rna1467, rna1467 (mRNA) Nannochloropsis gaditana

Overview
Namerna1467
Unique Namerna1467
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3020
Alignment locationCM002457.1:709548..710325 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100007g115.6493.mrna
Orig protein idgnl|cribi|Naga_100007g115.6493
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:709548..710325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100007g115gene1417Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1467rna1467-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29166.1cds1464Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1467 ID=rna1467|Name=rna1467|organism=Nannochloropsis gaditana|type=mRNA|length=3020bp
GGCGGCACGTGTGATGGTGATCAGGCGGGAGTCCCGCGAGCACTCGATCT
GCCTCATCCATCGCAATTGTCTCTCAATGCCACAGCAGAAGTGTGAATAC
TAATAGCAGATATGCCTGGAGGACATTGTGCCGTGGACTAGTGTAAATAT
CCGAAGCTGTGGCGAAGGAGGCTGCACCACCGAGACGACTTCTGTCACAA
TGACAGGATCAGTCACGCCGCTCTGGTACGGAAATCACTGTCAGCGTGCA
ATGCCATGTATGGGAATTCTGTTTGCCTTGCTATACATTGTCTTTTTATT
AAGACATGGGGATTGGATGTCGAAGTGGGATGAGGTGAAGGCAGGCCCCT
CACAACGGGATTTGCTCGTCCTCAATTCAAGAAATCTATTCGCTTGGTGG
CAACACAATGACTCGGCTTTCACAATGGAAAATGACTACTCAAAAGAAGG
CCTTTGGGAATCAGAATCTTTGCCGTTCGGGGAAAAAACTCTGGTTATTT
ACAGCGTACATAATGATCCATCGCATGACACGACATCCTACGAGAACCTG
GACTTCTTTTTGAGGGTGGGCGTTGATCAAGAATCAGAACGCTTTGTGGA
TTACCTTTTTCTAGTTCCATCAGCAATCTTTCACTCATTTAACCTCACTA
GCGGTCGAAAGGGAGACGACATGCCAATGTTTCCCTCTGCTGATCACGTT
CGCGTGATGGAACGACCACACGACTGTCTAGGCACCAGCGGCCTGCGCAG
TTTGATCACCGACAACGATTGGAGGGGCGGCATCAAACATGGCGCAAGAA
TTTCAAGTATACCATTGAACATGAACGCTCTTCTAAGCCATTATTCTCAC
TTTATTCTTCTAGACTCGACAGTGCGGGGTCCTTTCCTACCGCGGTATGT
GCATCGGGCGCGCTCAGGAGGGAGTCGATGGGACTCTCCTCAAGCAGTCA
AGTCTTGGGTAAGTGTACTCACAGACCGGGTGGGGCCTGAGGTCAAACTT
GTCGGTCGAAGTGTCAGCTGTGAGCCCGAGCTGCACGTGCAGGCCCCCGT
CTGGGCGACAGACCGCCAAGGTCTCAGGCTACTCCTGAAAAATGGCGTTT
TAGATTGCGCCATGGAGGAAGCCAGTGCCCGAGAGCGGCACGAGCTGGGT
GCCACCCGGGCGGTCTTAAACGCTGGCTACCATGTGGATTGTCTCATGCT
TCGCTATCAGGGAATCAACCTTGCACGCCTCAGGGAGTACGGTCTGCCAT
GCACTGCCCGGGACAATCCCAGTTCTCCCTTACTTAACGACGGGCTACCT
GTCAATCCTCTAGAGGTTATTTTCGTCTTGGCCAATCGTCACTTTCTGGC
ATCGGATGCCCTTGTGCGCCGCTACACTGATTACTTCCTAGGGCGTGTGG
ACCTCGAAGACAATCAGGCTACGACGTTACGTGGTCAAGCAGCCTTAGAG
GCCCGTCGCCAACGCTTAGCAGGCATGGTAGCCAGCTGCGGAGCCACATT
GGACCGCAAACACTTGGCAACCAGATGTCCTGGCTGTGTATCGGGGAAGT
CGCTCGAGGTGGATCAGGAGATTTTTATCCAAAACCATGTCATGAAGGGT
TACGATTTCCAGTTTTCTGTCCCGACAACAATCGCGAATCATCCTCCGCA
AGCATTTTGCGAGGCATTTGCTCGCTATCAGGCACCCGACTTGACCCCTT
AAATGCACACAAATTCTGAAGCTATCTTGTATGTTACGAAACATGTGTTC
GGCTTCAGGTCAGGAGGTGGAATTTTGGATGTCTCAGTATTTGAGTTAAA
AAAATTATGGAAACGCCCTGATTGCTTAAGCAAATGAGTCATATGCTAGT
TATTATGTACACAACGACAGAAAAGTGGTGAGACGAAAATGTCAAGCGCT
TCGAAAGTATTACCAGTTTTACAGGATTGACCTTCCCTTTGCCAATCTGT
CAATTACGTCGACGTTCATCGTCGCTACAATGCCGTGTGAGATAAGTTGA
TCCAAATAAATGGAGAACCTTACATAAGCCCCCCCTTCCTTGTGAACAAA
GTCCATTTCGGCACTACCTCTGGTGGCTTTCTTTTTCTTTTTCCCCCAGC
AAGCGAAGGAGAAGAGATCAGAAATTGTTTCAATTAGTCCTGTGACTTGA
CAAATACGATATAGAGTATGCAGATGCGTAAGATGGGATGCATGTAAGTG
AGCACCAAGCAAAATGCATGAATAGAAGCAAAACGCATAGAAGTCATCAC
ATAAATTGGATGAGGAACGATGTGACCATGTAATGGTTCACAAGCCAAAA
CTGAAATGGGTGAAGGCGAAGTTCATCTCCCGTCCGATCGCGGTGCAACT
CACGGATCGTCTCGTTGCACTCGTCCGTGCCAGCAACGATCATCACAACG
TCGTGAAACCGCAGGTATACGACAGTGACTTCACCGTCACGGAAAAATTG
TGGCAAAGAGGCCACTTGCCAATTTTGCCCTGTTCTTCGGTACAGAGCTC
GTTCCCATTGAAGTCGACCACTGTTGTGCCCCATGGCCTGAGATGGAAAC
ACTTTGCCATATAGAACAATGAACTCTGCATTTACAATGTAGACCGAGTG
CAAGGGCATACGCTGTGAATCAAGAGCGAAGTGATGGGGGGGGAATGAAA
GAGTATGAAGGTGAGAAATTGACATGAAATCGAAGCGATAGCACATCAAT
CCCTCTAAAAAGAGCGCTGAGTAGGCTTCATTATTTCAATTCATGATGCC
GCTGGATGAGTTTTGGCTCAAACACACCAAAATGACACTCTGAAATCTTG
TCTTGTCTTCCAGACGCCTGGACCGCTACTTCTCAATCCATGTTCATATA
CATGTGTCTTTTTTACACGAGTTCGTCAAGCCCCACTATACAAGTGTACA
CGTCCCATCATGTCTTGCTCCCTGCCTAAGAAAGTTTCAGACAACTAGTG
CAATTCTAATCAGAAATGCCGAGGCTGCACGTAGCGTTTTAATTCCTGTT
ATTCCCGGCTAAAATTCTGA
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protein sequence of rna1467

>rna1467-protein ID=rna1467-protein|Name=rna1467|organism=Nannochloropsis gaditana|type=polypeptide|length=189bp
MCYRFDFMSISHLHTLSFPPHHFALDSQRMPLHSVYIVNAEFIVLYGKVF
PSQAMGHNSGRLQWERALYRRTGQNWQVASLPQFFRDGEVTVVYLRFHDV
VMIVAGTDECNETILTGLIETISDLFSFACWGKKKKKATRGSAEMDFVHK
EGGAYVRFSIYLDQLISHGIVATMNVDVIDRLAKGRSIL
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mRNA from alignment at CM002457.1:709548..710325+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1467 ID=rna1467|Name=rna1467|organism=Nannochloropsis gaditana|type=mRNA|length=778bp|location=Sequence derived from alignment at CM002457.1:709548..710325+ (Nannochloropsis gaditana)
ATGTGCTATCGCTTCGATTTCATGTCAATTTCTCACCTTCATACTctttc
attccccccccatcaCTTCGCTCTTGATTCACAGCGTATGCCCTTGCACT
CGGTCTACATTGTAAATGCAGAGTTCATTGTTCTATATGGCAAAGTGTTT
CCATCTCAGGCCATGGGGCACAACAGTGGTCGACTTCAATGGGAACGAGC
TCTGTACCGAAGAACAGGGCAAAATTGGCAAGTGGCCTCTTTGCCACAAT
TTTTCCGTGACGGTGAAGTCACTGTCGTATACCTGCGGTTTCACGACGTT
GTGATGATCGTTGCTGGCACGGACGAGTGCAACGAGACGATCCGTGAGTT
GCACCGCGATCGGACGGGAGATGAACTTCGCCTTCACCCATTTCAGTTTT
GGCTTGTGAACCATTACATGGTCACATCGTTCCTCATCCAATTTATGTGA
TGACTTCTATGCGTTTTGCTTCTATTCATGCATTTTGCTTGGTGCTCACT
TACATGCATCCCATCTTACGCATCTGCATACTCTATATCGTATTTGTCAA
GTCACAGGACTAATTGAAACAATTTCTgatctcttctccttcgcttgctg
ggggaaaaagaaaaagaaagccaCCAGAGGTAGTGCCGAAATGGACTTTG
TTcacaaggaagggggggcttATGTAAGGTTCTCCATTTATTTGGATCAA
CTTATCTCACACGGCATTGTAGCGACGATGAACGTCGACGTAATTGACAG
ATTGGCAAAGGGAAGGTCAATCCTGTAA
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Coding sequence (CDS) from alignment at CM002457.1:709548..710325+

>rna1467 ID=rna1467|Name=rna1467|organism=Nannochloropsis gaditana|type=CDS|length=1140bp|location=Sequence derived from alignment at CM002457.1:709548..710325+ (Nannochloropsis gaditana)
ATGTGCTATCGCTTCGATTTCATGTCAATTTCTCACCTTCATACTctttc
attccccccccatcaCTTCGCTCTTGATTCACAGCGTATGCCCTTGCACT
CGGTCTACATTGTAAATGCAGAGTTCATTGTTCTATATGGCAAAGTGTTT
CCATCTCAGGCCATGGGGCACAACAGTGGTCGACTTCAATGGGAACGAGC
TCTGTACCGAAGAACAGGGCAAAATTGGCAAGTGGCCTCTTTGCCACAAT
TTTTCCGTGACGGTGAAGTCACTGTCGTATACCTGCGGTTTCACGACGTT
GTGATGATCGTTGCTGGCACGGACGAGTGCAACGAGACGATCCTCACAGG
ACTAATTGAAACAATTTCTgatctcttctccttcgcttgctgggggaaaa
agaaaaagaaagccaCCAGAGGTAGTGCCGAAATGGACTTTGTTcacaag
gaagggggggcttATGTAAGGTTCTCCATTTATTTGGATCAACTTATCTC
ACACGGCATTGTAGCGACGATGAACGTCGACGTAATTGACAGATTGGCAA
AGGGAAGGTCAATCCTGTAAATGTGCTATCGCTTCGATTTCATGTCAATT
TCTCACCTTCATACTctttcattccccccccatcaCTTCGCTCTTGATTC
ACAGCGTATGCCCTTGCACTCGGTCTACATTGTAAATGCAGAGTTCATTG
TTCTATATGGCAAAGTGTTTCCATCTCAGGCCATGGGGCACAACAGTGGT
CGACTTCAATGGGAACGAGCTCTGTACCGAAGAACAGGGCAAAATTGGCA
AGTGGCCTCTTTGCCACAATTTTTCCGTGACGGTGAAGTCACTGTCGTAT
ACCTGCGGTTTCACGACGTTGTGATGATCGTTGCTGGCACGGACGAGTGC
AACGAGACGATCCTCACAGGACTAATTGAAACAATTTCTgatctcttctc
cttcgcttgctgggggaaaaagaaaaagaaagccaCCAGAGGTAGTGCCG
AAATGGACTTTGTTcacaaggaagggggggcttATGTAAGGTTCTCCATT
TATTTGGATCAACTTATCTCACACGGCATTGTAGCGACGATGAACGTCGA
CGTAATTGACAGATTGGCAAAGGGAAGGTCAATCCTGTAA
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Synonyms
Publications