rna1451, rna1451 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1451
Unique Name	rna1451
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2007
Alignment location	CM002457.1:663381..665027 +

Link to JBrowse

Properties


Property Name	Value
Product	e3 ubiquitin ligase
Orig transcript id	gnl\|cribi\|Naga_100203g4.2707.mrna
Orig protein id	gnl\|cribi\|Naga_100203g4.2707
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:663381..665027 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100203g4	gene1401	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1451	rna1451-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29223.1	cds1448	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:663381..665027+
coding sequence from alignment at CM002457.1:663381..665027+

mRNA sequence

>rna1451 ID=rna1451|Name=rna1451|organism=Nannochloropsis gaditana|type=mRNA|length=2007bp
TCATCATTTTCTGTCTTCATGGTGCACTTATCTCTTGTCTTGGCTCAAAG
AGCGCGTTTCTAGGGAACGTGGGATTTTCAAGGATCTTTCTCGGCTAGTG
AAACGAGAAATCGTTTTGGAAAAGGGCAGCTTCATCTCTTCTGAACTAGA
GTTAGTTGCAGAGGGCGCGCAGGAAGTCTAAAATTTCGAAATCCCTCTTG
TGCCGTCTGTCAATCACCCTACGGAGATGCCTCGCGGGCGCTCTCGCTCT
CGGTCCTTATCCCGCTCTCCAAACGTGGGGGACAGAGACAAGTCGAAGAC
TAGCTTACGCCAGGATGGTCGTCGCAGTGCCGGCCCGCGGTCTCCGACAT
CCAGGGGCCGCAGGTCTCGCTCGCGCTCTCGGTTCAGAGACGCTTTTCCG
CGGTCAAGACGAGGACGCTCTGAACGCAGCCGGAGCCGTGACCGCAGTAA
AGACCGCTTTTTCCGAAAGTCGTCGCATTCCCCTGACTCACGTCCATCCC
GCCGCCGACGTGGTTTTTCTCGCTCCCTCTCACCTTCCCCAGAGCGGCGT
CAACTTGAAAGAGGTAGACTGGAAGATAAGATCATCCCTCAAAATGGCAG
CGGCGGATTACTCAATGCAATTCCCGAGTTGGGAAAGATCTACGAGGGAG
AAGTTGTGAAGGTCGAAAGCTATGGCGCCTTCGTGCGCATCCCTGGCTTT
CAGCGCCAAGGACTGGTGCACATTAGTCAGCTGCAGAAAGGAAGGACAGA
GAAGGTGGACGATGTGATCGACACGGGTCACAAGGTGTTCGTGAAGGTGG
TAGAGGTGACAAACGAGGGTGGTGCCCCGCGAGTAAGCCTCTCGATGCGG
TACGCCCATCAATCCACGGGCCAGGACCTGGACCCCGGGAACGAGGACCT
TAAGAGGGATCAACAGCGGGGGGGGGGCGGAGGCGGCGGGCGTGGGGGTC
TTCAGCCCAGCGGAAAGATCGAAGTTGGGGCCATCGTGAACACCACGTGC
AGTAAGTGCAAGGTCCGCGGCCACATGCCCTTCGAATGCCGAGGCCTGCC
CGACGGCAAGAGCTACGGACTCATAGGGGATGACGAGTTCGCCGCCTTGA
CCCGGCAACCCAACCAGCAGAAACCCTCTCTGCTTCCTTTGACTACCACA
GCGGGGCGGGGCCGAGGGCGAGCCATGCTAACGCCGGCGTGGATGTCGAG
GCAGGGGCTCTCCTTGGAGGGGGCCAAGCGGCCTCAGCCCGACCTCGCCG
CACTCTTCTCGAAATCACGAGCCTCTCCACCTGCAAATGACAGGCCTTCT
CGCTTTCAGGAACCGCGCTTGGAAATGCCCAGAAACGACAAGCGTGGCGG
CGGGCTTCGCGGCTCGAATGCCTTCGAGAGGGGAGAGGGTGGCGGGCAGG
GGGTCGTCGGCATGGCTGGAAGAGGTCGAGGTCGCGGTGCGACGCTGCCG
GCTTGGATGACTTCGGGCGCAGGTCCCTCCGCCCCCGCGGAAGTCGTAGA
CATAGAACGTCGGAGCAGGGAGTCGTCCAGACGGTCTGAAGGGAGGAAGG
ATGAGAGGCGCTCGAGGAAAAAAGAGGATTCTGAAAGCCAGAAAAGGAAG
CGGAGTGATCGAGATGAAAATCGGAAAGAGAAGAAACACCACAAAGATAA
GGATAGAAAGAAGGACAGGAAAAAAGAAAAGGTGAAGCACAAGCACAAGC
ACGAAATGAGAAGCCGTAGTCATAGTCGCAGCCGCACAAGGCACCGGCAT
TCCCGCTCCCGTTCTAGGTCGCCGAAATTTCGTAGTACGAGCGAAGCCTG
CCGCGTATTGGAAGCGTACGAGCGCAAACATCGACACAAGCACTCGTAAT
ATCCTGACATCTTGTGCTGCGTGGCTGCTGCAATAGCGTCGTCGCGTCTC
ATACAAAAGCATTTCTCATATACTAAAGCATTCTTACTTCTTATGCTTCA
AGGCATTAGAGCCCTCAAAGTTTTCCCGAGGGGCACATACTTCTTTTATT
TTCTATC

protein sequence of rna1451

>rna1451-protein ID=rna1451-protein|Name=rna1451|organism=Nannochloropsis gaditana|type=polypeptide|length=347bp
MSSIQGKRCDDCNQTYDTRDRLCPICGAAFPNPVAPASAHAPLLRLQSEQ
ANEPSSSHAFQGEITTHLAERLRILLLQGGWIGESDAFGGDIDLERLLSR
GDGLGGGNGLSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMEC
IPGSFSPIPPDGALIDLVPTVPLTADALPLRHRSTYRDKVLVMQRGKQTF
GAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKA
ASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLIC
ICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS

mRNA from alignment at CM002457.1:663381..665027+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1451 ID=rna1451|Name=rna1451|organism=Nannochloropsis gaditana|type=mRNA|length=1647bp|location=Sequence derived from alignment at CM002457.1:663381..665027+ (Nannochloropsis gaditana)
AGTGCACGGCGACCGAGCCTAGCGATCACGGCCTGATTGTCCTTCTAGTT
CGGAGACGTCTTACAGGGGCAAAGCACAATCGTCGCCATTAGATCCAGCC
AAACTCTGGCACTAGACAAGCGTGGTTGCTCCTCTCGCCTGGAGAGGTCT
GGCAATGGGTATACGTAGTGCTGGACGAGcaaaagggggaagacgacgag
tATCATACATCAACAACCTCCCCTACCTGCCGCCGAGACTCAGACCCCTC
CTTGATCACGGTCAGGCATGTCTTCAATCCAGGGGAAACGTTGCGATGAC
TGCAATCAAACATATGATACGAGAGATAGACTATGTCCGATTTGCGGGGC
TGCATTCCCCAATCCTGTAGCGCCAGCCAGCGCCCACGCCCcactcctcc
gtctccaaTCGGAACAAGCAAATGAGCCTTCATCATCACACGCATTTCAA
GGAGAAATCACAACGCATCTTGCAGAGCGCCTAAGAATTTTGCTCCTGCA
AGGTGGGTGGATTGGGGAATCGGATGCTTTTGGCGGGGACATAGATCTGG
AAAGACTTTTGTcgagaggagatggactcGGCGGAGGGAACGGCTTAAGC
GACGAAGACATTGACAGGCTGCCGCGTTCACAGTTACACAGCACCAGTTC
TATGCTCATATCAGGTAACCAGGGGGGCTTGATGCTTATCTTTACAATTT
ATTTCCGAAATCAAACCACTGATGTAAGATTGTCTCTCTCTTAAATTCAT
CGGCAGTAACCCTCACTTTGGAATCGGATGAGGTTGAGTCAGATATTACG
ATGGAATGCATACCAGGATCGTTTTCGCCCATACCTCCTGATGGTGCGCT
TATAGATTTAGTGCCGACAGTGCCGTTGACGGCGGACGCTTTGCCTTTGC
GGCATCGGTCTACGTACCGCGATAAGGTGCTTGTGATGCAAAGGGGAAAG
CAGACGTTCGGAGCAATGCTTCGGGCAGCAAGGGAGGTTGAGGCGCGAGG
CGTTGTAGTGGTGAACTCCTTACCGCTTTGGCCTTATCTGATGCGGGACG
GGCGGGGCGAGGCGCGTCTGGTAGAGCATCTGTCCGCGCGCGGCGGGGAG
CAGAAAGCGGCCTCCTGCTTCATAGTCATGGTCTCCCAGGGGCACGGACA
GGAGCTTCTCCGGCGACTGGACGCCGGGAGAGCGACAGAGGAGACCCCTG
GTAAGCCCTTGGCGGCTCGACTGGCAGCGTccagggtggaaagggagtgt
CTGATCTGCATCTGCTCCTTcgccgagggggagacgaTCCTACGACTGCC
GTGCCAGCACAGCTACCACGCCGACTGTGCTAGGAAGTGGCTAGCCCTTC
AGAAGACTTGCCCTGCATGTCGCACGCAAATCAAGACGCGGCGTAATAGC
TAAAGCATTCGACATGGATACATTCGAGAATAACCCGAGCGTCGAGCGGG
GGGTTTCTTAGGAAAAGTCTTTCCAACCCACGTTGATGCCCTGATGCCAA
CGTTTTAAAATAATAATTTCAATTTTGTTCTTTTTATTCGTTCCAATCTG
TTTGAAACGGCGCTGCGGCTTTGCGATTCTTTGTAATGCGGTCCTTACAG
GCCTCCTTTTCAAAGCGTGTTGCTCTCGTTTCCCCCTCGGCGTCAGG

Coding sequence (CDS) from alignment at CM002457.1:663381..665027+

>rna1451 ID=rna1451|Name=rna1451|organism=Nannochloropsis gaditana|type=CDS|length=2088bp|location=Sequence derived from alignment at CM002457.1:663381..665027+ (Nannochloropsis gaditana)
ATGTCTTCAATCCAGGGGAAACGTTGCGATGACTGCAATCAAACATATGA
TACGAGAGATAGACTATGTCCGATTTGCGGGGCTGCATTCCCCAATCCTG
TAGCGCCAGCCAGCGCCCACGCCCcactcctccgtctccaaTCGGAACAA
GCAAATGAGCCTTCATCATCACACGCATTTCAAGGAGAAATCACAACGCA
TCTTGCAGAGCGCCTAAGAATTTTGCTCCTGCAAGGTGGGTGGATTGGGG
AATCGGATGCTTTTGGCGGGGACATAGATCTGGAAAGACTTTTGTcgaga
ggagatggactcGGCGGAGGGAACGGCTTAAGCGACGAAGACATTGACAG
GCTGCCGCGTTCACAGTTACACAGCACCAGTTCTATGCTCATATCAGTAA
CCCTCACTTTGGAATCGGATGAGGTTGAGTCAGATATTACGATGGAATGC
ATACCAGGATCGTTTTCGCCCATACCTCCTGATGGTGCGCTTATAGATTT
AGTGCCGACAGTGCCGTTGACGGCGGACGCTTTGCCTTTGCGGCATCGGT
CTACGTACCGCGATAAGGTGCTTGTGATGCAAAGGGGAAAGCAGACGTTC
GGAGCAATGCTTCGGGCAGCAAGGGAGGTTGAGGCGCGAGGCGTTGTAGT
GGTGAACTCCTTACCGCTTTGGCCTTATCTGATGCGGGACGGGCGGGGCG
AGGCGCGTCTGGTAGAGCATCTGTCCGCGCGCGGCGGGGAGCAGAAAGCG
GCCTCCTGCTTCATAGTCATGGTCTCCCAGGGGCACGGACAGGAGCTTCT
CCGGCGACTGGACGCCGGGAGAGCGACAGAGGAGACCCCTGGTAAGCCCT
TGGCGGCTCGACTGGCAGCGTccagggtggaaagggagtgtCTGATCTGC
ATCTGCTCCTTcgccgagggggagacgaTCCTACGACTGCCGTGCCAGCA
CAGCTACCACGCCGACTGTGCTAGGAAGTGGCTAGCCCTTCAGAAGACTT
GCCCTGCATGTCGCACGCAAATCAAGACGCGGCGTAATAGCTAAATGTCT
TCAATCCAGGGGAAACGTTGCGATGACTGCAATCAAACATATGATACGAG
AGATAGACTATGTCCGATTTGCGGGGCTGCATTCCCCAATCCTGTAGCGC
CAGCCAGCGCCCACGCCCcactcctccgtctccaaTCGGAACAAGCAAAT
GAGCCTTCATCATCACACGCATTTCAAGGAGAAATCACAACGCATCTTGC
AGAGCGCCTAAGAATTTTGCTCCTGCAAGGTGGGTGGATTGGGGAATCGG
ATGCTTTTGGCGGGGACATAGATCTGGAAAGACTTTTGTcgagaggagat
ggactcGGCGGAGGGAACGGCTTAAGCGACGAAGACATTGACAGGCTGCC
GCGTTCACAGTTACACAGCACCAGTTCTATGCTCATATCAGTAACCCTCA
CTTTGGAATCGGATGAGGTTGAGTCAGATATTACGATGGAATGCATACCA
GGATCGTTTTCGCCCATACCTCCTGATGGTGCGCTTATAGATTTAGTGCC
GACAGTGCCGTTGACGGCGGACGCTTTGCCTTTGCGGCATCGGTCTACGT
ACCGCGATAAGGTGCTTGTGATGCAAAGGGGAAAGCAGACGTTCGGAGCA
ATGCTTCGGGCAGCAAGGGAGGTTGAGGCGCGAGGCGTTGTAGTGGTGAA
CTCCTTACCGCTTTGGCCTTATCTGATGCGGGACGGGCGGGGCGAGGCGC
GTCTGGTAGAGCATCTGTCCGCGCGCGGCGGGGAGCAGAAAGCGGCCTCC
TGCTTCATAGTCATGGTCTCCCAGGGGCACGGACAGGAGCTTCTCCGGCG
ACTGGACGCCGGGAGAGCGACAGAGGAGACCCCTGGTAAGCCCTTGGCGG
CTCGACTGGCAGCGTccagggtggaaagggagtgtCTGATCTGCATCTGC
TCCTTcgccgagggggagacgaTCCTACGACTGCCGTGCCAGCACAGCTA
CCACGCCGACTGTGCTAGGAAGTGGCTAGCCCTTCAGAAGACTTGCCCTG
CATGTCGCACGCAAATCAAGACGCGGCGTAATAGCTAA

Synonyms

Publications