EWM29107.1, cds1466 (CDS) Nannochloropsis gaditana

Overview
NameEWM29107.1
Unique Namecds1466
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:715279..715383 -
Alignment locationCM002457.1:714328..715194 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29107.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100007g112.6434.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:715279..715383 -
CM002457.1supercontigCM002457.1:714328..715194 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003729mRNA binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR026502SLBP1/SLBP2
IPR029344SLBP_RNA_bind
Homology
BLAST of EWM29107.1 vs. NCBI_GenBank
Match: gi|585111627|gb|EWM29107.1| (hypothetical protein Naga_100007g112 [Nannochloropsis gaditana])

HSP 1 Score: 667.152 bits (1720), Expect = 0.000e+0
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 0
Query:    1 MFDKRTGRSSHITPHTYKRLGKVHYYRKEMDSFRQRPTSKRFRYEADDCRSTKTKPRLPSCLIGTTPEVNSTALRDRRNTITPQAGVSGQGEAETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDPHGTIIVPSMPSSSAASPSAVVSDVLIGGSSPERAPFGETPSPFSEQTSEQKGLAPTHASNGKEDDINTQQGGAGSPGVKDNDKRSRAIRCSKDGSLATVEFTSGLREDAVEGEDVLQSIEETNWFHDERGANERYAGTYRDTGMLPGDPPFACYSDDDLL 323
            MFDKRTGRSSHITPHTYKRLGKVHYYRKEMDSFRQRPTSKRFRYEADDCRSTKTKPRLPSCLIGTTPEVNSTALRDRRNTITPQAGVSGQGEAETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDPHGTIIVPSMPSSSAASPSAVVSDVLIGGSSPERAPFGETPSPFSEQTSEQKGLAPTHASNGKEDDINTQQGGAGSPGVKDNDKRSRAIRCSKDGSLATVEFTSGLREDAVEGEDVLQSIEETNWFHDERGANERYAGTYRDTGMLPGDPPFACYSDDDLL
Sbjct:    1 MFDKRTGRSSHITPHTYKRLGKVHYYRKEMDSFRQRPTSKRFRYEADDCRSTKTKPRLPSCLIGTTPEVNSTALRDRRNTITPQAGVSGQGEAETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDPHGTIIVPSMPSSSAASPSAVVSDVLIGGSSPERAPFGETPSPFSEQTSEQKGLAPTHASNGKEDDINTQQGGAGSPGVKDNDKRSRAIRCSKDGSLATVEFTSGLREDAVEGEDVLQSIEETNWFHDERGANERYAGTYRDTGMLPGDPPFACYSDDDLL 323          
BLAST of EWM29107.1 vs. NCBI_GenBank
Match: gi|676377961|ref|XP_009032259.1| (hypothetical protein AURANDRAFT_17941, partial [Aureococcus anophagefferens] >gi|323456728|gb|EGB12594.1| hypothetical protein AURANDRAFT_17941, partial [Aureococcus anophagefferens])

HSP 1 Score: 99.3673 bits (246), Expect = 8.973e-23
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 0
Query:   94 ETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDP 163
            ETD  RL QR+K+I YGKNTLGYDRY  ++PKE R R DPRTPD+  + S ++F+G+V+AWRRRLH++DP
Sbjct:    1 ETDARRLSQRRKEITYGKNTLGYDRYTRLVPKEKRSRQDPRTPDVTGKYSKRQFDGIVKAWRRRLHEWDP 70          
BLAST of EWM29107.1 vs. NCBI_GenBank
Match: gi|760447375|ref|XP_011400756.1| (Oocyte-specific histone RNA stem-loop-binding protein 2 [Auxenochlorella protothecoides] >gi|675355329|gb|KFM27769.1| Oocyte-specific histone RNA stem-loop-binding protein 2 [Auxenochlorella protothecoides])

HSP 1 Score: 103.605 bits (257), Expect = 1.746e-22
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 0
Query:   92 EAETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRT-DPRTPDIHARISTKRFNGLVRAWRRRLHDFDP 163
            E ETDPHRL QRQKQ+D+GKNTLGY RY+E IP+  RRR  DP TPD+H   S + F+G ++ WRR+LH++DP
Sbjct:   29 EHETDPHRLAQRQKQVDFGKNTLGYQRYREAIPRSQRRRNKDPSTPDVHKACSKRAFDGQIKKWRRQLHEWDP 101          
BLAST of EWM29107.1 vs. NCBI_GenBank
Match: gi|159474504|ref|XP_001695365.1| (histone gene transcript 5' hairpin-binding protein [Chlamydomonas reinhardtii] >gi|158275848|gb|EDP01623.1| histone gene transcript 5' hairpin-binding protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 99.3673 bits (246), Expect = 1.286e-21
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 0
Query:   94 ETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDPHG 165
            + D HRL QRQKQIDYGKNTLGY RY ++IPK+ R++ DP+TPD+H   S + F GL++ WRR+LH +D  G
Sbjct:   52 DLDDHRLAQRQKQIDYGKNTLGYQRYLQLIPKDKRQKGDPQTPDMHLNNSKRAFEGLIKVWRRQLHKYDQDG 123          
BLAST of EWM29107.1 vs. NCBI_GenBank
Match: gi|939652663|ref|XP_014275250.1| (PREDICTED: uncharacterized protein LOC106680224 [Halyomorpha halys])

HSP 1 Score: 102.449 bits (254), Expect = 4.140e-21
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 0
Query:   75 RDRRNTITPQAGVSGQG---EAETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDP 163
            R R   ITP    S +    E ETDP  L +RQKQIDYGKNT+GYDRY++++PKE R++  PRTP +H + S + ++GL++ WR+RLH +DP
Sbjct:  211 RKRSREITPGKRSSEKKTPREIETDPEVLARRQKQIDYGKNTIGYDRYRQLVPKEARKKMHPRTPPLHLKFSRRAWDGLIKVWRQRLHFWDP 302          
BLAST of EWM29107.1 vs. NCBI_GenBank
Match: gi|1214708347|gb|OWZ19640.1| (hypothetical protein PHMEG_0006067 [Phytophthora megakarya])

HSP 1 Score: 96.6709 bits (239), Expect = 3.009e-20
Identity = 56/147 (38.10%), Postives = 80/147 (54.42%), Query Frame = 0
Query:   94 ETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDPHGTIIVPSMPSSSAASPSAVVSDVLIGGSSPERAPFGETPSPFSEQTSE----QKGL--APTHA--SNGKEDDINTQ 232
            ETDPHRL QRQKQIDYGKNT+GYDRY   +P+  RR   P+TPD    +  K F+G+VR WR+ LH +DP         P  + A  +  + + ++  +S E A   +  +  +  T        GL  AP H+   N  ED+++ +
Sbjct:   65 ETDPHRLAQRQKQIDYGKNTIGYDRYCAQVPRHQRRSYHPKTPDKTKSVGKKVFDGMVRKWRQALHKYDP---------PELTEALKTVEMENAVVEDASKEAASDAKDSTSLASTTDSDVKTDAGLSTAPAHSIYENFYEDNLDQE 202          
BLAST of EWM29107.1 vs. NCBI_GenBank
Match: gi|813118185|ref|XP_012195876.1| (hypothetical protein SPRG_01921 [Saprolegnia parasitica CBS 223.65] >gi|641539300|gb|KDO33109.1| hypothetical protein SPRG_01921 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 97.0561 bits (240), Expect = 5.092e-20
Identity = 61/158 (38.61%), Postives = 88/158 (55.70%), Query Frame = 0
Query:   45 EADDCRSTKTKPRLPSCLIGTTPEVNSTALRDRRNTITPQAGVSGQGEAETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRR-TDPRTPDIHARISTKRFNGLVRAWRRRLHDFDPHGTIIVPSMPSSSAASPSAVVSDVLIGGSSPERAPFGE 201
            EA+  RST    R P+ L  T P     A R  +N +          + ETDPH+L QRQKQID+GKNT+GYDRY +++P+  R++   P TPD    IS + ++G VR WR  LH +DP  T   P  P+S+A S +A     ++  ++P +   G+
Sbjct:   82 EAEAERSTPVAAR-PAALASTPPAPREVAPRLEKNQMF---------QRETDPHKLAQRQKQIDFGKNTIGYDRYTQLVPRNERKQGVHPSTPDKTQAISKRMWDGRVRVWRSALHFWDPE-TPQAPVAPASTALSATA---HTVVPSTAPPKPKVGD 225          
BLAST of EWM29107.1 vs. NCBI_GenBank
Match: gi|145343490|ref|XP_001416355.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144576580|gb|ABO94648.1| predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 98.5969 bits (244), Expect = 6.225e-20
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 0
Query:   94 ETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDP 163
            ETDPH+LRQRQ+QIDYGKNTLGY RY+E++ K  RR +D  TP+I A +S + F+G VR WRR LH +DP
Sbjct:  120 ETDPHKLRQRQRQIDYGKNTLGYARYRELVAKSARRSSDAWTPNIRAGMSKRAFDGAVRKWRRLLHAYDP 189          
BLAST of EWM29107.1 vs. NCBI_GenBank
Match: gi|298706915|emb|CBJ29742.1| (Histone hairpin binding protein [Ectocarpus siliculosus])

HSP 1 Score: 100.138 bits (248), Expect = 1.504e-19
Identity = 54/136 (39.71%), Postives = 75/136 (55.15%), Query Frame = 0
Query:   58 LPSCLIGTTPEVNSTALRDRRNTITPQAGVSGQGEA-------ETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDPHGTIIVPSMPSSSAASPSAVVSD 186
            LP  L+G  P+               +A   GQGEA       E DPHR+ QRQKQID+GKNT GYDRY   +P+  R R DP+TP+   ++S +R++G +R+WRR+LH++D    + V    S    S    V+D
Sbjct:  889 LPRHLLGKKPDF--------------EAEGGGQGEALKFASDREEDPHRIAQRQKQIDFGKNTSGYDRYLAAVPRNKRSRGDPKTPNKEKKMSKRRWDGQIRSWRRQLHEYD----VEVAGAASGEDGSHDQAVTD 1006          
BLAST of EWM29107.1 vs. NCBI_GenBank
Match: gi|642935367|ref|XP_008197983.1| (PREDICTED: histone RNA hairpin-binding protein [Tribolium castaneum] >gi|270013872|gb|EFA10320.1| hypothetical protein TcasGA2_TC012536 [Tribolium castaneum])

HSP 1 Score: 95.5153 bits (236), Expect = 1.554e-19
Identity = 48/111 (43.24%), Postives = 74/111 (66.67%), Query Frame = 0
Query:   54 TKPRLPSCLIGTTPEVNSTALRDRRNTITPQAGVSGQGEAETDPHRLRQRQKQIDYGKNTLGYDRYKEIIPKELRRRTDPRTPDIHARISTKRFNGLVRAWRRRLHDFDPH 164
            T+ RL +C    + +V+S  L +  N  TP    S + E ETDP  LR+RQKQIDYGKNT+GYD Y +++P++ R+  DP+TP+   + S + ++GL++ WR +LH +DP+
Sbjct:  132 TRERLEAC----SSKVSSLNLDE--NGKTPPRKKSKKIELETDPEVLRRRQKQIDYGKNTIGYDEYTKLVPRQQRKSDDPQTPNKFLKYSRRGWDGLIKQWRLKLHKYDPN 236          
The following BLAST results are available for this feature:
BLAST of EWM29107.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111627|gb|EWM29107.1|0.000e+0100.00hypothetical protein Naga_100007g112 [Nannochlorop... [more]
gi|676377961|ref|XP_009032259.1|8.973e-2362.86hypothetical protein AURANDRAFT_17941, partial [Au... [more]
gi|760447375|ref|XP_011400756.1|1.746e-2261.64Oocyte-specific histone RNA stem-loop-binding prot... [more]
gi|159474504|ref|XP_001695365.1|1.286e-2158.33histone gene transcript 5' hairpin-binding protein... [more]
gi|939652663|ref|XP_014275250.1|4.140e-2151.09PREDICTED: uncharacterized protein LOC106680224 [H... [more]
gi|1214708347|gb|OWZ19640.1|3.009e-2038.10hypothetical protein PHMEG_0006067 [Phytophthora m... [more]
gi|813118185|ref|XP_012195876.1|5.092e-2038.61hypothetical protein SPRG_01921 [Saprolegnia paras... [more]
gi|145343490|ref|XP_001416355.1|6.225e-2062.86predicted protein [Ostreococcus lucimarinus CCE990... [more]
gi|298706915|emb|CBJ29742.1|1.504e-1939.71Histone hairpin binding protein [Ectocarpus silicu... [more]
gi|642935367|ref|XP_008197983.1|1.554e-1943.24PREDICTED: histone RNA hairpin-binding protein [Tr... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1469rna1469Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications