAATGTCCGGTGTTCTT
GGATCTGTACGTCGTCGGAGTTCCTTTGGAATTATCTCCTTATAACGGTC
GTATCCCAAGGTATTCTTGCCATAGTCGATCTGTTTCTGTCGCTGCCGCA
ATCGATGAGGGTCAGTCTCCGCCTCGCCTTGTCCTGACACTCCCGCCTGT
GGTGTTATGGTATTCCTTCGGTCTCTCAAGGCTGTACTGTTGACCTCAGG
GGTTGTCCCTATTAAGCAACTGGGTAGGCGTGGCTTTGTCTTCGTTGAAC
GGCAATCATCAGCCTCATAACGAAATCTCTTGCTCGTGGGGCGCTTTAAT
AAAGACGAGAAAAAAGGGTTAGAGAAAATAAAGCAAGGTAACGTGTCCGA
GGAGCAGTCTTCCTGTCCTTTCCGTACCTGCCGAAAGCTGTCCATTTCTT
TGCGATAATAGTGCACTTTCCCTAGCCTTTTGTAGGTGTGGGGAGTGATG
TGACTGCTTCGACC
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protein sequence of rna1469

>rna1469-protein ID=rna1469-protein|Name=rna1469|organism=Nannochloropsis gaditana|type=polypeptide|length=323bp
MFDKRTGRSSHITPHTYKRLGKVHYYRKEMDSFRQRPTSKRFRYEADDCR
STKTKPRLPSCLIGTTPEVNSTALRDRRNTITPQAGVSGQGEAETDPHRL
RQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGL
VRAWRRRLHDFDPHGTIIVPSMPSSSAASPSAVVSDVLIGGSSPERAPFG
ETPSPFSEQTSEQKGLAPTHASNGKEDDINTQQGGAGSPGVKDNDKRSRA
IRCSKDGSLATVEFTSGLREDAVEGEDVLQSIEETNWFHDERGANERYAG
TYRDTGMLPGDPPFACYSDDDLL
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mRNA from alignment at CM002457.1:713802..715383-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1469 ID=rna1469|Name=rna1469|organism=Nannochloropsis gaditana|type=mRNA|length=1582bp|location=Sequence derived from alignment at CM002457.1:713802..715383- (Nannochloropsis gaditana)
ATGTTTGACAAACGTACTGGTCGAAGCAGTCACATCACTCCCCACACCTA CAAAAGGCTAGGGAAAGTGCACTATTATCGCAAAGAAATGGACAGCTTTC GGCAGGTACGGAAAGGACAGGAAGACTGCTCCTCGGACACGTTACCTTGC TTTATTTTCTCTAACCCTTTTTTCTCGTCTTTATTAAAGCGCCCCACGAG CAAGAGATTTCGTTATGAGGCTGATGATTGCCGTTCAACGAAGACAAAGC CACGCCTACCCAGTTGCTTAATAGGGACAACCCCTGAGGTCAACAGTACA GCCTTGAGAGACCGAAGGAATACCATAACACCACAGGCGGGAGTGTCAGG ACAAGGCGAGGCGGAGACTGACCCTCATCGATTGCGGCAGCGACAGAAAC AGATCGACTATGGCAAGAATACCTTGGGATACGACCGTTATAAGGAGATA ATTCCAAAGGAACTCCGACGACGTACAGATCCAAGAACACCGGACATTCA TGCCCGAATCAGTACCAAGCGTTTCAATGGCCTGGTGCGTGCATGGCGGC GGCGCCTGCACGACTTTGATCCGCATGGCACAATTATTGTTCCATCTATG CCATCTTCATCTGCAGCATCGCCTTCAGCCGTGGTATCCGACGTACTCAT AGGAGGGAGTTCTCCGGAACGGGCTCCCTTTGGCGAGACGCCAAGTCCCT TCTCAGAACAAACCAGCGAACAGAAAGGCTTGGCTCCCACTCATGCCAGC AATGGCAAGGAAGACGACATTAATACGCAGCAGGGGGGAGCTGGGAGTCC GGGGGTAAAAGACAATGACAAGAGATCACGGGCGATTCGTTGTAGCAAAG ATGGTAGTTTAGCCACGGTTGAATTTACTTCAGGACTGCGTGAAGACGCA GTGGAGGGAGAAGATGTGCTGCAGAGCATTGAAGAAACGAATTGGTTTCA TGACGAAAGGGGCGCAAATGAGCGCTACGCCGGCACATACCGAGACACGG GCATGCTGCCAGGTGACCCGCCCTTCGCCTGCTACAGCGATGATGATCTT CTGTAAGGAAGAAGTGGAGCAAAGAAGAGTGGTGTTTTTCAGTGGATCGG ATCGAAGGAGCTCAGAGAGTTTGATGAGTAAATCCAGTTTTCTCGGTGTT CTAGAAACACCAGATCTGGGGCGACAAGAGCTGAAGTTAGTCACGGCCGC AAAATAGATGACAATCATTACTTGAATTTTTTGCGTGAGTTTAGCGGCGC AAATCGTACTTGAATATGGGACGTAAGATATTAATCAGAAGAAGATGGAC GAAAGCATGATGTTGACTGTTGGAACGGCGCCATACTTTTCGTCGGAGAC TTCTGCTCTTCGAAGAAATCCGCGAGAAGGATCTCGGCTGCGGATCGGGG GGTCAGGGTCCCTTTCCCCAATTCTTTTTCCATCCGCTCCACACCGGCTT TTATTTTCGAGGATGTTCTCGCTCGTCGCACGAGAATGTCCTCTAAACTA TTCCAGACCCAATATTTATCCTGATTCTGTCGCTTTAAGCGGAGATATCC GGACCGCCTGAAAACGTCACTACATGAACACA
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Coding sequence (CDS) from alignment at CM002457.1:713802..715383-

>rna1469 ID=rna1469|Name=rna1469|organism=Nannochloropsis gaditana|type=CDS|length=1944bp|location=Sequence derived from alignment at CM002457.1:713802..715383- (Nannochloropsis gaditana)
CGCCCCACGAGCAAGAGATTTCGTTATGAGGCTGATGATTGCCGTTCAAC
GAAGACAAAGCCACGCCTACCCAGTTGCTTAATAGGGACAACCCCTGAGG
TCAACAGTACAGCCTTGAGAGACCGAAGGAATACCATAACACCACAGGCG
GGAGTGTCAGGACAAGGCGAGGCGGAGACTGACCCTCATCGATTGCGGCA
GCGACAGAAACAGATCGACTATGGCAAGAATACCTTGGGATACGACCGTT
ATAAGGAGATAATTCCAAAGGAACTCCGACGACGTACAGATCCAAGAACA
CCGGACATTCATGCCCGAATCAGTACCAAGCGTTTCAATGGCCTGGTGCG
TGCATGGCGGCGGCGCCTGCACGACTTTGATCCGCATGGCACAATTATTG
TTCCATCTATGCCATCTTCATCTGCAGCATCGCCTTCAGCCGTGGTATCC
GACGTACTCATAGGAGGGAGTTCTCCGGAACGGGCTCCCTTTGGCGAGAC
GCCAAGTCCCTTCTCAGAACAAACCAGCGAACAGAAAGGCTTGGCTCCCA
CTCATGCCAGCAATGGCAAGGAAGACGACATTAATACGCAGCAGGGGGGA
GCTGGGAGTCCGGGGGTAAAAGACAATGACAAGAGATCACGGGCGATTCG
TTGTAGCAAAGATGGTAGTTTAGCCACGGTTGAATTTACTTCAGGACTGC
GTGAAGACGCAGTGGAGGGAGAAGATGTGCTGCAGAGCATTGAAGAAACG
AATTGGTTTCATGACGAAAGGGGCGCAAATGAGCGCTACGCCGGCACATA
CCGAGACACGGGCATGCTGCCAGGTGACCCGCCCTTCGCCTGCTACAGCG
ATGATGATCTTCTGTAAATGTTTGACAAACGTACTGGTCGAAGCAGTCAC
ATCACTCCCCACACCTACAAAAGGCTAGGGAAAGTGCACTATTATCGCAA
AGAAATGGACAGCTTTCGGCAGCGCCCCACGAGCAAGAGATTTCGTTATG
AGGCTGATGATTGCCGTTCAACGAAGACAAAGCCACGCCTACCCAGTTGC
TTAATAGGGACAACCCCTGAGGTCAACAGTACAGCCTTGAGAGACCGAAG
GAATACCATAACACCACAGGCGGGAGTGTCAGGACAAGGCGAGGCGGAGA
CTGACCCTCATCGATTGCGGCAGCGACAGAAACAGATCGACTATGGCAAG
AATACCTTGGGATACGACCGTTATAAGGAGATAATTCCAAAGGAACTCCG
ACGACGTACAGATCCAAGAACACCGGACATTCATGCCCGAATCAGTACCA
AGCGTTTCAATGGCCTGGTGCGTGCATGGCGGCGGCGCCTGCACGACTTT
GATCCGCATGGCACAATTATTGTTCCATCTATGCCATCTTCATCTGCAGC
ATCGCCTTCAGCCGTGGTATCCGACGTACTCATAGGAGGGAGTTCTCCGG
AACGGGCTCCCTTTGGCGAGACGCCAAGTCCCTTCTCAGAACAAACCAGC
GAACAGAAAGGCTTGGCTCCCACTCATGCCAGCAATGGCAAGGAAGACGA
CATTAATACGCAGCAGGGGGGAGCTGGGAGTCCGGGGGTAAAAGACAATG
ACAAGAGATCACGGGCGATTCGTTGTAGCAAAGATGGTAGTTTAGCCACG
GTTGAATTTACTTCAGGACTGCGTGAAGACGCAGTGGAGGGAGAAGATGT
GCTGCAGAGCATTGAAGAAACGAATTGGTTTCATGACGAAAGGGGCGCAA
ATGAGCGCTACGCCGGCACATACCGAGACACGGGCATGCTGCCAGGTGAC
CCGCCCTTCGCCTGCTACAGCGATGATGATCTTCTGTAAATGTTTGACAA
ACGTACTGGTCGAAGCAGTCACATCACTCCCCACACCTACAAAAGGCTAG
GGAAAGTGCACTATTATCGCAAAGAAATGGACAGCTTTCGGCAG
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Synonyms
Publications