EWM29217.1, cds1452 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29217.1 vs. NCBI_GenBank
Match: gi|585111737|gb|EWM29217.1| (syntaxin 6 [Nannochloropsis gaditana]) HSP 1 Score: 376.711 bits (966), Expect = 2.273e-132 Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0
Query: 1 MAQDPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRRDVSMSVWAYLQRIAKTGKTLLLSRITSSPVGHSMKARRVTGLEGAVSGRTTTLRSSARGNT 181
MAQDPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRRDVSMSVWAYLQRIAKTGKTLLLSRITSSPVGHSMKARRVTGLEGAVSGRTTTLRSSARGNT
Sbjct: 1 MAQDPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRRDVSMSVWAYLQRIAKTGKTLLLSRITSSPVGHSMKARRVTGLEGAVSGRTTTLRSSARGNT 181
BLAST of EWM29217.1 vs. NCBI_GenBank
Match: gi|298706536|emb|CBJ29506.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus]) HSP 1 Score: 97.8265 bits (242), Expect = 9.834e-22 Identity = 47/119 (39.50%), Postives = 74/119 (62.18%), Query Frame = 0
Query: 2 AQDPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRR 120
+ DPF+A R+E+ +++YI+ + E F LL TNTA + +DLR L +E++ A+ Q R+L + V VE NR F HIDN E+ +R+ F++ KQ L++ + L+ K KM+ D R
Sbjct: 8 SHDPFYAVRDEVSAKIEYIKVRLERFQDLLNNTNTAQNRDFQDLRKGLTKEVKGADAQLRDLRRTVEYVENNRDSFAHIDNAELSERKTFLSDSKQVLLRASDALDGQQTKEKMAQDDR 126
BLAST of EWM29217.1 vs. NCBI_GenBank
Match: gi|1072234019|gb|OEU18749.1| (hypothetical protein FRACYDRAFT_182657 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 74.7146 bits (182), Expect = 9.268e-13 Identity = 42/142 (29.58%), Postives = 78/142 (54.93%), Query Frame = 0
Query: 1 MAQDPFFAAREELRNRVDYIQTQHENFLRLLQTTNTA-PDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRRDVSMSVWAYLQRIAKTGKTLL 141
+ DP+F R +L+N+++ +FLR++ T+TA L RD + L R +++AE+ R+++K V VE +R +F HID+ + +RR+ V + + + + SD +K K+ D R+ + +A++G LL
Sbjct: 58 LGGDPYFVFRSDLQNKLESADEFLADFLRIVHETDTAVSSLEYRDSKKQLKRHLKSAESTLRDVQKTVQAVENDRDKFPHIDDSQFFERRSLVETSRSRIQHAKDEMNSDIIKKKVLSDERN---------RAVARSGDGLL 190
BLAST of EWM29217.1 vs. NCBI_GenBank
Match: gi|813192710|ref|XP_012208237.1| (hypothetical protein SPRG_13851 [Saprolegnia parasitica CBS 223.65] >gi|641526715|gb|KDO21058.1| hypothetical protein SPRG_13851 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 73.559 bits (179), Expect = 1.261e-12 Identity = 37/117 (31.62%), Postives = 64/117 (54.70%), Query Frame = 0
Query: 4 DPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRR 120
DP++ +E+L ++V I +++ + LL N +P L D L +E+ AE LE+ + +E +R ++ HID E+ R++FV+ +Q L+ + L SD KNK+ D R
Sbjct: 17 DPYYVFKEDLESKVSSIHQKYKRWKHLLDARNASPTKDFGKLTDELAKELATAERSLGFLEQSIRAIEADRTKYAHIDRIEVSSRKSFVSDTRQDLMMMTAALTSDAAKNKVRRDER 133
BLAST of EWM29217.1 vs. NCBI_GenBank
Match: gi|397637294|gb|EJK72615.1| (hypothetical protein THAOC_05833 [Thalassiosira oceanica]) HSP 1 Score: 73.559 bits (179), Expect = 3.332e-12 Identity = 39/118 (33.05%), Postives = 70/118 (59.32%), Query Frame = 0
Query: 4 DPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDL-SCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRR 120
DPF+ R +L+ +++ + + N+ +++TT+TA + ++ + L R ++ AE+ +LE V VVEK R++F HI + EI +RR FV K L +++S+ V+NK+ D R
Sbjct: 90 DPFYMFRSDLKEKLNLVDNELSNYHSIIRTTDTAVNTHQLKEAKKLLKRHLKHAESSLNDLETTVRVVEKQREKFPHIRDGEIQERRKFVDNSKDQLAMSKMSMQSEEVRNKLMSDER 207
BLAST of EWM29217.1 vs. NCBI_GenBank
Match: gi|1173948220|gb|OQR96366.1| (Syntaxin-6 [Achlya hypogyna]) HSP 1 Score: 71.2478 bits (173), Expect = 9.571e-12 Identity = 35/117 (29.91%), Postives = 65/117 (55.56%), Query Frame = 0
Query: 4 DPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRR 120
DP++ +E+L ++V + +++ + LL + +P L D L +E+ AE LE+ + +E +R ++ HID E+ R+ FV++ +Q L+ + + L SD KNK+ D R
Sbjct: 17 DPYYVFKEDLESKVSSLHAKYKRWKSLLDARDVSPTKDFPKLTDELTKELTTAERSLGFLEQSIRAIEADRAKYAHIDRVEVSSRKRFVSETRQDLLTMSSALTSDAAKNKVRRDER 133
BLAST of EWM29217.1 vs. NCBI_GenBank
Match: gi|673028626|ref|XP_008868274.1| (hypothetical protein H310_05357 [Aphanomyces invadans] >gi|574475891|gb|ETW02890.1| hypothetical protein H310_05357 [Aphanomyces invadans]) HSP 1 Score: 71.2478 bits (173), Expect = 1.143e-11 Identity = 36/117 (30.77%), Postives = 64/117 (54.70%), Query Frame = 0
Query: 4 DPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRR 120
DP++ +EEL +V I H+ + L+ T ++P D L +E+ +AE LE+ + +E +R ++ HID+ E+ R+ FV+ +Q L++I + SD VK ++ D R
Sbjct: 19 DPYYVFKEELETKVSSIYHTHKRWKLLMNDTTSSPTNRFPKTTDDLKKEVASAERSLGFLEQSIRAIESDRTKYAHIDSVELSGRKTFVSSTRQELMRISVEISSDLVKARIQRDER 135
BLAST of EWM29217.1 vs. NCBI_GenBank
Match: gi|669154094|ref|XP_008612609.1| (hypothetical protein SDRG_08497 [Saprolegnia diclina VS20] >gi|530735572|gb|EQC33814.1| hypothetical protein SDRG_08497 [Saprolegnia diclina VS20]) HSP 1 Score: 68.1662 bits (165), Expect = 1.080e-10 Identity = 34/117 (29.06%), Postives = 64/117 (54.70%), Query Frame = 0
Query: 4 DPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRR 120
DP++ +E+L ++V I +++ + LL + +P L D L +E+ AE LE+ + +E +R ++ HID ++ R++FV+ +Q L+ + L SD K+K+ D R
Sbjct: 17 DPYYVFKEDLESKVSSIHQKYKRWKHLLDARDASPTKDFGKLTDELTKELATAERSLGFLEQSIRAIEADRTKYAHIDRVQVSSRKSFVSDTRQDLMAMTAALTSDAAKSKVRRDER 133
BLAST of EWM29217.1 vs. NCBI_GenBank
Match: gi|566012640|gb|ETI35551.1| (hypothetical protein, variant 7 [Phytophthora parasitica P1569] >gi|566012641|gb|ETI35552.1| hypothetical protein, variant 8 [Phytophthora parasitica P1569] >gi|567950084|gb|ETK75804.1| hypothetical protein, variant 7 [Phytophthora parasitica] >gi|567950085|gb|ETK75805.1| hypothetical protein, variant 8 [Phytophthora parasitica] >gi|568038157|gb|ETM35700.1| hypothetical protein, variant 7 [Phytophthora parasitica] >gi|568038158|gb|ETM35701.1| hypothetical protein, variant 8 [Phytophthora parasitica] >gi|570316346|gb|ETO64294.1| hypothetical protein, variant 7 [Phytophthora parasitica P1976] >gi|570316347|gb|ETO64295.1| hypothetical protein, variant 8 [Phytophthora parasitica P1976]) HSP 1 Score: 66.6254 bits (161), Expect = 2.578e-10 Identity = 33/122 (27.05%), Postives = 61/122 (50.00%), Query Frame = 0
Query: 4 DPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRRDVSMS 125
DPF+ ++EL ++V + +H + +L ++ L + + AE + LE+ + +VE NR +F HID EI R+AFV ++ L + + +D VK ++ + R + S
Sbjct: 14 DPFYVFKDELESKVSAVNQKHAKWRAILDAKDSPAAKELPALTHQIESAVSTAEKSVKFLEETIVMVEANRTKFEHIDAAEIASRKAFVAATRKELQAVSAEISTDAVKTRIRKEERKLMQS 135
BLAST of EWM29217.1 vs. NCBI_GenBank
Match: gi|675207731|ref|XP_008912750.1| (hypothetical protein, variant 7 [Phytophthora parasitica INRA-310] >gi|675207733|ref|XP_008912751.1| hypothetical protein, variant 8 [Phytophthora parasitica INRA-310] >gi|567978757|gb|ETL29243.1| hypothetical protein, variant 7 [Phytophthora parasitica] >gi|567978758|gb|ETL29244.1| hypothetical protein, variant 8 [Phytophthora parasitica] >gi|568087194|gb|ETN02069.1| hypothetical protein, variant 7 [Phytophthora parasitica INRA-310] >gi|568087195|gb|ETN02070.1| hypothetical protein, variant 8 [Phytophthora parasitica INRA-310] >gi|570940117|gb|ETP05374.1| hypothetical protein, variant 7 [Phytophthora parasitica CJ01A1] >gi|570940118|gb|ETP05375.1| hypothetical protein, variant 8 [Phytophthora parasitica CJ01A1] >gi|570970394|gb|ETP33513.1| hypothetical protein, variant 7 [Phytophthora parasitica P10297] >gi|570970395|gb|ETP33514.1| hypothetical protein, variant 8 [Phytophthora parasitica P10297]) HSP 1 Score: 66.2402 bits (160), Expect = 2.829e-10 Identity = 33/122 (27.05%), Postives = 61/122 (50.00%), Query Frame = 0
Query: 4 DPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRRDVSMS 125
DPF+ ++EL ++V + +H + +L ++ L + + AE + LE+ + +VE NR +F HID EI R+AFV ++ L + + +D VK ++ + R + S
Sbjct: 14 DPFYVFKDELESKVSAVNQKHAKWRAILDAKDSPAAKELPALTHQIESAVSTAEKSVKFLEETIVMVEANRTKFEHIDAAEIASRKAFVATTRKELQAVSAEISTDAVKTRIRKEERKLMQS 135 The following BLAST results are available for this feature:
BLAST of EWM29217.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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