EWM29223.1, cds1448 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29223.1 vs. NCBI_GenBank
Match: gi|585111744|gb|EWM29223.1| (e3 ubiquitin ligase [Nannochloropsis gaditana]) HSP 1 Score: 707.597 bits (1825), Expect = 0.000e+0 Identity = 347/347 (100.00%), Postives = 347/347 (100.00%), Query Frame = 0 Query: 1 MSSIQGKRCDDCNQTYDTRDRLCPICGAAFPNPVAPASAHAPLLRLQSEQANEPSSSHAFQGEITTHLAERLRILLLQGGWIGESDAFGGDIDLERLLSRGDGLGGGNGLSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTADALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS 347 MSSIQGKRCDDCNQTYDTRDRLCPICGAAFPNPVAPASAHAPLLRLQSEQANEPSSSHAFQGEITTHLAERLRILLLQGGWIGESDAFGGDIDLERLLSRGDGLGGGNGLSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTADALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS Sbjct: 1 MSSIQGKRCDDCNQTYDTRDRLCPICGAAFPNPVAPASAHAPLLRLQSEQANEPSSSHAFQGEITTHLAERLRILLLQGGWIGESDAFGGDIDLERLLSRGDGLGGGNGLSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTADALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS 347
BLAST of EWM29223.1 vs. NCBI_GenBank
Match: gi|299469774|emb|CBN76628.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 114.39 bits (285), Expect = 1.277e-25 Identity = 78/232 (33.62%), Postives = 114/232 (49.14%), Query Frame = 0 Query: 112 DEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTADALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKT 343 ++ + LPR Q+ S +L L L S++++E + FSP P + L +V +VP TAD L + + VL+M RG TF + A A VVV + +WPY+M D +GEA GG C MVS+ G+ + A GK + A L+ S E++C++C +A G T++RLPC H YH C KWL L TCP CR ++ + Sbjct: 69 EQVVKDLPRIQVEENSWVLHQTVLRLTGGGAGSELSIEAVFAPFSPPPSEKVLGPVVLSVPPTADK-DLENEADVEGSVLLMDRGVCTFASKALRANAAGAAAAVVVQTHDVWPYVMEDSKGEAEA-------GGGLNIPVC---MVSKEKGEAI----KAAVVRSAAEGKTIRAELSVSSSEKDCIVCQELYAVGNTLVRLPCGHLYHEACLLKWLKLSNTCPYCRRELPS 285
BLAST of EWM29223.1 vs. NCBI_GenBank
Match: gi|695393382|ref|XP_009520597.1| (hypothetical protein PHYSODRAFT_555187 [Phytophthora sojae] >gi|348685494|gb|EGZ25309.1| hypothetical protein PHYSODRAFT_555187 [Phytophthora sojae]) HSP 1 Score: 108.997 bits (271), Expect = 1.774e-23 Identity = 75/258 (29.07%), Postives = 118/258 (45.74%), Query Frame = 0 Query: 96 RLLSR--GDGLGGGNGL----SDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTADALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS 347 RLL++ GD GG G SDE + L S++ ++V + EV + IPG+F P LV P A P R+ S +DK++VM RG TF + A++ GVV++ ++ +WPY M D GE+ K + M+S G ++ L R + ++A + + REC+IC + G + R+PCQH +H C +WL + +CP CR +I +R + Sbjct: 84 RLLTQIGGDWNGGDTGARRPASDEAVKNLGSFAADQASTIEVAVVVKGIKGEVIA------IPGNFGPCESLKER-KLVVADPFDG-AKPFRNASDMKDKIVVMARGGCTFARKVLRAQDAGVAGVVIIQTVDVWPYTMTDSTGES-------------KGVTIPAFMMSAKVGNGFVKFLRGKRDED------VSADIVVRKDARECVICQVEMSIGMKVTRMPCQHMFHTACLHEWLQIGNSCPICRVEIAAKRTA 314
BLAST of EWM29223.1 vs. NCBI_GenBank
Match: gi|953501305|emb|CEG37306.1| (zinc finger family protein [Plasmopara halstedii]) HSP 1 Score: 104.76 bits (260), Expect = 6.404e-22 Identity = 90/346 (26.01%), Postives = 140/346 (40.46%), Query Frame = 0 Query: 9 CDDCNQTYDTRD---RLCPICGAAFPNPVAPASAHAPLLRLQSEQANEPSSSHAFQGEITTHLAERLRILLLQGGWIGESDAFGGDIDLERLLSRGDGLGGGNGLSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTAD----ALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS 347 C DCN+ TR R C ICG L R +ANE +A G + E +++ IG+ D GGD D R SDE + L S++ +++ + E + IPG+F P L + AD A ++ ++K++VM RG TF + A+ A GV+++ ++ +WPY M D GE++ V F++ G G R +EE + A + + REC+IC G + R+PCQH +H C +WL + +CP CR +I +RN+ Sbjct: 25 CRDCNEVSQTRTPDGRRCLICGCV-------------LERRYLTEANERVMPNAVFGSRAASVEELQTMVMRLLSQIGD-DWNGGDADARR------------PASDEAVKNLGSFSADQASTIEVAIVVKGIKGEAIA------IPGNFGPCES------LKERKVILADPFDGARAFQNSDDMKNKIVVMARGGCTFAQKVLRAQAAGAAGVIIIQNVDVWPYTMTDSTGESKNV-----------IIPAFMMSAKVGEGFATFIRTQ----SEE----DILANVIVRKNARECVICQGEMVIGVQVTRMPCQHMFHTTCLHEWLQIGNSCPICRVKIAAKRNA 313
BLAST of EWM29223.1 vs. NCBI_GenBank
Match: gi|570985538|gb|ETP44799.1| (hypothetical protein F442_08676 [Phytophthora parasitica P10297]) HSP 1 Score: 102.449 bits (254), Expect = 4.464e-21 Identity = 70/259 (27.03%), Postives = 119/259 (45.95%), Query Frame = 0 Query: 96 RLLSR--GDGLGGGNG-----LSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTADALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS 347 RLL+ D GGG+ SDE + L S++ ++V + EV + IPG+F P +V P A P ++ + ++K++VM RG TF + A+ A GV+++ ++ +WPY M D GE++ V + M+S G+ + + A R + ++A + + REC+IC + G + R+PCQH +H C +WL + +CP CR +I +R + Sbjct: 82 RLLTEIGNDWNGGGDTGARRPASDEAVTNLGSFTADQASTIEVAVVVEGIKGEVIA------IPGNFGPCESLKKC-SVVIADPFDG-AKPFQNANEMKNKIVVMTRGGCTFAQKVLRAQAAGAAGVIIIQTVDVWPYTMTDSTGESKDVTIPA-------------FMMSAKVGKGFVEFIRAKR------DESVSADIIVRKDARECVICQVEMSIGMKVTRMPCQHMFHTGCLHEWLQIGNSCPICRVEIAAKRTT 313
BLAST of EWM29223.1 vs. NCBI_GenBank
Match: gi|1214689209|gb|OWZ04867.1| (hypothetical protein PHMEG_00023156 [Phytophthora megakarya]) HSP 1 Score: 101.679 bits (252), Expect = 7.060e-21 Identity = 87/346 (25.14%), Postives = 145/346 (41.91%), Query Frame = 0 Query: 9 CDDCN---QTYDTRDRLCPICGAAFPNPVAPASAHAPLLRLQSEQANEPSSSHAFQGEITTHLAERLRILLLQGGWIGESDAFGGDIDLERLLSR--GDGLGGGNG----LSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTADALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRR 345 C DCN Q T + C ICG + A+ H +++ A G T + E + +ERLL++ GD GG G SDE + L S++ ++V + EV + +PG+F P ++V P A P ++ + ++K++VM RG TF + ++ A GV+++ ++ +WPY M D GE++ V + M+S G + L G +E ++A + + REC+IC + G + R+PCQH +H C +WL + +CP CR +I +R Sbjct: 28 CRDCNEVPQATTTDGKRCLICGCELERQQSTAAPH--------------NTTGAMLGNSGTSVQELQAM-------------------VERLLTQIGGDWNGGDTGARRPASDEAVKNLGSFAADQASTIEVAVIVKGIKGEVIA------VPGNFGPCESLKER-NVVVADPFDG-AKPFQNANEMKNKIVVMARGGCTFARKVLRSQAAGAAGVIIIQTVDVWPYTMTDSSGESKDVTIPA-------------FMMSAKVGNGFVDFL--GSKCDE----DVSADIIVRKDARECVICQVEMSIGMKVTRMPCQHMFHTACLHEWLQIGNSCPICRVEIAAKR 313
BLAST of EWM29223.1 vs. NCBI_GenBank
Match: gi|566024025|gb|ETI46936.1| (hypothetical protein F443_08742 [Phytophthora parasitica P1569] >gi|567961336|gb|ETK86881.1| hypothetical protein L915_08570 [Phytophthora parasitica] >gi|567990057|gb|ETL40294.1| hypothetical protein L916_08500 [Phytophthora parasitica] >gi|568019292|gb|ETL93442.1| hypothetical protein L917_08399 [Phytophthora parasitica] >gi|570951479|gb|ETP16736.1| hypothetical protein F441_08719 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 101.679 bits (252), Expect = 8.290e-21 Identity = 71/263 (27.00%), Postives = 120/263 (45.63%), Query Frame = 0 Query: 96 RLLSR--GDGLGGGNG-----LSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTAD----ALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS 347 RLL+ D GGG+ SDE + L S++ ++V + EV + IPG+F P L + AD A P ++ + ++K++VM RG TF + A+ A GV+++ ++ +WPY M D GE++ V + M+S G+ + + A R + ++A + + REC+IC + G + R+PCQH +H C +WL + +CP CR +I +R + Sbjct: 82 RLLTEIGNDWNGGGDTGARRPASDEAVRNLGSFTADQASTIEVAVVVEGIKGEVIA------IPGNFGPCE------SLKKCSVVIADPFDGAKPFQNANEMKNKIVVMARGGCTFAQKVLRAQAAGAAGVIIIQTVDVWPYTMTDSTGESKDVTIPA-------------FMMSAKVGKGFVEFIRAKR------DESVSADIIVRKDARECVICQVEMSIGMKVTRMPCQHMFHTGCLHEWLQIGNSCPICRVEIAAKRTT 313
BLAST of EWM29223.1 vs. NCBI_GenBank
Match: gi|570327720|gb|ETO75668.1| (hypothetical protein F444_08797 [Phytophthora parasitica P1976]) HSP 1 Score: 101.293 bits (251), Expect = 1.053e-20 Identity = 71/263 (27.00%), Postives = 120/263 (45.63%), Query Frame = 0 Query: 96 RLLSR--GDGLGGGNG-----LSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTAD----ALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS 347 RLL+ D GGG+ SDE + L S++ ++V + EV + IPG+F P L + AD A P ++ + ++K++VM RG TF + A+ A GV+++ ++ +WPY M D GE++ V + M+S G+ + + A R + ++A + + REC+IC + G + R+PCQH +H C +WL + +CP CR +I +R + Sbjct: 82 RLLTEIGNDWNGGGDTGARRPASDEAVRNLGSFTADQASTIEVAVVVEGIKGEVIA------IPGNFGPCE------SLKKCSVVIADPFDGAKPFQNANEMKNKIVVMARGGCTFAQKVLRAQAAGAAGVIIIQTVDVWPYTMTDSTGESKDVTIPA-------------FMMSAKVGKGFVEFIRAKR------DESVSADVIVRKDARECVICQVEMSIGMKVTRMPCQHMFHTGCLHEWLQIGNSCPICRVEIAAKRTT 313
BLAST of EWM29223.1 vs. NCBI_GenBank
Match: gi|970664670|gb|KUG01539.1| (E3 ubiquitin-protein ligase RING1 [Phytophthora nicotianae]) HSP 1 Score: 101.293 bits (251), Expect = 1.407e-20 Identity = 71/263 (27.00%), Postives = 120/263 (45.63%), Query Frame = 0 Query: 96 RLLSR--GDGLGGGNG-----LSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTAD----ALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS 347 RLL+ D GGG+ SDE + L S++ ++V + EV + IPG+F P L + AD A P ++ + ++K++VM RG TF + A+ A GV+++ ++ +WPY M D GE++ V + M+S G+ + + A R + ++A + + REC+IC + G + R+PCQH +H C +WL + +CP CR +I +R + Sbjct: 107 RLLTEIGNDWNGGGDTGARRPASDEAVRNLGSFTADQASTIEVAVVVEGIKGEVIA------IPGNFGPCE------SLQKCSVVIADPFDGAKPFQNANEMKNKIVVMARGGCTFAQKVLRAQAAGAAGVIIIQTVDVWPYTMTDSTGESKDVTIPA-------------FMMSAKVGKGFVEFIRAKR------DESVSADIIVRKDARECVICQVEMSIGMKVTRMPCQHMFHTGCLHEWLQIGNSCPICRVEIAAKRTT 338
BLAST of EWM29223.1 vs. NCBI_GenBank
Match: gi|675193401|ref|XP_008905585.1| (hypothetical protein PPTG_11087 [Phytophthora parasitica INRA-310] >gi|568094242|gb|ETN09024.1| hypothetical protein PPTG_11087 [Phytophthora parasitica INRA-310]) HSP 1 Score: 101.293 bits (251), Expect = 1.421e-20 Identity = 71/263 (27.00%), Postives = 120/263 (45.63%), Query Frame = 0 Query: 96 RLLSR--GDGLGGGNG-----LSDEDIDRLPRSQLHSTSSMLISVTLTLESDEVESDITMECIPGSFSPIPPDGALIDLVPTVPLTAD----ALPLRHRSTYRDKVLVMQRGKQTFGAMLRAAREVEARGVVVVNSLPLWPYLMRDGRGEARLVEHLSARGGEQKAASCFIVMVSQGHGQELLRRLDAGRATEETPGKPLAARLAASRVERECLICICSFAEGETILRLPCQHSYHADCARKWLALQKTCPACRTQIKTRRNS 347 RLL+ D GGG+ SDE + L S++ ++V + EV + IPG+F P L + AD A P ++ + ++K++VM RG TF + A+ A GV+++ ++ +WPY M D GE++ V + M+S G+ + + A R + ++A + + REC+IC + G + R+PCQH +H C +WL + +CP CR +I +R + Sbjct: 107 RLLTEIGNDWNGGGDTGARRPASDEAVRNLGSFTADQASTIEVAVVVEGIKGEVIA------IPGNFGPCE------SLQKCSVVIADPFDGAKPFQNANEMKNKIVVMTRGGCTFAQKVLRAQAAGAAGVIIIQTVDVWPYTMTDSTGESKDVTIPA-------------FMMSAKVGKGFVEFIRAKR------DESVSADIIVRKDARECVICQVEMSIGMKVTRMPCQHMFHTGCLHEWLQIGNSCPICRVEIAAKRTT 338 The following BLAST results are available for this feature:
BLAST of EWM29223.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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