EWM29217.1, cds1452 (CDS) Nannochloropsis gaditana

Overview
NameEWM29217.1
Unique Namecds1452
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:676981..677012 +
Alignment locationCM002457.1:677378..677487 +
Alignment locationCM002457.1:677612..677715 +
Alignment locationCM002457.1:677792..678087 +
Alignment locationCM002457.1:678201..678204 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29217.1
Productsyntaxin 6
Orig transcript idgnl|cribi|Naga_100007g127.6544.mrna
GeneSNR15
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:676981..677012 +
CM002457.1supercontigCM002457.1:677378..677487 +
CM002457.1supercontigCM002457.1:677612..677715 +
CM002457.1supercontigCM002457.1:677792..678087 +
CM002457.1supercontigCM002457.1:678201..678204 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0016192vesicle-mediated transport
GO:0048193Golgi vesicle transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR010989t-SNARE
IPR015260Syntaxin-6_N
Homology
BLAST of EWM29217.1 vs. NCBI_GenBank
Match: gi|585111737|gb|EWM29217.1| (syntaxin 6 [Nannochloropsis gaditana])

HSP 1 Score: 376.711 bits (966), Expect = 2.273e-132
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0
Query:    1 MAQDPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRRDVSMSVWAYLQRIAKTGKTLLLSRITSSPVGHSMKARRVTGLEGAVSGRTTTLRSSARGNT 181
            MAQDPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRRDVSMSVWAYLQRIAKTGKTLLLSRITSSPVGHSMKARRVTGLEGAVSGRTTTLRSSARGNT
Sbjct:    1 MAQDPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRRDVSMSVWAYLQRIAKTGKTLLLSRITSSPVGHSMKARRVTGLEGAVSGRTTTLRSSARGNT 181          
BLAST of EWM29217.1 vs. NCBI_GenBank
Match: gi|298706536|emb|CBJ29506.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 97.8265 bits (242), Expect = 9.834e-22
Identity = 47/119 (39.50%), Postives = 74/119 (62.18%), Query Frame = 0
Query:    2 AQDPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRR 120
            + DPF+A R+E+  +++YI+ + E F  LL  TNTA +   +DLR  L +E++ A+ Q R+L + V  VE NR  F HIDN E+ +R+ F++  KQ L++  + L+    K KM+ D R
Sbjct:    8 SHDPFYAVRDEVSAKIEYIKVRLERFQDLLNNTNTAQNRDFQDLRKGLTKEVKGADAQLRDLRRTVEYVENNRDSFAHIDNAELSERKTFLSDSKQVLLRASDALDGQQTKEKMAQDDR 126          
BLAST of EWM29217.1 vs. NCBI_GenBank
Match: gi|1072234019|gb|OEU18749.1| (hypothetical protein FRACYDRAFT_182657 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 74.7146 bits (182), Expect = 9.268e-13
Identity = 42/142 (29.58%), Postives = 78/142 (54.93%), Query Frame = 0
Query:    1 MAQDPFFAAREELRNRVDYIQTQHENFLRLLQTTNTA-PDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRRDVSMSVWAYLQRIAKTGKTLL 141
            +  DP+F  R +L+N+++       +FLR++  T+TA   L  RD +  L R +++AE+  R+++K V  VE +R +F HID+ +  +RR+ V   +  +    + + SD +K K+  D R+         + +A++G  LL
Sbjct:   58 LGGDPYFVFRSDLQNKLESADEFLADFLRIVHETDTAVSSLEYRDSKKQLKRHLKSAESTLRDVQKTVQAVENDRDKFPHIDDSQFFERRSLVETSRSRIQHAKDEMNSDIIKKKVLSDERN---------RAVARSGDGLL 190          
BLAST of EWM29217.1 vs. NCBI_GenBank
Match: gi|813192710|ref|XP_012208237.1| (hypothetical protein SPRG_13851 [Saprolegnia parasitica CBS 223.65] >gi|641526715|gb|KDO21058.1| hypothetical protein SPRG_13851 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 73.559 bits (179), Expect = 1.261e-12
Identity = 37/117 (31.62%), Postives = 64/117 (54.70%), Query Frame = 0
Query:    4 DPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRR 120
            DP++  +E+L ++V  I  +++ +  LL   N +P      L D L +E+  AE     LE+ +  +E +R ++ HID  E+  R++FV+  +Q L+ +   L SD  KNK+  D R
Sbjct:   17 DPYYVFKEDLESKVSSIHQKYKRWKHLLDARNASPTKDFGKLTDELAKELATAERSLGFLEQSIRAIEADRTKYAHIDRIEVSSRKSFVSDTRQDLMMMTAALTSDAAKNKVRRDER 133          
BLAST of EWM29217.1 vs. NCBI_GenBank
Match: gi|397637294|gb|EJK72615.1| (hypothetical protein THAOC_05833 [Thalassiosira oceanica])

HSP 1 Score: 73.559 bits (179), Expect = 3.332e-12
Identity = 39/118 (33.05%), Postives = 70/118 (59.32%), Query Frame = 0
Query:    4 DPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDL-SCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRR 120
            DPF+  R +L+ +++ +  +  N+  +++TT+TA +    ++ +  L R ++ AE+   +LE  V VVEK R++F HI + EI +RR FV   K  L     +++S+ V+NK+  D R
Sbjct:   90 DPFYMFRSDLKEKLNLVDNELSNYHSIIRTTDTAVNTHQLKEAKKLLKRHLKHAESSLNDLETTVRVVEKQREKFPHIRDGEIQERRKFVDNSKDQLAMSKMSMQSEEVRNKLMSDER 207          
BLAST of EWM29217.1 vs. NCBI_GenBank
Match: gi|1173948220|gb|OQR96366.1| (Syntaxin-6 [Achlya hypogyna])

HSP 1 Score: 71.2478 bits (173), Expect = 9.571e-12
Identity = 35/117 (29.91%), Postives = 65/117 (55.56%), Query Frame = 0
Query:    4 DPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRR 120
            DP++  +E+L ++V  +  +++ +  LL   + +P      L D L +E+  AE     LE+ +  +E +R ++ HID  E+  R+ FV++ +Q L+ + + L SD  KNK+  D R
Sbjct:   17 DPYYVFKEDLESKVSSLHAKYKRWKSLLDARDVSPTKDFPKLTDELTKELTTAERSLGFLEQSIRAIEADRAKYAHIDRVEVSSRKRFVSETRQDLLTMSSALTSDAAKNKVRRDER 133          
BLAST of EWM29217.1 vs. NCBI_GenBank
Match: gi|673028626|ref|XP_008868274.1| (hypothetical protein H310_05357 [Aphanomyces invadans] >gi|574475891|gb|ETW02890.1| hypothetical protein H310_05357 [Aphanomyces invadans])

HSP 1 Score: 71.2478 bits (173), Expect = 1.143e-11
Identity = 36/117 (30.77%), Postives = 64/117 (54.70%), Query Frame = 0
Query:    4 DPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRR 120
            DP++  +EEL  +V  I   H+ +  L+  T ++P        D L +E+ +AE     LE+ +  +E +R ++ HID+ E+  R+ FV+  +Q L++I   + SD VK ++  D R
Sbjct:   19 DPYYVFKEELETKVSSIYHTHKRWKLLMNDTTSSPTNRFPKTTDDLKKEVASAERSLGFLEQSIRAIESDRTKYAHIDSVELSGRKTFVSSTRQELMRISVEISSDLVKARIQRDER 135          
BLAST of EWM29217.1 vs. NCBI_GenBank
Match: gi|669154094|ref|XP_008612609.1| (hypothetical protein SDRG_08497 [Saprolegnia diclina VS20] >gi|530735572|gb|EQC33814.1| hypothetical protein SDRG_08497 [Saprolegnia diclina VS20])

HSP 1 Score: 68.1662 bits (165), Expect = 1.080e-10
Identity = 34/117 (29.06%), Postives = 64/117 (54.70%), Query Frame = 0
Query:    4 DPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRR 120
            DP++  +E+L ++V  I  +++ +  LL   + +P      L D L +E+  AE     LE+ +  +E +R ++ HID  ++  R++FV+  +Q L+ +   L SD  K+K+  D R
Sbjct:   17 DPYYVFKEDLESKVSSIHQKYKRWKHLLDARDASPTKDFGKLTDELTKELATAERSLGFLEQSIRAIEADRTKYAHIDRVQVSSRKSFVSDTRQDLMAMTAALTSDAAKSKVRRDER 133          
BLAST of EWM29217.1 vs. NCBI_GenBank
Match: gi|566012640|gb|ETI35551.1| (hypothetical protein, variant 7 [Phytophthora parasitica P1569] >gi|566012641|gb|ETI35552.1| hypothetical protein, variant 8 [Phytophthora parasitica P1569] >gi|567950084|gb|ETK75804.1| hypothetical protein, variant 7 [Phytophthora parasitica] >gi|567950085|gb|ETK75805.1| hypothetical protein, variant 8 [Phytophthora parasitica] >gi|568038157|gb|ETM35700.1| hypothetical protein, variant 7 [Phytophthora parasitica] >gi|568038158|gb|ETM35701.1| hypothetical protein, variant 8 [Phytophthora parasitica] >gi|570316346|gb|ETO64294.1| hypothetical protein, variant 7 [Phytophthora parasitica P1976] >gi|570316347|gb|ETO64295.1| hypothetical protein, variant 8 [Phytophthora parasitica P1976])

HSP 1 Score: 66.6254 bits (161), Expect = 2.578e-10
Identity = 33/122 (27.05%), Postives = 61/122 (50.00%), Query Frame = 0
Query:    4 DPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRRDVSMS 125
            DPF+  ++EL ++V  +  +H  +  +L   ++        L   +   +  AE   + LE+ + +VE NR +F HID  EI  R+AFV   ++ L  +   + +D VK ++  + R +  S
Sbjct:   14 DPFYVFKDELESKVSAVNQKHAKWRAILDAKDSPAAKELPALTHQIESAVSTAEKSVKFLEETIVMVEANRTKFEHIDAAEIASRKAFVAATRKELQAVSAEISTDAVKTRIRKEERKLMQS 135          
BLAST of EWM29217.1 vs. NCBI_GenBank
Match: gi|675207731|ref|XP_008912750.1| (hypothetical protein, variant 7 [Phytophthora parasitica INRA-310] >gi|675207733|ref|XP_008912751.1| hypothetical protein, variant 8 [Phytophthora parasitica INRA-310] >gi|567978757|gb|ETL29243.1| hypothetical protein, variant 7 [Phytophthora parasitica] >gi|567978758|gb|ETL29244.1| hypothetical protein, variant 8 [Phytophthora parasitica] >gi|568087194|gb|ETN02069.1| hypothetical protein, variant 7 [Phytophthora parasitica INRA-310] >gi|568087195|gb|ETN02070.1| hypothetical protein, variant 8 [Phytophthora parasitica INRA-310] >gi|570940117|gb|ETP05374.1| hypothetical protein, variant 7 [Phytophthora parasitica CJ01A1] >gi|570940118|gb|ETP05375.1| hypothetical protein, variant 8 [Phytophthora parasitica CJ01A1] >gi|570970394|gb|ETP33513.1| hypothetical protein, variant 7 [Phytophthora parasitica P10297] >gi|570970395|gb|ETP33514.1| hypothetical protein, variant 8 [Phytophthora parasitica P10297])

HSP 1 Score: 66.2402 bits (160), Expect = 2.829e-10
Identity = 33/122 (27.05%), Postives = 61/122 (50.00%), Query Frame = 0
Query:    4 DPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRRDVSMS 125
            DPF+  ++EL ++V  +  +H  +  +L   ++        L   +   +  AE   + LE+ + +VE NR +F HID  EI  R+AFV   ++ L  +   + +D VK ++  + R +  S
Sbjct:   14 DPFYVFKDELESKVSAVNQKHAKWRAILDAKDSPAAKELPALTHQIESAVSTAEKSVKFLEETIVMVEANRTKFEHIDAAEIASRKAFVATTRKELQAVSAEISTDAVKTRIRKEERKLMQS 135          
The following BLAST results are available for this feature:
BLAST of EWM29217.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111737|gb|EWM29217.1|2.273e-132100.00syntaxin 6 [Nannochloropsis gaditana][more]
gi|298706536|emb|CBJ29506.1|9.834e-2239.50Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
gi|1072234019|gb|OEU18749.1|9.268e-1329.58hypothetical protein FRACYDRAFT_182657 [Fragilario... [more]
gi|813192710|ref|XP_012208237.1|1.261e-1231.62hypothetical protein SPRG_13851 [Saprolegnia paras... [more]
gi|397637294|gb|EJK72615.1|3.332e-1233.05hypothetical protein THAOC_05833 [Thalassiosira oc... [more]
gi|1173948220|gb|OQR96366.1|9.571e-1229.91Syntaxin-6 [Achlya hypogyna][more]
gi|673028626|ref|XP_008868274.1|1.143e-1130.77hypothetical protein H310_05357 [Aphanomyces invad... [more]
gi|669154094|ref|XP_008612609.1|1.080e-1029.06hypothetical protein SDRG_08497 [Saprolegnia dicli... [more]
gi|566012640|gb|ETI35551.1|2.578e-1027.05hypothetical protein, variant 7 [Phytophthora para... [more]
gi|675207731|ref|XP_008912750.1|2.829e-1027.05hypothetical protein, variant 7 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1455rna1455Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications