EWM29223.1, cds1448 (CDS) Nannochloropsis gaditana

Overview
NameEWM29223.1
Unique Namecds1448
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:663648..664044 +
Alignment locationCM002457.1:664137..664783 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29223.1
Producte3 ubiquitin ligase
Orig transcript idgnl|cribi|Naga_100203g4.2707.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:663648..664044 +
CM002457.1supercontigCM002457.1:664137..664783 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Homology
BLAST of EWM29223.1 vs. NCBI_GenBank
Match: gi|585111744|gb|EWM29223.1| (e3 ubiquitin ligase [Nannochloropsis gaditana])

HSP 1 Score: 707.597 bits (1825), Expect = 0.000e+0
Identity = 347/347 (100.00%), Postives = 347/347 (100.00%), Query Frame = 0
Query:    1 MSSIQGKRCDDCNQTYDTRDRLCPICGAAFPNPVAPASAHAPLLRLQSEQANEPSSSHAFQGEITTHLAERLRILLLQGGWIGESDAFGGDIDLERLLSRGDGLGGGNGLSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTADALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS 347
            MSSIQGKRCDDCNQTYDTRDRLCPICGAAFPNPVAPASAHAPLLRLQSEQANEPSSSHAFQGEITTHLAERLRILLLQGGWIGESDAFGGDIDLERLLSRGDGLGGGNGLSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTADALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS
Sbjct:    1 MSSIQGKRCDDCNQTYDTRDRLCPICGAAFPNPVAPASAHAPLLRLQSEQANEPSSSHAFQGEITTHLAERLRILLLQGGWIGESDAFGGDIDLERLLSRGDGLGGGNGLSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTADALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS 347          
BLAST of EWM29223.1 vs. NCBI_GenBank
Match: gi|299469774|emb|CBN76628.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 114.39 bits (285), Expect = 1.277e-25
Identity = 78/232 (33.62%), Postives = 114/232 (49.14%), Query Frame = 0
Query:  112 DEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTADALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKT 343
            ++ +  LPR Q+   S +L    L L      S++++E +   FSP P +  L  +V +VP TAD   L + +     VL+M RG  TF +    A    A   VVV +  +WPY+M D +GEA         GG      C   MVS+  G+ +     A        GK + A L+ S  E++C++C   +A G T++RLPC H YH  C  KWL L  TCP CR ++ +
Sbjct:   69 EQVVKDLPRIQVEENSWVLHQTVLRLTGGGAGSELSIEAVFAPFSPPPSEKVLGPVVLSVPPTADK-DLENEADVEGSVLLMDRGVCTFASKALRANAAGAAAAVVVQTHDVWPYVMEDSKGEAEA-------GGGLNIPVC---MVSKEKGEAI----KAAVVRSAAEGKTIRAELSVSSSEKDCIVCQELYAVGNTLVRLPCGHLYHEACLLKWLKLSNTCPYCRRELPS 285          
BLAST of EWM29223.1 vs. NCBI_GenBank
Match: gi|695393382|ref|XP_009520597.1| (hypothetical protein PHYSODRAFT_555187 [Phytophthora sojae] >gi|348685494|gb|EGZ25309.1| hypothetical protein PHYSODRAFT_555187 [Phytophthora sojae])

HSP 1 Score: 108.997 bits (271), Expect = 1.774e-23
Identity = 75/258 (29.07%), Postives = 118/258 (45.74%), Query Frame = 0
Query:   96 RLLSR--GDGLGGGNGL----SDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTADALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS 347
            RLL++  GD  GG  G     SDE +  L        S++ ++V +     EV +      IPG+F P         LV   P    A P R+ S  +DK++VM RG  TF   +  A++    GVV++ ++ +WPY M D  GE+             K  +    M+S   G   ++ L   R  +      ++A +   +  REC+IC    + G  + R+PCQH +H  C  +WL +  +CP CR +I  +R +
Sbjct:   84 RLLTQIGGDWNGGDTGARRPASDEAVKNLGSFAADQASTIEVAVVVKGIKGEVIA------IPGNFGPCESLKER-KLVVADPFDG-AKPFRNASDMKDKIVVMARGGCTFARKVLRAQDAGVAGVVIIQTVDVWPYTMTDSTGES-------------KGVTIPAFMMSAKVGNGFVKFLRGKRDED------VSADIVVRKDARECVICQVEMSIGMKVTRMPCQHMFHTACLHEWLQIGNSCPICRVEIAAKRTA 314          
BLAST of EWM29223.1 vs. NCBI_GenBank
Match: gi|953501305|emb|CEG37306.1| (zinc finger family protein [Plasmopara halstedii])

HSP 1 Score: 104.76 bits (260), Expect = 6.404e-22
Identity = 90/346 (26.01%), Postives = 140/346 (40.46%), Query Frame = 0
Query:    9 CDDCNQTYDTRD---RLCPICGAAFPNPVAPASAHAPLLRLQSEQANEPSSSHAFQGEITTHLAERLRILLLQGGWIGESDAFGGDIDLERLLSRGDGLGGGNGLSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTAD----ALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS 347
            C DCN+   TR    R C ICG               L R    +ANE    +A  G     + E   +++     IG+ D  GGD D  R              SDE +  L        S++ +++ +     E  +      IPG+F P         L     + AD    A   ++    ++K++VM RG  TF   +  A+   A GV+++ ++ +WPY M D  GE++ V               F++    G G     R      +EE     + A +   +  REC+IC      G  + R+PCQH +H  C  +WL +  +CP CR +I  +RN+
Sbjct:   25 CRDCNEVSQTRTPDGRRCLICGCV-------------LERRYLTEANERVMPNAVFGSRAASVEELQTMVMRLLSQIGD-DWNGGDADARR------------PASDEAVKNLGSFSADQASTIEVAIVVKGIKGEAIA------IPGNFGPCES------LKERKVILADPFDGARAFQNSDDMKNKIVVMARGGCTFAQKVLRAQAAGAAGVIIIQNVDVWPYTMTDSTGESKNV-----------IIPAFMMSAKVGEGFATFIRTQ----SEE----DILANVIVRKNARECVICQGEMVIGVQVTRMPCQHMFHTTCLHEWLQIGNSCPICRVKIAAKRNA 313          
BLAST of EWM29223.1 vs. NCBI_GenBank
Match: gi|570985538|gb|ETP44799.1| (hypothetical protein F442_08676 [Phytophthora parasitica P10297])

HSP 1 Score: 102.449 bits (254), Expect = 4.464e-21
Identity = 70/259 (27.03%), Postives = 119/259 (45.95%), Query Frame = 0
Query:   96 RLLSR--GDGLGGGNG-----LSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTADALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS 347
            RLL+    D  GGG+       SDE +  L        S++ ++V +     EV +      IPG+F P         +V   P    A P ++ +  ++K++VM RG  TF   +  A+   A GV+++ ++ +WPY M D  GE++ V   +              M+S   G+  +  + A R       + ++A +   +  REC+IC    + G  + R+PCQH +H  C  +WL +  +CP CR +I  +R +
Sbjct:   82 RLLTEIGNDWNGGGDTGARRPASDEAVTNLGSFTADQASTIEVAVVVEGIKGEVIA------IPGNFGPCESLKKC-SVVIADPFDG-AKPFQNANEMKNKIVVMTRGGCTFAQKVLRAQAAGAAGVIIIQTVDVWPYTMTDSTGESKDVTIPA-------------FMMSAKVGKGFVEFIRAKR------DESVSADIIVRKDARECVICQVEMSIGMKVTRMPCQHMFHTGCLHEWLQIGNSCPICRVEIAAKRTT 313          
BLAST of EWM29223.1 vs. NCBI_GenBank
Match: gi|1214689209|gb|OWZ04867.1| (hypothetical protein PHMEG_00023156 [Phytophthora megakarya])

HSP 1 Score: 101.679 bits (252), Expect = 7.060e-21
Identity = 87/346 (25.14%), Postives = 145/346 (41.91%), Query Frame = 0
Query:    9 CDDCN---QTYDTRDRLCPICGAAFPNPVAPASAHAPLLRLQSEQANEPSSSHAFQGEITTHLAERLRILLLQGGWIGESDAFGGDIDLERLLSR--GDGLGGGNG----LSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTADALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRR 345
            C DCN   Q   T  + C ICG       + A+ H              +++ A  G   T + E   +                   +ERLL++  GD  GG  G     SDE +  L        S++ ++V +     EV +      +PG+F P        ++V   P    A P ++ +  ++K++VM RG  TF   +  ++   A GV+++ ++ +WPY M D  GE++ V   +              M+S   G   +  L  G   +E     ++A +   +  REC+IC    + G  + R+PCQH +H  C  +WL +  +CP CR +I  +R
Sbjct:   28 CRDCNEVPQATTTDGKRCLICGCELERQQSTAAPH--------------NTTGAMLGNSGTSVQELQAM-------------------VERLLTQIGGDWNGGDTGARRPASDEAVKNLGSFAADQASTIEVAVIVKGIKGEVIA------VPGNFGPCESLKER-NVVVADPFDG-AKPFQNANEMKNKIVVMARGGCTFARKVLRSQAAGAAGVIIIQTVDVWPYTMTDSSGESKDVTIPA-------------FMMSAKVGNGFVDFL--GSKCDE----DVSADIIVRKDARECVICQVEMSIGMKVTRMPCQHMFHTACLHEWLQIGNSCPICRVEIAAKR 313          
BLAST of EWM29223.1 vs. NCBI_GenBank
Match: gi|566024025|gb|ETI46936.1| (hypothetical protein F443_08742 [Phytophthora parasitica P1569] >gi|567961336|gb|ETK86881.1| hypothetical protein L915_08570 [Phytophthora parasitica] >gi|567990057|gb|ETL40294.1| hypothetical protein L916_08500 [Phytophthora parasitica] >gi|568019292|gb|ETL93442.1| hypothetical protein L917_08399 [Phytophthora parasitica] >gi|570951479|gb|ETP16736.1| hypothetical protein F441_08719 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 101.679 bits (252), Expect = 8.290e-21
Identity = 71/263 (27.00%), Postives = 120/263 (45.63%), Query Frame = 0
Query:   96 RLLSR--GDGLGGGNG-----LSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTAD----ALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS 347
            RLL+    D  GGG+       SDE +  L        S++ ++V +     EV +      IPG+F P         L     + AD    A P ++ +  ++K++VM RG  TF   +  A+   A GV+++ ++ +WPY M D  GE++ V   +              M+S   G+  +  + A R       + ++A +   +  REC+IC    + G  + R+PCQH +H  C  +WL +  +CP CR +I  +R +
Sbjct:   82 RLLTEIGNDWNGGGDTGARRPASDEAVRNLGSFTADQASTIEVAVVVEGIKGEVIA------IPGNFGPCE------SLKKCSVVIADPFDGAKPFQNANEMKNKIVVMARGGCTFAQKVLRAQAAGAAGVIIIQTVDVWPYTMTDSTGESKDVTIPA-------------FMMSAKVGKGFVEFIRAKR------DESVSADIIVRKDARECVICQVEMSIGMKVTRMPCQHMFHTGCLHEWLQIGNSCPICRVEIAAKRTT 313          
BLAST of EWM29223.1 vs. NCBI_GenBank
Match: gi|570327720|gb|ETO75668.1| (hypothetical protein F444_08797 [Phytophthora parasitica P1976])

HSP 1 Score: 101.293 bits (251), Expect = 1.053e-20
Identity = 71/263 (27.00%), Postives = 120/263 (45.63%), Query Frame = 0
Query:   96 RLLSR--GDGLGGGNG-----LSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTAD----ALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS 347
            RLL+    D  GGG+       SDE +  L        S++ ++V +     EV +      IPG+F P         L     + AD    A P ++ +  ++K++VM RG  TF   +  A+   A GV+++ ++ +WPY M D  GE++ V   +              M+S   G+  +  + A R       + ++A +   +  REC+IC    + G  + R+PCQH +H  C  +WL +  +CP CR +I  +R +
Sbjct:   82 RLLTEIGNDWNGGGDTGARRPASDEAVRNLGSFTADQASTIEVAVVVEGIKGEVIA------IPGNFGPCE------SLKKCSVVIADPFDGAKPFQNANEMKNKIVVMARGGCTFAQKVLRAQAAGAAGVIIIQTVDVWPYTMTDSTGESKDVTIPA-------------FMMSAKVGKGFVEFIRAKR------DESVSADVIVRKDARECVICQVEMSIGMKVTRMPCQHMFHTGCLHEWLQIGNSCPICRVEIAAKRTT 313          
BLAST of EWM29223.1 vs. NCBI_GenBank
Match: gi|970664670|gb|KUG01539.1| (E3 ubiquitin-protein ligase RING1 [Phytophthora nicotianae])

HSP 1 Score: 101.293 bits (251), Expect = 1.407e-20
Identity = 71/263 (27.00%), Postives = 120/263 (45.63%), Query Frame = 0
Query:   96 RLLSR--GDGLGGGNG-----LSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTAD----ALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS 347
            RLL+    D  GGG+       SDE +  L        S++ ++V +     EV +      IPG+F P         L     + AD    A P ++ +  ++K++VM RG  TF   +  A+   A GV+++ ++ +WPY M D  GE++ V   +              M+S   G+  +  + A R       + ++A +   +  REC+IC    + G  + R+PCQH +H  C  +WL +  +CP CR +I  +R +
Sbjct:  107 RLLTEIGNDWNGGGDTGARRPASDEAVRNLGSFTADQASTIEVAVVVEGIKGEVIA------IPGNFGPCE------SLQKCSVVIADPFDGAKPFQNANEMKNKIVVMARGGCTFAQKVLRAQAAGAAGVIIIQTVDVWPYTMTDSTGESKDVTIPA-------------FMMSAKVGKGFVEFIRAKR------DESVSADIIVRKDARECVICQVEMSIGMKVTRMPCQHMFHTGCLHEWLQIGNSCPICRVEIAAKRTT 338          
BLAST of EWM29223.1 vs. NCBI_GenBank
Match: gi|675193401|ref|XP_008905585.1| (hypothetical protein PPTG_11087 [Phytophthora parasitica INRA-310] >gi|568094242|gb|ETN09024.1| hypothetical protein PPTG_11087 [Phytophthora parasitica INRA-310])

HSP 1 Score: 101.293 bits (251), Expect = 1.421e-20
Identity = 71/263 (27.00%), Postives = 120/263 (45.63%), Query Frame = 0
Query:   96 RLLSR--GDGLGGGNG-----LSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTAD----ALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS 347
            RLL+    D  GGG+       SDE +  L        S++ ++V +     EV +      IPG+F P         L     + AD    A P ++ +  ++K++VM RG  TF   +  A+   A GV+++ ++ +WPY M D  GE++ V   +              M+S   G+  +  + A R       + ++A +   +  REC+IC    + G  + R+PCQH +H  C  +WL +  +CP CR +I  +R +
Sbjct:  107 RLLTEIGNDWNGGGDTGARRPASDEAVRNLGSFTADQASTIEVAVVVEGIKGEVIA------IPGNFGPCE------SLQKCSVVIADPFDGAKPFQNANEMKNKIVVMTRGGCTFAQKVLRAQAAGAAGVIIIQTVDVWPYTMTDSTGESKDVTIPA-------------FMMSAKVGKGFVEFIRAKR------DESVSADIIVRKDARECVICQVEMSIGMKVTRMPCQHMFHTGCLHEWLQIGNSCPICRVEIAAKRTT 338          
The following BLAST results are available for this feature:
BLAST of EWM29223.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111744|gb|EWM29223.1|0.000e+0100.00e3 ubiquitin ligase [Nannochloropsis gaditana][more]
gi|299469774|emb|CBN76628.1|1.277e-2533.62conserved unknown protein [Ectocarpus siliculosus][more]
gi|695393382|ref|XP_009520597.1|1.774e-2329.07hypothetical protein PHYSODRAFT_555187 [Phytophtho... [more]
gi|953501305|emb|CEG37306.1|6.404e-2226.01zinc finger family protein [Plasmopara halstedii][more]
gi|570985538|gb|ETP44799.1|4.464e-2127.03hypothetical protein F442_08676 [Phytophthora para... [more]
gi|1214689209|gb|OWZ04867.1|7.060e-2125.14hypothetical protein PHMEG_00023156 [Phytophthora ... [more]
gi|566024025|gb|ETI46936.1|8.290e-2127.00hypothetical protein F443_08742 [Phytophthora para... [more]
gi|570327720|gb|ETO75668.1|1.053e-2027.00hypothetical protein F444_08797 [Phytophthora para... [more]
gi|970664670|gb|KUG01539.1|1.407e-2027.00E3 ubiquitin-protein ligase RING1 [Phytophthora ni... [more]
gi|675193401|ref|XP_008905585.1|1.421e-2027.00hypothetical protein PPTG_11087 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1451rna1451Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications