EWM29211.1, cds1460 (CDS) Nannochloropsis gaditana

Overview
NameEWM29211.1
Unique Namecds1460
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:702300..703369 +
Alignment locationCM002457.1:703417..703552 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29211.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100007g118.6538.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:702300..703369 +
CM002457.1supercontigCM002457.1:703417..703552 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29211.1 vs. NCBI_GenBank
Match: gi|585111731|gb|EWM29211.1| (hypothetical protein Naga_100007g118 [Nannochloropsis gaditana])

HSP 1 Score: 818.535 bits (2113), Expect = 0.000e+0
Identity = 401/401 (100.00%), Postives = 401/401 (100.00%), Query Frame = 0
Query:    1 MKGLAASSSLVAAVFMISKVVQAFIPRLDFPQTSVLITGTTSTRTKESGGRDAVAHSPSDVVSSSSSIPLCAEVVLRRSFPNVEVAPGFLSAIRPNSKSTDTGRALIRAKAFANMAPRIIVSRGWNVLSEDFVYYSSATGPLDRAEYLGLVAIMERALPDLRQDSSRFEVGADGTVLYVSQAVGTFTGQLQIGHDIHEGSGLKYQGLKEVCVVAFNEDGQLQSLSAGLVVEEGSDEDEELVAAEALSGLLKRLESHKQKLEMTPTGKSAREKIQQDIDNTQAKIEAFEKDSETVKVAHEAGLGGLLGALGVCVPEAGDLSSALAGQGLDELFVMDDLDLMSVPTECETLLEDKGPMTNAVCREKASRAHVHVVMSTAKQELHTPKMIHYLTLLICGVTNLF 401
            MKGLAASSSLVAAVFMISKVVQAFIPRLDFPQTSVLITGTTSTRTKESGGRDAVAHSPSDVVSSSSSIPLCAEVVLRRSFPNVEVAPGFLSAIRPNSKSTDTGRALIRAKAFANMAPRIIVSRGWNVLSEDFVYYSSATGPLDRAEYLGLVAIMERALPDLRQDSSRFEVGADGTVLYVSQAVGTFTGQLQIGHDIHEGSGLKYQGLKEVCVVAFNEDGQLQSLSAGLVVEEGSDEDEELVAAEALSGLLKRLESHKQKLEMTPTGKSAREKIQQDIDNTQAKIEAFEKDSETVKVAHEAGLGGLLGALGVCVPEAGDLSSALAGQGLDELFVMDDLDLMSVPTECETLLEDKGPMTNAVCREKASRAHVHVVMSTAKQELHTPKMIHYLTLLICGVTNLF
Sbjct:    1 MKGLAASSSLVAAVFMISKVVQAFIPRLDFPQTSVLITGTTSTRTKESGGRDAVAHSPSDVVSSSSSIPLCAEVVLRRSFPNVEVAPGFLSAIRPNSKSTDTGRALIRAKAFANMAPRIIVSRGWNVLSEDFVYYSSATGPLDRAEYLGLVAIMERALPDLRQDSSRFEVGADGTVLYVSQAVGTFTGQLQIGHDIHEGSGLKYQGLKEVCVVAFNEDGQLQSLSAGLVVEEGSDEDEELVAAEALSGLLKRLESHKQKLEMTPTGKSAREKIQQDIDNTQAKIEAFEKDSETVKVAHEAGLGGLLGALGVCVPEAGDLSSALAGQGLDELFVMDDLDLMSVPTECETLLEDKGPMTNAVCREKASRAHVHVVMSTAKQELHTPKMIHYLTLLICGVTNLF 401          
BLAST of EWM29211.1 vs. NCBI_GenBank
Match: gi|299115546|emb|CBN75750.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 91.2781 bits (225), Expect = 5.184e-17
Identity = 75/237 (31.65%), Postives = 113/237 (47.68%), Query Frame = 0
Query:   87 PGFLSAIRPNSKSTDTGRALIR----AKAFANMAPRIIVSRGWNVLSEDFVYYSSATGPLDRAEYLGLVAIMERALPDLRQDSSRFEVGADGTVLYVSQAVGTFTGQLQIGHDIHEGSGLKYQGLKEVCVVAFNEDGQLQSLSAGLVVE-EGSDEDEELVAAEALSGLLKRLESHKQKLEMTPTGKS--AREKIQQDIDNTQAKIEA-FEKDSETVKVAHEAGLGGLLGALGVCVPE 315
            P FL  I      T T   L      A  F ++A  +++SRG NVL+EDF YYS  TG LDR  +L L   ++ A    R   + F V  DGTV Y  +      G L +G   +  S  K     ++C V+F++ G + S + GL+VE   + ED + VA   +  + KR+ + + K++     +S  A  K + DID  +  +EA  E+ +         G+ GL  A+G   PE
Sbjct:   37 PRFLDEIGHGETRTFTEEQLRNRLEVAHVFVSLANLVLLSRGKNVLAEDFKYYSPGTGRLDRESFLRLTKTLDVAFSTFRVTPTDFVVYKDGTVTYRRKFKAVHDGYLTVGDKTYPPSQTKVISDVDLCAVSFDDMGVVLSYAYGLMVEVVYAIEDPDAVA--EIEEIKKRVVNQQAKMKSLEGQESSIAYSKCKSDIDVMKLDMEALLERVNSAPNTEGLGGIPGLFAAVGAKFPE 271          
The following BLAST results are available for this feature:
BLAST of EWM29211.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111731|gb|EWM29211.1|0.000e+0100.00hypothetical protein Naga_100007g118 [Nannochlorop... [more]
gi|299115546|emb|CBN75750.1|5.184e-1731.65expressed unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1463rna1463Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications