EWM29107.1, cds1466 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29107.1 vs. NCBI_GenBank
Match: gi|585111627|gb|EWM29107.1| (hypothetical protein Naga_100007g112 [Nannochloropsis gaditana]) HSP 1 Score: 667.152 bits (1720), Expect = 0.000e+0 Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 0 Query: 1 MFDKRTGRSSHITPHTYKRLGKVHYYRKEMDSFRQRPTSKRFRYEADDCRSTKTKPRLPSCLIGTTPEVNSTALRDRRNTITPQAGVSGQGEAETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDPHGTIIVPSMPSSSAASPSAVVSDVLIGGSSPERAPFGETPSPFSEQTSEQKGLAPTHASNGKEDDINTQQGGAGSPGVKDNDKRSRAIRCSKDGSLATVEFTSGLREDAVEGEDVLQSIEETNWFHDERGANERYAGTYRDTGMLPGDPPFACYSDDDLL 323 MFDKRTGRSSHITPHTYKRLGKVHYYRKEMDSFRQRPTSKRFRYEADDCRSTKTKPRLPSCLIGTTPEVNSTALRDRRNTITPQAGVSGQGEAETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDPHGTIIVPSMPSSSAASPSAVVSDVLIGGSSPERAPFGETPSPFSEQTSEQKGLAPTHASNGKEDDINTQQGGAGSPGVKDNDKRSRAIRCSKDGSLATVEFTSGLREDAVEGEDVLQSIEETNWFHDERGANERYAGTYRDTGMLPGDPPFACYSDDDLL Sbjct: 1 MFDKRTGRSSHITPHTYKRLGKVHYYRKEMDSFRQRPTSKRFRYEADDCRSTKTKPRLPSCLIGTTPEVNSTALRDRRNTITPQAGVSGQGEAETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDPHGTIIVPSMPSSSAASPSAVVSDVLIGGSSPERAPFGETPSPFSEQTSEQKGLAPTHASNGKEDDINTQQGGAGSPGVKDNDKRSRAIRCSKDGSLATVEFTSGLREDAVEGEDVLQSIEETNWFHDERGANERYAGTYRDTGMLPGDPPFACYSDDDLL 323
BLAST of EWM29107.1 vs. NCBI_GenBank
Match: gi|676377961|ref|XP_009032259.1| (hypothetical protein AURANDRAFT_17941, partial [Aureococcus anophagefferens] >gi|323456728|gb|EGB12594.1| hypothetical protein AURANDRAFT_17941, partial [Aureococcus anophagefferens]) HSP 1 Score: 99.3673 bits (246), Expect = 8.973e-23 Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 0 Query: 94 ETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDP 163 ETD RL QR+K+I YGKNTLGYDRY ++PKE R R DPRTPD+ + S ++F+G+V+AWRRRLH++DP Sbjct: 1 ETDARRLSQRRKEITYGKNTLGYDRYTRLVPKEKRSRQDPRTPDVTGKYSKRQFDGIVKAWRRRLHEWDP 70
BLAST of EWM29107.1 vs. NCBI_GenBank
Match: gi|760447375|ref|XP_011400756.1| (Oocyte-specific histone RNA stem-loop-binding protein 2 [Auxenochlorella protothecoides] >gi|675355329|gb|KFM27769.1| Oocyte-specific histone RNA stem-loop-binding protein 2 [Auxenochlorella protothecoides]) HSP 1 Score: 103.605 bits (257), Expect = 1.746e-22 Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 0 Query: 92 EAETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRT-DPRTPDIHARISTKRFNGLVRAWRRRLHDFDP 163 E ETDPHRL QRQKQ+D+GKNTLGY RY+E IP+ RRR DP TPD+H S + F+G ++ WRR+LH++DP Sbjct: 29 EHETDPHRLAQRQKQVDFGKNTLGYQRYREAIPRSQRRRNKDPSTPDVHKACSKRAFDGQIKKWRRQLHEWDP 101
BLAST of EWM29107.1 vs. NCBI_GenBank
Match: gi|159474504|ref|XP_001695365.1| (histone gene transcript 5' hairpin-binding protein [Chlamydomonas reinhardtii] >gi|158275848|gb|EDP01623.1| histone gene transcript 5' hairpin-binding protein, partial [Chlamydomonas reinhardtii]) HSP 1 Score: 99.3673 bits (246), Expect = 1.286e-21 Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 0 Query: 94 ETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDPHG 165 + D HRL QRQKQIDYGKNTLGY RY ++IPK+ R++ DP+TPD+H S + F GL++ WRR+LH +D G Sbjct: 52 DLDDHRLAQRQKQIDYGKNTLGYQRYLQLIPKDKRQKGDPQTPDMHLNNSKRAFEGLIKVWRRQLHKYDQDG 123
BLAST of EWM29107.1 vs. NCBI_GenBank
Match: gi|939652663|ref|XP_014275250.1| (PREDICTED: uncharacterized protein LOC106680224 [Halyomorpha halys]) HSP 1 Score: 102.449 bits (254), Expect = 4.140e-21 Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 0 Query: 75 RDRRNTITPQAGVSGQG---EAETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDP 163 R R ITP S + E ETDP L +RQKQIDYGKNT+GYDRY++++PKE R++ PRTP +H + S + ++GL++ WR+RLH +DP Sbjct: 211 RKRSREITPGKRSSEKKTPREIETDPEVLARRQKQIDYGKNTIGYDRYRQLVPKEARKKMHPRTPPLHLKFSRRAWDGLIKVWRQRLHFWDP 302
BLAST of EWM29107.1 vs. NCBI_GenBank
Match: gi|1214708347|gb|OWZ19640.1| (hypothetical protein PHMEG_0006067 [Phytophthora megakarya]) HSP 1 Score: 96.6709 bits (239), Expect = 3.009e-20 Identity = 56/147 (38.10%), Postives = 80/147 (54.42%), Query Frame = 0 Query: 94 ETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDPHGTIIVPSMPSSSAASPSAVVSDVLIGGSSPERAPFGETPSPFSEQTSE----QKGL--APTHA--SNGKEDDINTQ 232 ETDPHRL QRQKQIDYGKNT+GYDRY +P+ RR P+TPD + K F+G+VR WR+ LH +DP P + A + + + ++ +S E A + + + T GL AP H+ N ED+++ + Sbjct: 65 ETDPHRLAQRQKQIDYGKNTIGYDRYCAQVPRHQRRSYHPKTPDKTKSVGKKVFDGMVRKWRQALHKYDP---------PELTEALKTVEMENAVVEDASKEAASDAKDSTSLASTTDSDVKTDAGLSTAPAHSIYENFYEDNLDQE 202
BLAST of EWM29107.1 vs. NCBI_GenBank
Match: gi|813118185|ref|XP_012195876.1| (hypothetical protein SPRG_01921 [Saprolegnia parasitica CBS 223.65] >gi|641539300|gb|KDO33109.1| hypothetical protein SPRG_01921 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 97.0561 bits (240), Expect = 5.092e-20 Identity = 61/158 (38.61%), Postives = 88/158 (55.70%), Query Frame = 0 Query: 45 EADDCRSTKTKPRLPSCLIGTTPEVNSTALRDRRNTITPQAGVSGQGEAETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRR-TDPRTPDIHARISTKRFNGLVRAWRRRLHDFDPHGTIIVPSMPSSSAASPSAVVSDVLIGGSSPERAPFGE 201 EA+ RST R P+ L T P A R +N + + ETDPH+L QRQKQID+GKNT+GYDRY +++P+ R++ P TPD IS + ++G VR WR LH +DP T P P+S+A S +A ++ ++P + G+ Sbjct: 82 EAEAERSTPVAAR-PAALASTPPAPREVAPRLEKNQMF---------QRETDPHKLAQRQKQIDFGKNTIGYDRYTQLVPRNERKQGVHPSTPDKTQAISKRMWDGRVRVWRSALHFWDPE-TPQAPVAPASTALSATA---HTVVPSTAPPKPKVGD 225
BLAST of EWM29107.1 vs. NCBI_GenBank
Match: gi|145343490|ref|XP_001416355.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144576580|gb|ABO94648.1| predicted protein [Ostreococcus lucimarinus CCE9901]) HSP 1 Score: 98.5969 bits (244), Expect = 6.225e-20 Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 0 Query: 94 ETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDP 163 ETDPH+LRQRQ+QIDYGKNTLGY RY+E++ K RR +D TP+I A +S + F+G VR WRR LH +DP Sbjct: 120 ETDPHKLRQRQRQIDYGKNTLGYARYRELVAKSARRSSDAWTPNIRAGMSKRAFDGAVRKWRRLLHAYDP 189
BLAST of EWM29107.1 vs. NCBI_GenBank
Match: gi|298706915|emb|CBJ29742.1| (Histone hairpin binding protein [Ectocarpus siliculosus]) HSP 1 Score: 100.138 bits (248), Expect = 1.504e-19 Identity = 54/136 (39.71%), Postives = 75/136 (55.15%), Query Frame = 0 Query: 58 LPSCLIGTTPEVNSTALRDRRNTITPQAGVSGQGEA-------ETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDPHGTIIVPSMPSSSAASPSAVVSD 186 LP L+G P+ +A GQGEA E DPHR+ QRQKQID+GKNT GYDRY +P+ R R DP+TP+ ++S +R++G +R+WRR+LH++D + V S S V+D Sbjct: 889 LPRHLLGKKPDF--------------EAEGGGQGEALKFASDREEDPHRIAQRQKQIDFGKNTSGYDRYLAAVPRNKRSRGDPKTPNKEKKMSKRRWDGQIRSWRRQLHEYD----VEVAGAASGEDGSHDQAVTD 1006
BLAST of EWM29107.1 vs. NCBI_GenBank
Match: gi|642935367|ref|XP_008197983.1| (PREDICTED: histone RNA hairpin-binding protein [Tribolium castaneum] >gi|270013872|gb|EFA10320.1| hypothetical protein TcasGA2_TC012536 [Tribolium castaneum]) HSP 1 Score: 95.5153 bits (236), Expect = 1.554e-19 Identity = 48/111 (43.24%), Postives = 74/111 (66.67%), Query Frame = 0 Query: 54 TKPRLPSCLIGTTPEVNSTALRDRRNTITPQAGVSGQGEAETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDPH 164 T+ RL +C + +V+S L + N TP S + E ETDP LR+RQKQIDYGKNT+GYD Y +++P++ R+ DP+TP+ + S + ++GL++ WR +LH +DP+ Sbjct: 132 TRERLEAC----SSKVSSLNLDE--NGKTPPRKKSKKIELETDPEVLRRRQKQIDYGKNTIGYDEYTKLVPRQQRKSDDPQTPNKFLKYSRRGWDGLIKQWRLKLHKYDPN 236 The following BLAST results are available for this feature:
BLAST of EWM29107.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|