rna1463, rna1463 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1463
Unique Name	rna1463
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2899
Alignment location	CM002457.1:702300..703552 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100007g118.6538.mrna
Orig protein id	gnl\|cribi\|Naga_100007g118.6538
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:702300..703552 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100007g118	gene1413	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1463	rna1463-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29211.1	cds1460	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:702300..703552+
coding sequence from alignment at CM002457.1:702300..703552+

mRNA sequence

>rna1463 ID=rna1463|Name=rna1463|organism=Nannochloropsis gaditana|type=mRNA|length=2899bp
AGCCGAAGGCCTGAGCGGCCCCGCGCGCTAGCTATACTTTAGTGTTTGTT
GGGCTTGAAGAGGTCTTTCTGCTTCGTGGCGCGCGGCTCGATGCAGCATG
ATGGTTGGGAGGGAAGTCTAGCAGCTTGATACTTGGGAGAAGACGTGAAG
TATGTGTTGATTGTAAGGGGTTTCTCACAAGGGACTGGCATTCAGCCTTT
TCTTTGCATCTCGACTCATTTTTTTATCATTGGCAGGCATAATTGCATAC
GCCATTGACAAAGTTATGTTCTGTCATGCGTCACCTTCTCCACCTCCTCC
ACCTCTTCATGCTGGTCATCCCGTCGCGCCACACAGAAATGCGGCAGCAG
TTCGCCTTATCCGTGCCGGGCACACTTTGCTGAGCCCCGATGAGCATCGT
GAAATCTTTGCCAACTTCATTCAAAGCGGGCGAAATCCGGGATACGTGGA
TGCGCTGAAAGAGCTGTTACACAGAGACGACGAAATGGGTCATCACTCGT
TTGTTGTTAATGCGCAAGACATTATCGCGTTCAATCCGATGGTCGGCTAT
CTCCTCATGTACAATCCCATGGTTCTTTTACCGATCTTCGAGGAAGCTGT
GCTTCGGGTCCAAATGACGCTCCTAAAGACCCTCGAAGCCAAGGATCGTG
TCGATCAGCCCGACAACGCGACACAGCAACTCCGTTCACACCGGAGTGTT
AAAGGGCACGTCCATGTCCGCATTTTTCACATCCCGCCCATTCCAGAACT
TTACAAGTCTAGTCTGAGTGACATTCGTGCCCACGACGTAGGCCGTCTCA
TACAAGTGATCGGAACGGTGGTGCGCTTGGGAGCGGTGAAGATGCTGAAT
GCGTCCCGAGAGTTCACGTGTCGCAATGGTAAATGCCGTCACCGATTTCG
CGTGTACGCGGATTTTGAACAGGGGTACGTCATGCAGGCTCCTCAAGCGT
GCCCCCGGGAATGTCGGTCGAGCGAATTTGAGGAGGCGCCGGAGGCAGAC
GAGTGCACTGATTATCAGGAGATCAAGATTCAGGAGCAAATACAGAATCT
GAGGTTCGGCTCCATCCCACGCTCGATATTGGTCGCCCTTGAGGACGACT
TGGTTGACACTTGTCGTCCAGGGGACGACGTGGTCATCTCCGGGTGTCTC
ATGCGGCGTTGGCGGCCTGTCTGTAAAGACCGGCGCTGCGAGGTGGAGGT
TGTTTTGCGCGCTAACAGCGTGCGCCTGATCAGCAAACCTACTCTGTTCC
AAGGCGGTTTGGTTATGCGTGAGGAGAGCCGACAGGGCTTTATGCGCTTT
TGGGCGCATTATTACGATATAAGGGAGCCTCTTGTGGCGCGCAACATAAT
TGTCCGCTCGGTTTGTCCGCAGATATACGGCATGCTCGTCGTCAAGCTGG
CTATCCTTCTGACTATTATCGGTGGTGTGGAAATGGATGCAAAACATTGC
TCCACCAGCGCCTCAGACGGCAATACATCGGATCGGGATAAAGCCGCGGG
AGAGGACAAGTTTCGGGTCCGCAGTCATCCCCATCTCCTGCTAGTGGGCG
ATCCGGGGACGGGCAAGAGCCAATTTCTGCGCTTTGCGAGCCGCTTGGTA
CCTCGCTCAGTACTCACAACGGGGATAGGGACCACTAACGCAGGTCTAAC
ATGCAGTGCCGTCCGGGATGGGAAGGAGTGGGTTCTTGAAGCCGGCGCAC
TAGTACTGGCAGACCGCGGACTATGCTGCATCGACGAGTTTTCCTCGATT
CGTGAACACGACCGCACAGCGATCCACGAGGCTATGGAGCAGCAAACACT
TTCAATCGCAAAAGCTGGACTGGTGTGTAAGTTGAATGCACGGGCGTCTG
TTATCGCGGTGACGAATCCCAAGGTGAATCTTGGATCGGACGATGGTGGA
ACGGAAGTCGGTATGACAGACCTGACCGTCACCACGGCCATAAATGCCCC
TCTCCTTTCGCGCTTCGACCTTGTCCTCCTGCTCACGGATAAGTGCGGTG
AAGAGTGGGATGAAGCTGTTTCCACATTTGTGCTGAATGGGTCCATCTCG
CAGAAATGTGAGCACGAACGTGACAACAGGACCGCGTCCGCGAAAGAGAA
TCTCAGCACTTCGGCAAATCCTCAATCCAGCAGTCACGGAACAGGTTTCG
AGTCACCGACTGTGCCGTTTTGGACTCTTCAGCAATTACAAAACTACGTA
GCTTTTGTCAAAAGTACCTTCAACCCTGAGCTTTCTCAGGAAGCTATGAC
CGTACTAGAGTGCTATTATCAGGTACAACCATTCGAGACATCATAAATAC
CTTCAAATAGAGAATGTTTGATAGGTACTTTTCACATACCTGCATTACCA
CAGATGCAACGGACGTCGGACAATCGAAATGTGGCTTTAACAACAGTTCG
TCTCTTGGAAAGCCTCATCCGGCTTTCAGAGGCTCACGCTAGACTCATGT
GTCGAGACAGTGTGACGCTGCAGGACGCTGTTGTAGCTGTTTTTTGTGTG
GAATGCTGTCGCAAGTCGATTCCCAGTCTGGGGGCTTACAGAGATTATCA
TTATGATACCAAGGATCCCGAGAGAGATTATGAAGACATGCAGAGTGTAG
TGCTTCGGTCGCTGGGGTTGCGGATGCCGACTGTAACGGTGGGTGCGAAC
AGCTACATGAGTAGTACGGGTGATTACAACTGAAGAATTGATTGATGGTG
ATGACAACTGAAGAATTGATTGACGAATAGATACCACGACTGTACGTCAC
ATTCGTTAGAAAATTTCAATAATGTAAATTTGGAGATATAGAGGAGAAAT
ATGTAGATACAAGTAAAACATGAAATACACAGTGCCCTATTCGACTTTGT
ACAAGCTTGTACAGGTCTGTATCCACTGCTGTTGTGTTTCAATTTCTCC

protein sequence of rna1463

>rna1463-protein ID=rna1463-protein|Name=rna1463|organism=Nannochloropsis gaditana|type=polypeptide|length=401bp
MKGLAASSSLVAAVFMISKVVQAFIPRLDFPQTSVLITGTTSTRTKESGG
RDAVAHSPSDVVSSSSSIPLCAEVVLRRSFPNVEVAPGFLSAIRPNSKST
DTGRALIRAKAFANMAPRIIVSRGWNVLSEDFVYYSSATGPLDRAEYLGL
VAIMERALPDLRQDSSRFEVGADGTVLYVSQAVGTFTGQLQIGHDIHEGS
GLKYQGLKEVCVVAFNEDGQLQSLSAGLVVEEGSDEDEELVAAEALSGLL
KRLESHKQKLEMTPTGKSAREKIQQDIDNTQAKIEAFEKDSETVKVAHEA
GLGGLLGALGVCVPEAGDLSSALAGQGLDELFVMDDLDLMSVPTECETLL
EDKGPMTNAVCREKASRAHVHVVMSTAKQELHTPKMIHYLTLLICGVTNL
F

mRNA from alignment at CM002457.1:702300..703552+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1463 ID=rna1463|Name=rna1463|organism=Nannochloropsis gaditana|type=mRNA|length=1253bp|location=Sequence derived from alignment at CM002457.1:702300..703552+ (Nannochloropsis gaditana)
ATGAAGGGCCTCGCGGCGTCTTCTAGCCTTGTGGCCGCTGTCTTCATGAT
TTCCAAAGTTGTACAGGCCTTTATTCCCCGCCTTGATTTTCCTCAAACCT
CTGTGCTCATCACCGGCACGACTTCAACAAGGACAAAAGAAAGTGGTGGT
CGAGATGCAGTGGCGCATTCTCCGTCAGATGTTGTCTCAAGTTCCTCATC
CATACCTCTGTGTGCTGAAGTTGTATTGCGACGATCATTTCCAAATGTGG
AAGTCGCGCCAGGCTTTTTGTCCGCTATCCGTCCGAATAGCAAAAGCACC
GATACTGGTCGCGCGCTCATCCGCGCGAAGGCATTTGCGAATATGGCTCC
GCGTATCATAGTCTCTCGGGGTTGGAATGTGCTTTCCGAAGACTTTGTCT
ATTACAGCAGCGCCACAGGCCCTCTAGATCGTGCAGAATACTTAGGCTTG
GTCGCCATCATGGAGCGAGCTCTCCCGGACCTCCGGCAGGATTCCTCGCG
ATTTGAGGTCGGTGCAGATGGGACAGTCCTTTATGTCTCTCAGGCTGTGG
GTACTTTTACGGGTCAGTTACAAATCGGCCATGACATTCATGAGGGTAGT
GGCCTCAAATATCAAGGTCTTAAGGAGGTCTGCGTGGTGGCATTTAACGA
GGACGGGCAGTTACAAAGCCTTAGCGCaggcctggtggtggaggaaggta
gcgacgaggatgaggagttGGTAGCGGCCGAAGCACTTTCAGGCCTGCTG
AAGCGTCTAGAATCCCATAAACAGAAATTAGAGATGACACCTACAGGGAA
GTCGGCGCGGGAGAAGATTCAGCAAGATATTGACAACACGCAGGCAAAGA
TTGAGGCCTTCGAGAAGGACAGCGAGACAGTCAAGGTCGCACATGAagct
gggcttggaggccTACTCGGAGCGCTGGGAGTATGTGTTCCCGAAGCCGG
AGATCTTAGTAGCGCcttggcggggcaggggTTGGACGAGTTGTTTGTGA
TGGACGATCTGGACCTCATGTCTGTGCCTACGGAGTGTGAAACACTGCTG
GAAGATAAGGGTCCCATGACGTGACGAGAATAAAGTTGACGAAATTTGAA
TTGCAATTTGCCGACAGGAATGCTGTATGTCGAGAAAAGGCATCACGAGC
TCATGTGCATGTAGTCATGTCCACAGCTAAACAAGAATTGCATACGCCAA
AGATGATACACTATTTAACACTTTTAATTTGTGGAGTAACAAATTTGTTC
TAA

Coding sequence (CDS) from alignment at CM002457.1:702300..703552+

>rna1463 ID=rna1463|Name=rna1463|organism=Nannochloropsis gaditana|type=CDS|length=2412bp|location=Sequence derived from alignment at CM002457.1:702300..703552+ (Nannochloropsis gaditana)
ATGAAGGGCCTCGCGGCGTCTTCTAGCCTTGTGGCCGCTGTCTTCATGAT
TTCCAAAGTTGTACAGGCCTTTATTCCCCGCCTTGATTTTCCTCAAACCT
CTGTGCTCATCACCGGCACGACTTCAACAAGGACAAAAGAAAGTGGTGGT
CGAGATGCAGTGGCGCATTCTCCGTCAGATGTTGTCTCAAGTTCCTCATC
CATACCTCTGTGTGCTGAAGTTGTATTGCGACGATCATTTCCAAATGTGG
AAGTCGCGCCAGGCTTTTTGTCCGCTATCCGTCCGAATAGCAAAAGCACC
GATACTGGTCGCGCGCTCATCCGCGCGAAGGCATTTGCGAATATGGCTCC
GCGTATCATAGTCTCTCGGGGTTGGAATGTGCTTTCCGAAGACTTTGTCT
ATTACAGCAGCGCCACAGGCCCTCTAGATCGTGCAGAATACTTAGGCTTG
GTCGCCATCATGGAGCGAGCTCTCCCGGACCTCCGGCAGGATTCCTCGCG
ATTTGAGGTCGGTGCAGATGGGACAGTCCTTTATGTCTCTCAGGCTGTGG
GTACTTTTACGGGTCAGTTACAAATCGGCCATGACATTCATGAGGGTAGT
GGCCTCAAATATCAAGGTCTTAAGGAGGTCTGCGTGGTGGCATTTAACGA
GGACGGGCAGTTACAAAGCCTTAGCGCaggcctggtggtggaggaaggta
gcgacgaggatgaggagttGGTAGCGGCCGAAGCACTTTCAGGCCTGCTG
AAGCGTCTAGAATCCCATAAACAGAAATTAGAGATGACACCTACAGGGAA
GTCGGCGCGGGAGAAGATTCAGCAAGATATTGACAACACGCAGGCAAAGA
TTGAGGCCTTCGAGAAGGACAGCGAGACAGTCAAGGTCGCACATGAagct
gggcttggaggccTACTCGGAGCGCTGGGAGTATGTGTTCCCGAAGCCGG
AGATCTTAGTAGCGCcttggcggggcaggggTTGGACGAGTTGTTTGTGA
TGGACGATCTGGACCTCATGTCTGTGCCTACGGAGTGTGAAACACTGCTG
GAAGATAAGGGTCCCATGACGAATGCTGTATGTCGAGAAAAGGCATCACG
AGCTCATGTGCATGTAGTCATGTCCACAGCTAAACAAGAATTGCATACGC
CAAAGATGATACACTATTTAACACTTTTAATTTGTGGAGTAACAAATTTG
TTCTAAATGAAGGGCCTCGCGGCGTCTTCTAGCCTTGTGGCCGCTGTCTT
CATGATTTCCAAAGTTGTACAGGCCTTTATTCCCCGCCTTGATTTTCCTC
AAACCTCTGTGCTCATCACCGGCACGACTTCAACAAGGACAAAAGAAAGT
GGTGGTCGAGATGCAGTGGCGCATTCTCCGTCAGATGTTGTCTCAAGTTC
CTCATCCATACCTCTGTGTGCTGAAGTTGTATTGCGACGATCATTTCCAA
ATGTGGAAGTCGCGCCAGGCTTTTTGTCCGCTATCCGTCCGAATAGCAAA
AGCACCGATACTGGTCGCGCGCTCATCCGCGCGAAGGCATTTGCGAATAT
GGCTCCGCGTATCATAGTCTCTCGGGGTTGGAATGTGCTTTCCGAAGACT
TTGTCTATTACAGCAGCGCCACAGGCCCTCTAGATCGTGCAGAATACTTA
GGCTTGGTCGCCATCATGGAGCGAGCTCTCCCGGACCTCCGGCAGGATTC
CTCGCGATTTGAGGTCGGTGCAGATGGGACAGTCCTTTATGTCTCTCAGG
CTGTGGGTACTTTTACGGGTCAGTTACAAATCGGCCATGACATTCATGAG
GGTAGTGGCCTCAAATATCAAGGTCTTAAGGAGGTCTGCGTGGTGGCATT
TAACGAGGACGGGCAGTTACAAAGCCTTAGCGCaggcctggtggtggagg
aaggtagcgacgaggatgaggagttGGTAGCGGCCGAAGCACTTTCAGGC
CTGCTGAAGCGTCTAGAATCCCATAAACAGAAATTAGAGATGACACCTAC
AGGGAAGTCGGCGCGGGAGAAGATTCAGCAAGATATTGACAACACGCAGG
CAAAGATTGAGGCCTTCGAGAAGGACAGCGAGACAGTCAAGGTCGCACAT
GAagctgggcttggaggccTACTCGGAGCGCTGGGAGTATGTGTTCCCGA
AGCCGGAGATCTTAGTAGCGCcttggcggggcaggggTTGGACGAGTTGT
TTGTGATGGACGATCTGGACCTCATGTCTGTGCCTACGGAGTGTGAAACA
CTGCTGGAAGATAAGGGTCCCATGACGAATGCTGTATGTCGAGAAAAGGC
ATCACGAGCTCATGTGCATGTAGTCATGTCCACAGCTAAACAAGAATTGC
ATACGCCAAAGATGATACACTATTTAACACTTTTAATTTGTGGAGTAACA
AATTTGTTCTAA

Synonyms

Publications