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Properties
| Property Name | Value |
|---|
| Product | syntaxin 6 |
| Orig transcript id | gnl|cribi|Naga_100007g127.6544.mrna |
| Orig protein id | gnl|cribi|Naga_100007g127.6544 |
| Gene | SNR15 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:676939..679009 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1455 ID=rna1455|Name=rna1455|organism=Nannochloropsis gaditana|type=mRNA|length=2116bp
GTAGCGACAGCTGCTCCAGCAGCCCGATTTATTCATAGTCTCAGCTTCAT
TAGAGCCTAATATGGAGCTTGAATATCATGCCCTCGTAAAACGGTACGCC
AAAAGTGGCGCCGCAAGATCTCATTTACCATTGAGTGCGGCTGCGGAGAA
TGCTGAGGAAAGCAAGGTAGCAGAGGGCGTCAATGGAGAAGGTGATGCAG
GGCACGGGACCACAGAGAGCGCGGGAAGATCAGAAGAGGCAGCAGGGGCG
GGCATAGGTCTGGACGCGAAGGGCTTGGAGGGTCATGCGGACGCGACGCT
CTACGTCAGGCCCTTTTCCTCGACGGTCCCCCGTGCTCCCCTAGAGAAGC
TGCTGCGGGAGCGCGGAGGGCCCTTTGTCCGATTCCTCCTCTCAGACCCC
GCCAAAAGTACTTACTGCAACATGCGATCAGCGTGGCTAGTGTATGCCAC
AAAGGAGCAGGCAGATTCTGCACGTCAGACACTTCATAATACCGAGGCAG
AGCATCCTCTGGAGGAGCAGGTGCGCGCAGGCCAGCAACCCCCTCCGCCG
GACTACTTTCGACCCTTCACTCTGCAGCTGTCCGCGCATAACGGGAAGCG
AACGGTACCAGTGCCTCTCGACCTCTCCGATCCCAAGCATCTCGAAAAGG
ATGCGACACAGGCTTTTGCGCTGGCTCAAGCACTCGATCGAGAGCGGGGT
CTGGACGGAGAAGGACTGGAGGCAGTATTGAGTGCGCCGGCAGTTAAAGC
GGAGCTTGAGCGGCGAAACATGTCTTTTCGCCTAGATGTGGTGATGGCAT
ACTTGCGGCGGGTACACTTCTTGGTTTTTTATGGCGGCGATGAGTTTAAA
GATGAGGGTGATCTCCTGTTTTCAGCGCCTCAACTTTACAAGCGCGTGGA
GCCATTCAAGCCCTCAGAAAAGGATGAAAAATCATCGGGAAACGTTGACG
AGTCTGGTGTCATATCAAGCGAGTGGACCAAGAGCATGGATGGCAAGGTC
TGCAAGTTGGTGGCTGCGGTTCAAGAAGGCTCACGATTGAAGGGGCTTGA
CGAAGAGGCGCAGACTCAAAGAGACGCGGAAGAGAAGGCCAAACAAAAGT
GGCTGGCGGAAAACATGTCGAATGAGGACGAAGGGCGGTGGCGATGCGGG
GCAGAAGGGTGCACGAAACTCTTCAAGAGCAGTGAGTTTCTGCAAAAACA
CCTGCTCCTGAAGCACGGTGGGGGAGTGGAGGAAGCGCTGCGCATGGTCC
GCACAACGATTGTACGCTCGGCGTTCGAAGCAGACCAAGAGAAACCGTTA
CCGCCTGTGCAGGTTGATAAAGGCAGCAATGTCCTGAAGGCCGTTCCCGT
CGGCGAAATCTTAAGCGAGGTAGCTGCCGTTTTGGGCAAGGATATGTCCA
GTTGGAGACGACTCATTGAGGAAAGCTCTCGTCGCCGTGCGCGTGCAAGT
GGTGCAGGAGGTGGTGCGGGCGCGTATCGTGGGCGAGGGCATTATGGTCC
TCGGTCGATACCTGGCGTAGGTGTAGGCGGGGCGTCGGAAACAGGCCCTC
TAGGACTACACGGGGCTGTTACCGCTCAGGAAGCCCAACCTCCTCGCGTG
AGCAAGAACTACAAGGACATCGACGTCCCAAAATCTACCTTACTGACAGT
AGATTACGGTGATGTGGCCATTCCGCCCCCTCCTAAGCGAAGGCGCAAAA
AAGGTGCACCTTCTGCACCGGAAGTCAGTGGCCCATAGCTGAGCAGATAC
CCTGGTTGGAATGATGAACTAAAAGCAGCTCCATCAGGAAACTTTCCGTC
ACGGTTCAGCCGAGACAAGACTCGGCCACTCATGTCTAAAAGGACGGCGG
CCACGTTTTTCGCTTTCGAAATGAGCGCACCTGAGCACTCCCGTATCATG
GTAGTCACGCAGTCGGAAATGGAAAAGAAAGAAAGACTCCTTGCTTTTGC
GCTTGACGAGGAGTTGGAGGTGAATTTCTCTCCATCAGATTTGGTAGGGC
GTCAGGCATAGGGCCGCGGAAACGCTTTGCATGATATATAGGATATTTCA
TGAGATAGCATGGCCTGAGGTGTGCTCTACGACTCGAAAAAATATTGAAG
GACCCAGGACTTGTGT back to topprotein sequence of rna1455 >rna1455-protein ID=rna1455-protein|Name=rna1455|organism=Nannochloropsis gaditana|type=polypeptide|length=181bp
MAQDPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLC
REIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLV
KIWNNLESDYVKNKMSGDRRDVSMSVWAYLQRIAKTGKTLLLSRITSSPV
GHSMKARRVTGLEGAVSGRTTTLRSSARGNT back to topmRNA from alignment at CM002457.1:676939..679009+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1455 ID=rna1455|Name=rna1455|organism=Nannochloropsis gaditana|type=mRNA|length=2071bp|location=Sequence derived from alignment at CM002457.1:676939..679009+ (Nannochloropsis gaditana)
CGACAAGACCGGACGACCACGAGCTTGTTCGCACCTCTCAAAATGGCACA
GGACCCATTTTTTGCAGCTCGAGAGTAAGTCATGGGGCTGGGTCGTGGTC
ATTGACTTGGAAGCTTTAATTATAGTTTGCAAATTTCGAGTCCTTGATCG
AAATCATCGACAAATTAAATCACTTGGAGACGGTTGTTCGTCCCATTGTC
AGTTTAGTGATCGTTGTCGGCTTTAAAAACGAGGAGATGAGGGGCCCATT
CCGGGTCGTCGCCCGCTTGGTGCTACATGTCTTTACGTGACAACATGAGC
CTCCTTCAGACGATGACTTTGGGTAGGGAGGCTTTTTAAAACTTCGTGTC
ACACTACAACTATAGCCATGCAGGAGTGTGAaattttttccctctcactG
TTGTAAATTCAAATCACGTTACGACACGATTTCCTTCAGGGAGCTGCGCA
ACCGGGTAGATTACATACAGACTCAACATGAGAACTTTCTCCGACTTCTA
CAAACAACCAACACGGCTCCGGACTTATCCTGTAGAGATCTTCGAGACTG
TAAGTTACTAAGAGCGCTGTCAATAGACTGTATTGGGTCGGGCGCTGACC
ACTTATCCTTCTGCGCTCGCAATTCTCAGTCACACTGGTATACATCCACA
TTTTAAATTCTTTCTCTATATAGCGCTGTGCCGAGAAATTGAAGCTGCGG
AAAATCAGTGCCGTGAATTGGAGAAAGTGGTGGCAGTCGTCGAGAAAAAT
CGCCAGCGCTTCCGCCATATCGATAATGTACGTGATGAGGAACGTTTAAA
GTGTCTGTTTCAGGGCTTTACAGATTTAAACTTCGTTAAACCACAAATTA
CAGCACGAAATTGGGCAGCGCAGGGCTTTTGTCACCAAAATGAAGCAATC
ACTCGTCAAAATCTGGAATAACTTAGAAAGCGATTACGTGAAGAACAAGA
TGAGCGGCGACCGGAGGGATGTGAGTATGTCTGTGTGGGCTTACCTACAA
CGAATTGCGAAGACGGGGAAAACCTTACTACTTTCGCGCATTACCTCCAG
CCCAGTCGGCCATTCGATGAAGGCGCGGAGGGTCACAGGACTGGAAGGAG
CGGTAAGCGGGCGAACGACTACATTGAGGAGCAGCGCTCGAGGCAACACG
taggtggaggacgggcgggccCCATGTTTCGCATTTATGATTCTAGCACT
GTTCACTGGTGCCATCTGAACTTTATTTTTTCGCATTCCCGTCCTATCTG
CGCGGTGTCCAGTTGATGCTTCGTGAGCAGGATGaagggctggaggagct
AGGCACAGCTGTCGACAGGGTGGGACGTATGGCGGATGCAATGAACCAGG
AGCTGAACGCGCAAAATCGAATGTTGGGCGatttggaggtggaagtggaa
AATACGAACGAGCAAATGAGTTTCGTTATGGGTAAACTAAGCAAGCTCCT
GAAAACCAAAGGTACTTGACTTCCCCATAAAGCGGACGACGGCGGGCAAA
TTTTTCAGGTCTCTGTGGTCATAGCAGTAGATATTCTTTCTGAATATCCT
AACCCCCTCTCCCGACCCTACTCATCCTTTTTGGTCTCTCTTCTGGCCAC
TATAGACAAATATCAGTTGTGGCTCATTATCGTTTTGACCGTGGTGCTGA
TCGTCCTGATTCTCCTGACCATCTATGTGTAAGGGcgcctctccgccccc
tgcTGGGCCACCAGCTGGTCATGTGTGGGGCAGCGCTTCTCGTAAGCTTG
GAAGACATAGGAAGTCAAGGGGTATACACCGTCATGATGATCGGGTGCAT
GTCACCGCTCCACGCACTTTCATCGATGGTCAAGTTCAGAAATGGACATG
ATTGTACAGGGAGGGTTGAATATGCACTCGAGAAGAGGCATTACCCTTCA
TGGCTACTTCAGCATGTAATAAGGCATATTGCGTGTGTTGTGCATGCAAC
TTCTATCGATCGCTgtaattttctttttttttttaaataagATGTTGCAC
TGACGAACACAACGAAAGCGGCTTGTTGATTTTAGCAATTCGCTGCGATC
GGCGGCAAGGGTGTAGGTTTG back to topCoding sequence (CDS) from alignment at CM002457.1:676939..679009+ >rna1455 ID=rna1455|Name=rna1455|organism=Nannochloropsis gaditana|type=CDS|length=2730bp|location=Sequence derived from alignment at CM002457.1:676939..679009+ (Nannochloropsis gaditana)
ATGGCACAGGACCCATTTTTTGCAGCTCGAGAGGAGCTGCGCAACCGGGT
AGATTACATACAGACTCAACATGAGAACTTTCTCCGACTTCTACAAACAA
CCAACACGGCTCCGGACTTATCCTGTAGAGATCTTCGAGACTCGCTGTGC
CGAGAAATTGAAGCTGCGGAAAATCAGTGCCGTGAATTGGAGAAAGTGGT
GGCAGTCGTCGAGAAAAATCGCCAGCGCTTCCGCCATATCGATAATCACG
AAATTGGGCAGCGCAGGGCTTTTGTCACCAAAATGAAGCAATCACTCGTC
AAAATCTGGAATAACTTAGAAAGCGATTACGTGAAGAACAAGATGAGCGG
CGACCGGAGGGATGTGAGTATGTCTGTGTGGGCTTACCTACAACGAATTG
CGAAGACGGGGAAAACCTTACTACTTTCGCGCATTACCTCCAGCCCAGTC
GGCCATTCGATGAAGGCGCGGAGGGTCACAGGACTGGAAGGAGCGGTAAG
CGGGCGAACGACTACATTGAGGAGCAGCGCTCGAGGCAACACTTGAATGG
CACAGGACCCATTTTTTGCAGCTCGAGAGGAGCTGCGCAACCGGGTAGAT
TACATACAGACTCAACATGAGAACTTTCTCCGACTTCTACAAACAACCAA
CACGGCTCCGGACTTATCCTGTAGAGATCTTCGAGACTCGCTGTGCCGAG
AAATTGAAGCTGCGGAAAATCAGTGCCGTGAATTGGAGAAAGTGGTGGCA
GTCGTCGAGAAAAATCGCCAGCGCTTCCGCCATATCGATAATCACGAAAT
TGGGCAGCGCAGGGCTTTTGTCACCAAAATGAAGCAATCACTCGTCAAAA
TCTGGAATAACTTAGAAAGCGATTACGTGAAGAACAAGATGAGCGGCGAC
CGGAGGGATGTGAGTATGTCTGTGTGGGCTTACCTACAACGAATTGCGAA
GACGGGGAAAACCTTACTACTTTCGCGCATTACCTCCAGCCCAGTCGGCC
ATTCGATGAAGGCGCGGAGGGTCACAGGACTGGAAGGAGCGGTAAGCGGG
CGAACGACTACATTGAGGAGCAGCGCTCGAGGCAACACTTGAATGGCACA
GGACCCATTTTTTGCAGCTCGAGAGGAGCTGCGCAACCGGGTAGATTACA
TACAGACTCAACATGAGAACTTTCTCCGACTTCTACAAACAACCAACACG
GCTCCGGACTTATCCTGTAGAGATCTTCGAGACTCGCTGTGCCGAGAAAT
TGAAGCTGCGGAAAATCAGTGCCGTGAATTGGAGAAAGTGGTGGCAGTCG
TCGAGAAAAATCGCCAGCGCTTCCGCCATATCGATAATCACGAAATTGGG
CAGCGCAGGGCTTTTGTCACCAAAATGAAGCAATCACTCGTCAAAATCTG
GAATAACTTAGAAAGCGATTACGTGAAGAACAAGATGAGCGGCGACCGGA
GGGATGTGAGTATGTCTGTGTGGGCTTACCTACAACGAATTGCGAAGACG
GGGAAAACCTTACTACTTTCGCGCATTACCTCCAGCCCAGTCGGCCATTC
GATGAAGGCGCGGAGGGTCACAGGACTGGAAGGAGCGGTAAGCGGGCGAA
CGACTACATTGAGGAGCAGCGCTCGAGGCAACACTTGAATGGCACAGGAC
CCATTTTTTGCAGCTCGAGAGGAGCTGCGCAACCGGGTAGATTACATACA
GACTCAACATGAGAACTTTCTCCGACTTCTACAAACAACCAACACGGCTC
CGGACTTATCCTGTAGAGATCTTCGAGACTCGCTGTGCCGAGAAATTGAA
GCTGCGGAAAATCAGTGCCGTGAATTGGAGAAAGTGGTGGCAGTCGTCGA
GAAAAATCGCCAGCGCTTCCGCCATATCGATAATCACGAAATTGGGCAGC
GCAGGGCTTTTGTCACCAAAATGAAGCAATCACTCGTCAAAATCTGGAAT
AACTTAGAAAGCGATTACGTGAAGAACAAGATGAGCGGCGACCGGAGGGA
TGTGAGTATGTCTGTGTGGGCTTACCTACAACGAATTGCGAAGACGGGGA
AAACCTTACTACTTTCGCGCATTACCTCCAGCCCAGTCGGCCATTCGATG
AAGGCGCGGAGGGTCACAGGACTGGAAGGAGCGGTAAGCGGGCGAACGAC
TACATTGAGGAGCAGCGCTCGAGGCAACACTTGAATGGCACAGGACCCAT
TTTTTGCAGCTCGAGAGGAGCTGCGCAACCGGGTAGATTACATACAGACT
CAACATGAGAACTTTCTCCGACTTCTACAAACAACCAACACGGCTCCGGA
CTTATCCTGTAGAGATCTTCGAGACTCGCTGTGCCGAGAAATTGAAGCTG
CGGAAAATCAGTGCCGTGAATTGGAGAAAGTGGTGGCAGTCGTCGAGAAA
AATCGCCAGCGCTTCCGCCATATCGATAATCACGAAATTGGGCAGCGCAG
GGCTTTTGTCACCAAAATGAAGCAATCACTCGTCAAAATCTGGAATAACT
TAGAAAGCGATTACGTGAAGAACAAGATGAGCGGCGACCGGAGGGATGTG
AGTATGTCTGTGTGGGCTTACCTACAACGAATTGCGAAGACGGGGAAAAC
CTTACTACTTTCGCGCATTACCTCCAGCCCAGTCGGCCATTCGATGAAGG
CGCGGAGGGTCACAGGACTGGAAGGAGCGGTAAGCGGGCGAACGACTACA
TTGAGGAGCAGCGCTCGAGGCAACACTTGA back to top
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