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Properties
| Property Name | Value |
|---|
| Product | t-snare family protein |
| Orig transcript id | gnl|cribi|Naga_100013g77.9828.mrna |
| Orig protein id | gnl|cribi|Naga_100013g77.9828 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:378111..379863 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna146 ID=rna146|Name=rna146|organism=Nannochloropsis gaditana|type=mRNA|length=4491bp
ATGGCCGAGGTGGACGTGGAATTCGTGGACCACATCCCGGGGAAACTGAA
CGACCGGAAGACGCCTCTGGGCGAGTTGAACTGGATCTTCACCGCCATTA
CGGACACGATTGCCTGGAACACCTTGCCTTCGACCGTTTTTCAGTACCTC
TTCCGCCAAGACTTGCTTGTCGCCAGCCTGTTTCGCAATTTCCTCCTGGC
CGATCGGATCCTCCGCTCCTTCAATTGCACGCCCACCTCCATCCCCCGGC
TACCCTCCACGGCGCAGCATCCCCTGTGGCAGGCCTGGGACCTGGCGGCT
GAGTGCTGTCTGCACCAGCTTGTCGTGAACAGGAAGCCGAGCCTGGTCTC
CATGAGCTCGGCCGAAGCACGCTTGGTGGCCTCAGCCTCCGCAGGGCCAG
GATTCTATTCCACGGTGACCGCCTCCACCACCAATCCTTCCCCCTTTTCC
TCCACCTCGCCCCCCCCCGGCACCTCCACCTCCCTCTCCCATGCTCCTAC
CTCGGTCTCCTCGACAACCTTCTTTGCGGACCAGCTGACAGCCTTCGAGG
TATGGATCGAGTACACCACCATGGCACCCACCGGAGCCCCTCCGTCCAAG
CCCCCAGACCAGCTCCCCGTGGTGCTCCAGGTCCTCTTATCCCAAGCACA
TCGGCTCCGCGCCCTCCTTCTCCTCCGTCGCTTTCTCGATCTGGGCCCCT
GGGCTGTCAACCTGGCCCTCTCCGTGGGGATTTTCCCTTACGTTCTCAAA
CTCTTACAGAGCCCCGCCCCCGAACTCCGGCAAGTCCTCGTCTGCATTTG
GGCGAGAATACTTGCCTTTGACCCGTCTTGCCGCTCGGACTTGGTCAAGG
ACAATGCCTACTTGTATTTCATCGGGCATTTGTCCGGCGCGGACGTTCGA
CCTGAGCAGCGGGTATTGGCCGCTTTCATTGTCAGCGCCATCATGGACGA
GTCGCGCTCCGGGCAGCGGGACTGCTTGAAGAAAGGCGTGCACCGGACGT
GTGCTCATTTCTTGTTTTCGAAAGAAACCGAGGGCATGCCCGAGTTCAGG
CGCTGGTTATGCTTCTGTCTTGGTCGGTTGGCCTTTGATTACGTGGAAGG
CAAGGTCGCTTGTTTGCGGGAAGACATTCATTTACACCTTTTTGGCCTGC
TCGGCTCCCCACACGTCGCGGTGCGTGCGGCAGCTGTGCACACGCTGGGC
ACGTTCTTGGGGAGTGGCGGCGGACACCCGGGGGGAGGGGCAGGGAGGGA
GAGTGGAAGTGGGCAAGGACAGGGGCACAACAGCAGCAGCAGTTTGTCCT
CGATGTCTTCGCCTACCTCTGAGATGGGGACCTTAGGGAGCTCGCCGGGC
GGGGGGCGGTCGCCGTCGACCGGGCGGGCCGCATCTATTGACTTGGAAGC
AGCGCGGAAGACGGATGTGTCGGTGATTGGCCTTCCCATGCTTCGAGCCT
TCGACGACGTAAGTCCCACGGTCAGGCGGCAAGCAATCTTCGCGCTTTTC
CTGTTGGTGACGGACAGCACACATTTCCCCTATTTCGTGTGGGTGGCGCA
CGAGCTGACACGGTTCAACGCCGAGAAACAGCAGCAGTATCCCCGCGAGT
CTCAGATCAGAGGAGAGAGGAAATCTGGGCAAACGGATGGCAAAGGGACA
ATGCAGAAGTCTCGAAGCTGCGATTCGATTGCATCCTTGGATGCCTCGTC
CTCCACGTCCTCAATGGTAGGCTTGGTATTGGACGAGGAGGCCGAGAGCC
AGGGCCGCAAAGAGGATCGTGCCTTGGGGTTGTCGCCATCGCAGCAAAAA
GAAAGAGACGGTGAGAGGACAGGCAGCAGGAATAAAAATGACTGGGACAA
GGAAGCCCGGGACAAGGGGCAGAGGCTGTGGTGCCAAGCCTTGGCGGCGC
GTCTCAAGAGGAAAGCTGGGGAGATAGGCGAACACTATCTGCTCATTTGG
CTCGCGATACGACAAGTGCATCAAAAAGAGCCCTTTCCGCCTGTCGCAGA
CGTTGCTGGCCAGATCGTACACTTGGTCCACGAATGCTTGCTGGATATGA
ACCTAAATCCAAGCAAGAATGTGGCCTTCCCGGGTGCTTCCGCTCGTCCC
TTACGCTCCACCGCCTCCGCCATGACGTTATCCCCCATGGAGCTGCAACA
CCGACAAGAGCAAGCATCTGAGGAGCAGCCGCAGCCACGACACGATCATT
TGCACCATGAAAAGCGAGAACAAAATGAAATCGACGCGCAACAGCAGCAA
GGACGGCAAGAGAGCTCGCTCCTCGCCTCTCCTGGACTCTCTTCAACCTC
TCATCCACCGCGGGTTCCCCCTCGCCCTCCCCACCCGTCCGGCATCCCAC
CACGCAGCCCCCCTACCTCGGCAAATCCGAATGCCTCCTCCTCCCAGAAA
CAACAGCTTCGATCTCGGCAGCAACAGCAACATACATACCGTGGGCATGA
CGGCCACTACCGGCTGTCGTCAGGAAAACATGTCGTGAATAATCTGCCGA
CTTGTCCTGCCCCCACCCATCCTTCCTCGTCAAACCGCGTTCCTCTGGAG
CGTGCCGTCTCGGCGCACGAGCTTGCCCGTCTGCCTACTCCCCAGGGGGA
CTATGCCCGCCCCCCTCCGACGGGTCTGCGTGAAGCTGCCGGGCGCAGCA
CCGCTTCGCCCTACGGAGGCACAAATCACCTGCATGCAGGCCTCGGAAAC
AGCACCACGACTCCCAGTGGTCCGTCAGATAGACCCATTCCAGGTGGAGG
AGTCAGCACGAGACCGTCAGCGGCCTCCTCCCTTTTCCAATCTGCTTCGG
GAACGGGGCCAGGGGGAAACACCCTAAAGGGGAAAGGGTCGGAAGAGGTT
TTCGAGGGTGGCAGCTACGAGGCCAGAGGCTTGAAGCAGTCGAAGGGGGG
GCTTATGGGGAGGGCAGAGATGCCGGGCTCAGTGCCCTTGATCCGCCACG
AATCTCTGGCGGCCCCTGACGACTCCACAGCCATGGGACAAGCCTCCTCC
GCCCGCTTTTCCTCGGCCACGGCCACAGCCCTGGCCGAGTCCCCCTCTTT
GCAATGGCTACGTGTCCAGTATCAAAGGACGAACATATACGCCTGGAGCA
AGAAGCAGCTCTCCGCCCCCGCTGCCCTCTCTGCGGTGGAAGGTCCCGGA
GGGGAGGAAGACGACCCGCTGTCACCGGAAGGACAGGTGGCGCTCTATCG
ACGGTCACGGAATCAGCGGGTGCTGGAGGAGGCCAAGGCCCTTACTCTGA
AATGCACGGGGGTCCTGGGCATGCCGGAAGAGGAGGAGGACTCGGACCTG
TACTTCATGTTGGGCGGGATCGATGCACTGCTGGCAGCGCAACGCGAGGG
GATGGATGGCGCGGCTGGGGCTCGAAAAGGTAACGTGAAGAAGACCGCGC
TAACGAAGAGCATGGGAGATACTGTAAAGCGTAAGAACCAGGTGCTTCGA
CTTCAGCAAAAAGTTGTATTTGAAAGCGACGCACAAATGACGTCGCAACT
GTTGTTCCACCCCTTCGAGCCGCTTTTGATTGCCTCGGACGACCACGCCA
ACCTCCGGGTATGGAATCACGAGGACGGGAAGAAGCTGGGCGTGTTCAGG
AACGAGCCGATTCCTAGCAAGGCATCGAGGATCACAAGCCTGGCTTGGTT
GAACGAGGCAACCTCCTCCCTCTTGCTCACCGGGACGGATGAGGGGGTCG
TCCGCGTGTGGAGCGGGGTGGTCCCGACGGGGGCGGACTGGGTTCCCCCC
CGTCTGGCGACAGCCTTTTTCGCCCACGCACTCGTGGGGCGTGGCTTCGG
CGTTGTCACAAAATGGGTCCACGGTGCAGGCCTCCTCCTGACGGGGGGAA
GCTCAGACCGGCTTCGGGCCTGGGACTTGGAGAGGGAGCAGATGGTCAGG
GAGTGGGAGACGGGTGGGGAGGCTTGTGTGACATGCCTGGCTGCCAGCAC
GCCTCACGGAGGGGCGGGCGGGCGGGACTCAGGGGGTAACGGGGCGCGTG
GATCGCAAATCTCATCCTCGCCTCTGGTGGTTGCCGGTTTCGGTGACGGC
AAGGGGAAAATCTGGGACGTACGGGTGGATAAATGCGTTGGGGTCCTCAC
GGAGCATCAGCAATGGCTGGTGCTCACTGATTTTGTCAAAGGGGACCGAG
AATTGCTCACAGGCTCCTTAACTGGTGAAGTTCGCGCCTGGGATCTGCGA
AGGCTGAAGACTTCTCTTCGTACGATGGACGTGGGCAAAGGTCCCATGAC
AGCCATGGCGGCTCACCAGACCTGTCCTCTCCTGGCATCGGGATCTTACA
ACCAGTTCATCAAGATGTTGACGCTCGAGGGGGATACTCTCAGCGTCATC
CGCTATCACGACGGGATCCTTGGCCAACGGATCGGTCCCGTGGCAACTTT
GGCGTTCCACCCTTGTAAACTTGTTTTGGCGGCTGGGACTACAGACTCCT
TAACTAGTATTTATACAGCTCATTTTCCTCAAGCTAGCTAA back to topprotein sequence of rna146 >rna146-protein ID=rna146-protein|Name=rna146|organism=Nannochloropsis gaditana|type=polypeptide|length=331bp
MNGFRFPNATKRMNDRLAELRAKGGGTPSDSVGIDMTRLQGRGDGAGAAP
SAAVTNASQPQYMNDFFTDVEATKEDINAIKEAIRRMSGIHQEAFLATTG
PREAKLSQELNAVIQETNPKAARAKKMLSKMKDETTKLRQDSRCTPSQLR
IRDNLTNTLTRKFVDVMKDYQNAQTKYKAFIKDKVQRQVQIVKPDASTEE
IEAVFKSGGGGDQVITQAILKGANESIRNVYQNVADKYQDVLTLEASIAE
LHQMFLDFALLVEQQGEMLDQIEYQVKGAANYVEEGTLQVQGAIANAKKA
RKYQCCMLVCIMVLVGILVLVLFVFKKQIGL back to topmRNA from alignment at CM002455.1:378111..379863+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna146 ID=rna146|Name=rna146|organism=Nannochloropsis gaditana|type=mRNA|length=1753bp|location=Sequence derived from alignment at CM002455.1:378111..379863+ (Nannochloropsis gaditana)
ATGAACGGATTTCGGTTCCCGAATGCAACTAAACGGTAAACGACAAGGCG
TGTTGGGTTTGATCGTTCGCGGCTCTTCGCGTGCCATTCATCATATTTCT
TGAAGTTAAAGTGATGCAGTATTTTTTATGACCTAAAGGAATACAGCAGT
TTTCATGAGTTCCTGTTTTAAAATCACAAAACCACAAAATCGCAAAATCA
CCAAAAAATGGTGCAACTGTTATTATAAATGTATCACCCAGCTTTATCAA
ACCTCGGGCACAATACCAGAACCCTACGCAGTAAGAAAAAAGGTCCATCT
ACTTTCCACGAGGCTGCATACGCTGGAAGTCTTTTTCTAACAGGGCTAGA
AGCGGACTGTGTTCTCTTTCTCGAAGAATCCTTCAGGATGCATAAAGCAT
CCCATTCATATACGATGTTATCACGTAGAGAAGAAAAATGTAATAATTCA
GGGGTGTACGGCCATCACCAAGGGAAAGGAACATAGAAAATATGCGGCGC
AGATTCCAAGAACAAAgccagcagcagctgcaTGGGCCAGGCCGCTCGCT
TGAAAAGACGGCTTCGCTGcgtcccgcccctcctcgtgcGACCCCCCCGT
TGATGCCTTCCCACATTAAATGATAATGTTTTTCAACATAACAGGTGAAG
GATGAACGACAGGTTGGCCGAGCTTCGGGCAAAGGGCGGCGGGACACCCT
CAGACAGTGTGGGAATCGACATGACGCGTCTTCAGggccgaggagatggt
gCTGGAGCAGCGCCGTCGGCTGCCGTAACTAATGCAAGCCAGCCACAATA
CATGAACGATTTTTTCACTGACGTGGAAGCAACAAAGGAGGATATTAATG
CCATCAAAGAGGCAATTCGACGAATGAGTGGCATCCATCAGGAAGCTTTT
TTGGCCACGACGGGACCGCGAGAAGCGAAGCTAAGTCAGGAACTTAATGC
CGTCATCCAAGAGACGAATCCCAAGGCTGCGCGAGCGAAAAAAATGCTCA
GCAAGATGAAAGATGAAACCACAAAGCTGCGACAGGATTCTCGGTGCACT
CCGTCCCAGCTGCGAATACGGGACAATTTGACCAACACTTTGACCAGAAA
GTTCGTGGACGTCATGAAGGATTACCAAAACGCACAGACAAAGTACAAGG
CGTTCATCAAAGATAAAGTCCAACGTCAGGTCCAGATCGTCAAGCCTGAC
GCCTCAACTGAGGAGATCGAGGCGGTGTTCAagtcaggaggaggggggga
ccaGGTTATAACACAAGCCATCTTAAAGGGTGCGAACGAGTCAATACGAA
ACGTTTATCAGAATGTAGCGGATAAATACCAGGACGTGTTGACCTTGGAA
GCGAGCATCGCGGAGCTACACCAAATGTTCTTGGATTTTGCATTGCTTGT
GGAGCAACAAGGCGAAATGTTGGACCAAATCGAGTATCAAGTCAAAGGGG
CGGCCAActacgtggaggagggaactCTGCAGGTGCAGGGTGCCATTGCC
AACGCGAAGAAGGTGGGTGTAAATGCAGTCAATCATATTGCATACTCTAT
GTTTCTCTGTCCGCTGAGTGAATTGTCTGGTGGGATAATTTCGAACCCTC
TTCCAAATTATGTTATCGCTCACTGCGAGCTCCTGACGTTTCCTCCTGAC
ACAGGCGCGGAAATATCAATGCTGTATGCTTGTCTGTATCATGGTACTGG
TTGGGATACTGGTTTTAGTCTTGTTCGTATTTAAAAAGCAAATTGGTCTG
TAG back to topCoding sequence (CDS) from alignment at CM002455.1:378111..379863+ >rna146 ID=rna146|Name=rna146|organism=Nannochloropsis gaditana|type=CDS|length=2988bp|location=Sequence derived from alignment at CM002455.1:378111..379863+ (Nannochloropsis gaditana)
ATGAACGGATTTCGGTTCCCGAATGCAACTAAACGGATGAACGACAGGTT
GGCCGAGCTTCGGGCAAAGGGCGGCGGGACACCCTCAGACAGTGTGGGAA
TCGACATGACGCGTCTTCAGggccgaggagatggtgCTGGAGCAGCGCCG
TCGGCTGCCGTAACTAATGCAAGCCAGCCACAATACATGAACGATTTTTT
CACTGACGTGGAAGCAACAAAGGAGGATATTAATGCCATCAAAGAGGCAA
TTCGACGAATGAGTGGCATCCATCAGGAAGCTTTTTTGGCCACGACGGGA
CCGCGAGAAGCGAAGCTAAGTCAGGAACTTAATGCCGTCATCCAAGAGAC
GAATCCCAAGGCTGCGCGAGCGAAAAAAATGCTCAGCAAGATGAAAGATG
AAACCACAAAGCTGCGACAGGATTCTCGGTGCACTCCGTCCCAGCTGCGA
ATACGGGACAATTTGACCAACACTTTGACCAGAAAGTTCGTGGACGTCAT
GAAGGATTACCAAAACGCACAGACAAAGTACAAGGCGTTCATCAAAGATA
AAGTCCAACGTCAGGTCCAGATCGTCAAGCCTGACGCCTCAACTGAGGAG
ATCGAGGCGGTGTTCAagtcaggaggagggggggaccaGGTTATAACACA
AGCCATCTTAAAGGGTGCGAACGAGTCAATACGAAACGTTTATCAGAATG
TAGCGGATAAATACCAGGACGTGTTGACCTTGGAAGCGAGCATCGCGGAG
CTACACCAAATGTTCTTGGATTTTGCATTGCTTGTGGAGCAACAAGGCGA
AATGTTGGACCAAATCGAGTATCAAGTCAAAGGGGCGGCCAActacgtgg
aggagggaactCTGCAGGTGCAGGGTGCCATTGCCAACGCGAAGAAGGCG
CGGAAATATCAATGCTGTATGCTTGTCTGTATCATGGTACTGGTTGGGAT
ACTGGTTTTAGTCTTGTTCGTATTTAAAAAGCAAATTGGTCTGTAGATGA
ACGGATTTCGGTTCCCGAATGCAACTAAACGGATGAACGACAGGTTGGCC
GAGCTTCGGGCAAAGGGCGGCGGGACACCCTCAGACAGTGTGGGAATCGA
CATGACGCGTCTTCAGggccgaggagatggtgCTGGAGCAGCGCCGTCGG
CTGCCGTAACTAATGCAAGCCAGCCACAATACATGAACGATTTTTTCACT
GACGTGGAAGCAACAAAGGAGGATATTAATGCCATCAAAGAGGCAATTCG
ACGAATGAGTGGCATCCATCAGGAAGCTTTTTTGGCCACGACGGGACCGC
GAGAAGCGAAGCTAAGTCAGGAACTTAATGCCGTCATCCAAGAGACGAAT
CCCAAGGCTGCGCGAGCGAAAAAAATGCTCAGCAAGATGAAAGATGAAAC
CACAAAGCTGCGACAGGATTCTCGGTGCACTCCGTCCCAGCTGCGAATAC
GGGACAATTTGACCAACACTTTGACCAGAAAGTTCGTGGACGTCATGAAG
GATTACCAAAACGCACAGACAAAGTACAAGGCGTTCATCAAAGATAAAGT
CCAACGTCAGGTCCAGATCGTCAAGCCTGACGCCTCAACTGAGGAGATCG
AGGCGGTGTTCAagtcaggaggagggggggaccaGGTTATAACACAAGCC
ATCTTAAAGGGTGCGAACGAGTCAATACGAAACGTTTATCAGAATGTAGC
GGATAAATACCAGGACGTGTTGACCTTGGAAGCGAGCATCGCGGAGCTAC
ACCAAATGTTCTTGGATTTTGCATTGCTTGTGGAGCAACAAGGCGAAATG
TTGGACCAAATCGAGTATCAAGTCAAAGGGGCGGCCAActacgtggagga
gggaactCTGCAGGTGCAGGGTGCCATTGCCAACGCGAAGAAGGCGCGGA
AATATCAATGCTGTATGCTTGTCTGTATCATGGTACTGGTTGGGATACTG
GTTTTAGTCTTGTTCGTATTTAAAAAGCAAATTGGTCTGTAGATGAACGG
ATTTCGGTTCCCGAATGCAACTAAACGGATGAACGACAGGTTGGCCGAGC
TTCGGGCAAAGGGCGGCGGGACACCCTCAGACAGTGTGGGAATCGACATG
ACGCGTCTTCAGggccgaggagatggtgCTGGAGCAGCGCCGTCGGCTGC
CGTAACTAATGCAAGCCAGCCACAATACATGAACGATTTTTTCACTGACG
TGGAAGCAACAAAGGAGGATATTAATGCCATCAAAGAGGCAATTCGACGA
ATGAGTGGCATCCATCAGGAAGCTTTTTTGGCCACGACGGGACCGCGAGA
AGCGAAGCTAAGTCAGGAACTTAATGCCGTCATCCAAGAGACGAATCCCA
AGGCTGCGCGAGCGAAAAAAATGCTCAGCAAGATGAAAGATGAAACCACA
AAGCTGCGACAGGATTCTCGGTGCACTCCGTCCCAGCTGCGAATACGGGA
CAATTTGACCAACACTTTGACCAGAAAGTTCGTGGACGTCATGAAGGATT
ACCAAAACGCACAGACAAAGTACAAGGCGTTCATCAAAGATAAAGTCCAA
CGTCAGGTCCAGATCGTCAAGCCTGACGCCTCAACTGAGGAGATCGAGGC
GGTGTTCAagtcaggaggagggggggaccaGGTTATAACACAAGCCATCT
TAAAGGGTGCGAACGAGTCAATACGAAACGTTTATCAGAATGTAGCGGAT
AAATACCAGGACGTGTTGACCTTGGAAGCGAGCATCGCGGAGCTACACCA
AATGTTCTTGGATTTTGCATTGCTTGTGGAGCAACAAGGCGAAATGTTGG
ACCAAATCGAGTATCAAGTCAAAGGGGCGGCCAActacgtggaggaggga
actCTGCAGGTGCAGGGTGCCATTGCCAACGCGAAGAAGGCGCGGAAATA
TCAATGCTGTATGCTTGTCTGTATCATGGTACTGGTTGGGATACTGGTTT
TAGTCTTGTTCGTATTTAAAAAGCAAATTGGTCTGTAG back to top
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