rna1448, rna1448 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1448
Unique Name	rna1448
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2816
Alignment location	CM002457.1:655053..658218 +

Link to JBrowse

Properties


Property Name	Value
Product	methyltransferase family protein
Orig transcript id	gnl\|cribi\|Naga_100203g7.2713.mrna
Orig protein id	gnl\|cribi\|Naga_100203g7.2713
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:655053..658218 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100203g7	gene1398	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1448	rna1448-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29229.1	cds1445	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002457.1:655053..658218+
coding sequence from alignment at CM002457.1:655053..658218+

mRNA sequence

>rna1448 ID=rna1448|Name=rna1448|organism=Nannochloropsis gaditana|type=mRNA|length=2816bp
GACACGACTGTCCGACGCAACAGACACTGACTGACTTTAACTTCCTTACT
TACTGGCTTTAACCTCCCGGCCGCAGGGACCACCACGTACTTCTCCGCAG
GGCGCGGAGCGTGATAAAAGACAGAGATTGATAAGTCACACGAAATGTAC
AGAACACATAGATGTAAACTTGGCTGAAAAGGTGATGACGACACCAAAGC
TTTGGCGTTTTATCGCAGCTTTGGACCTTATTTTTTGCACGACTCCTGCC
ATGTCTTTTCTTCATGTACCGCTTCAACTGAAAATTTCTGAGCCCGTCTA
CGAGAACCAGGGCAGAAGACGGGATCAGGACAAAAATTCGGGGGGGGTTA
ACCAAGTCTACGTCAAGCATCAGGCCCCGGCTTCCAGTTATAATCAAATT
CACAGGAATTCCTTCCTATACTTGACAAAGTCTCCACTCCTCCGAGCGCA
CGGAGCCGGTCATGTTCCAACCACTGAATCTCTTCACGCCCTGGACTTGT
CGGCGGCAGCCAAAGGCCAGACGGTTGAAGAAGTATTACTCCTGGCACAA
CTGCCGAGGGACATTGTTGCCAAAGCGTTGACATCTTTTCCAGGACTTCG
CGATTGTCATCCGCATGCTGAAGTCCTCGGCCGACTGCACCACCTTAATT
TCATCATCCAACAAGGAGTGTATTCCTTCTCTGAGGCCTTGCATTTGATT
GCCAATCAACCGCAGTTTCTGGAAATGCCTTTTTCGATAGTTTATGAAGA
CGATGATTTGGTTGTCATCAATAAACCCAGTGACGTGCGAATGGATGTGC
CCCAGCGGAAAGGCGTCCAAGGGCAACGGAAGTGGCCCATGGAGTTTACA
TGCTCAGATTGGCTCGATACTCCGGGGCTGATTGAGCCCCCGCTGGAAAA
AAAACGATTCTGCCACAATTTAGATTCGGCCACCTCTGGCATCCTTTGTG
TTGCTCGAAACCAGGCTGCGGCCGCGCGAGTAGTGGAGCTGTTTTCGAAG
CGGATGGTGGAAAAAGAATACCTTGCGGTCGTGTTCGGCCATGTGTCCTC
GACCGCCGACAGCGACACGCTTTTTATCGATGCTCCAATCGAAAAAGATC
CGCATAGTGATTTCAGGATGCGAATCGGACCAGAGGGAAAATCTGCGCAG
ACACAAGTAGAGGTCTTGGAGAGAGGATTTCTGAGGTTGCAAGGGCCGCA
TTTCAACGCTCCCGTCTCAAAACTCAGACTAAAGCCTATCACTGGTCGGC
GTCATCAATTGAGGGTTCACACCATGTCCTTAGGCTACGGTATAGTGGGG
GACACCTACGTAGGGGACTGGGCGAGCTACCGGATGATGCTGCACGCGCA
CAAGCTCGGCCTCCCCATGGCCCCCGACAAGCATCTACAGCTGGTCACGG
TGGACCCTTTCCAAGCGCTGATTTCTCCACAGCCGCTGACTGGGTGACAA
AATAAGGGAGACAACGAGTCTCCACCTCACCACGTGTCTCAGAGCAGACA
AGCTGGTGTGTTACGATTGAGGTATGCAGCTGTTAAACAACAAGGTGTGA
CAAAGAAACAACACGTCAACTTTTTCATGCCACGAAACTCCAATTGTATA
ACGAGGAAGAATGCGGCCTTCTTGCACGAAGGCAGAGATATTCTTCTTTC
CAGAAGACTCTCAGTGAAGCGTCCCTATGGACTCTCTCCCATCTTTCCCT
CTCCCGAGCACCCGCCACGGCATGCGTTCGCCATCTTCTCAGCATCACCT
TCAGAGGACGGCGACGACTCGAGGGCGTTCTGCTACAACGTTGTCATCCC
TTAGAACATGGATAGATGCGACGAGTCGCCCTTGTCCCCGCGAGGTGCGT
TCAAGAGCGTAAAATTCTTCTCGAGGATGTCGAAGCACGTCAGGTAGGCC
GAGTGGCACAGCTCGACATCTCGCTTGAAGATAGTGAAGAATTTAGCATC
CAGCGCCACCAAATGCTCAAGCTGGTCAGGAAGGAACTCGCTCTTCTTGA
CGGACTTCTCCTCTGTCTGGGACTCGCTACCCTTCGTCTCGTCTCCGTCC
TTGCCGCCCGTGGTGCTGCTCTTGCTCTTGCTTTCTTTGACGTCCGTCGA
TGTGCGCGCCACCAACTTTTCCACAGCGCTCGCTCGCTCTGAGAAGTAGT
TCGGGAGCTCGTCCAGCCCCTTGTTCAAGACCTCTATCTTGCCCTCAATC
GTCTTCACCACCTCCAGTATCACAGCCACCCCGAAATTGCCCCCGTCACT
GACTTTGGGCACTTTAAGCTTAAGCCACGTGCACACTAGATGCAAGTCTT
CCACAGTGCGGAGGAGCACATCACGCGCTGTGCCCAAAGACCCGGACACC
TCGGCGTTGGCGGCCACCGCAGCCCGAGAGTGCGTCATAACCTCAGAAAC
GCTCTTCCCGAAGGGCGCTGCCTGGAGCACGGCCTCCACCTCGGCGATGC
GTGCAGGCATCACGCTGCGCAACTCCATGATTTTTTTCTACAGCCACGAA
CAGAAGACGTGAGTATTGGTTAGGATGGAGATGGAGTGGTGGCACTTCAT
CAGAAAGAAAGTCTTCGAGAGGCCCCAGGACAAAAAGAACACGCGACACA
ATGTCGAGGTCAATGAGGGGCGAATACATTAAATTTCATTATGTTGAACG
AACAATTAACTAAATGGCGTGCTGGCTGATAATGGTACGCAAAGGGCTAC
CAAAAACTCGCACACAACGTTGGCACGTAGTCGAGGAAAAGAAGGGGAGA
CTGCCCCCCCCTTTCCTGTGGACATACCTGATACGTTTCGAGAAATTCCT
TGGTTGCCATAGTATG

protein sequence of rna1448

>rna1448-protein ID=rna1448-protein|Name=rna1448|organism=Nannochloropsis gaditana|type=polypeptide|length=285bp
MSGNKCAVAGAYHDHDFDFDAYRRSTEPTLATVSCLPREDIFRAESPPVQ
AWESFFHRHSDKATFFKKRRYLVLEFPELLDKAGEYAATNNFKCRLLEIG
CGYGSSLAAIMEANPDLICFACDLSTTALHLLDRALGDIYKQRLTAFICD
VVKNDIPCHLVLPGSMDFVLMTFMLSAIGKKEEHQAVFHRAYAALRPGGL
LLFRDYGWCDAKMVRSRNRIGQQLYKRADGTLAYFFTAEDINQLASTAGF
HVQECKYATVLSKNRATREELKRVFVHAKLQRGDG

mRNA from alignment at CM002457.1:655053..658218+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1448 ID=rna1448|Name=rna1448|organism=Nannochloropsis gaditana|type=mRNA|length=3166bp|location=Sequence derived from alignment at CM002457.1:655053..658218+ (Nannochloropsis gaditana)
TCGGACAGTCGTGTCGTTTTCCCCTAGAATTGGAGCAAGCGAACCAGGAT
CTGGGTTTTGGTCGCGATAGATTACTATTTTGGACGGTATCATTGTAAAA
TATGTACCACTATGCTACCCTTTCACTTCGCAAGAGCTCAACTTGATACT
TCCGCATAGAATCATCGAATGCATAGTCTCATGTCCCTCTAATGCCCCTT
CACTGTCTAGTTTTATGTCTGGCAATAAGTGTGCGGTCGCAGGAGCATAT
CATGACCATGATTTCGATTTCGATGCATATCGAAGGTCGACCGAACCAAC
CCTGGCCACGGTCTCTTGCCTTCCTCGGGAAGACATCTTCCGAGCTGAGT
CTCCACCAGTACAAGCATGGGAATCTTTTTTCCATCGACACTCCGATAAA
GCTacttttttcaaaaaaagaCGATACTTGGTATTGGAATTTCCGGAACT
CCTGGACAAGGCTGGGGAATACGCAGCCACAAATAATTTCAAGTGCCGAT
TGCTCGAGATTGGATGTGGGTACGGCTCAAGCCTTGCAGCCATTATGGAG
GCAAACCCCGACTTGATATGTTTTGCCTGCGATCTTAGCACCACAGCCTT
GCATCTATTAGATAGAGCGCTCGGAGACATTTACAAGCAGCGCTTGACAG
CTTTCATCTGCGACGTGGTAAAAAATGATATACCTTGTCATCTAGTTCTT
CCAGGAAGCATGGACTTTGTCCTGATGACTTTCATGCTTTCGGCAATtgg
caagaaagaggagcatCAAGCCGTCTTCCACCGTGCTTATGCAGCCTTAC
GCCCTGGAGGATTGCTCTTATTTCGAGACTATGGTTGGTGTGATGCGAAA
ATGGTACGAAGCAGGAATAGGATCGGGCAACAGTTGTACAAACGTGCAGA
CGGCACGCTCGCGTACTTTTTCACGGCGGAAGATATCAATCAGCTGGCAA
GTACAGCTGGCTTTCATGTACAAGAATGCAAGTATGCCACTGTTCTATCC
AAGAACAGAGCGACGAGAGAGGAACTCAAGCGCGTGTTTGTACACGCCAA
GCTACAGCGTGGCGATGGTTGAGACATTGTGATGAGTTTTTGGTTATACA
ATGCGGCGTAATAACCTGCACAAGTACCTCAGCAGGTAAATGATAGATGT
GAATAAAAATGGATTGGCGTAGCCCACCTTCACCGAAGACAGAGTCAGGT
GGAGCTGTGATTGTAGATCGTTTTTGTGTGCTTTCCTATTCTATAAATAA
AATCGCGTGTTCAAACCAAGCTACGTCTTTCTCATAAGAGGCAAAGCTAA
AAGTATAATTTTTCTCGTCGCAGCATAGAATATGCTCGCATGCGGATGAT
GTGTTCGAAAACGAAGACATTTTCAGGAGTCACATTAACAGTGATGACAC
CAACACATCTCAAAACTTCATTCTACAATGGTAGTATCCCTATTTTTTTC
ACTATTCTGAGGCAAACAGAAGAGAACGAACCCCACCCACGTCGAGAATC
TTCTGAACCGTCTTCAACTGGTCACGATCAAGCTTGCCGCTTTCTAGGCA
CCGGACAAGCCTCTGCACTTCACGCTCTTCATCGAGGTAACGCAAGCAGA
GCTCAGCCAAGCGTTCGCGGGGCTGAGACTCGAAGAATTTGGTTCCCTCC
CGGTAGACAATGCGGCTGGCCAAGCAGCAAGCGAAGGCATTCGTGATGTA
TTGCGCAGGTACCTTTTCTCGAACTTGATCGAAGCCGAGCGCAACCACTG
TGGGAGGCAAATGCTCTTTAAAAAGAGGCAAAAGGTCCTGATATTGCTCT
TCGCTCATACTTTCAAGGCCTACTGTGAGTGTGTCGCGGGCCAAGTTGAT
TGCATTAGAAATGCGCTCACTAAAGTAAGGAAGCTGCCCGGGATAGGTTG
CGAACTCTCGGAAAAGCAGCTCGGCTTCGACACGAGCGTAATAACGGAGC
TTCTCCAGGACCTGGGCGACAATTTCTTCTTTATGCTCCTTGAACTGAGC
ATCGGTGAGaagcatggaggaagcgatcTCAAACGAGGAGCAGATGACCC
CGCACTTGTTGGCCGATGAGTCCTTTATGATGAGCACTCCCGCCTCTTCG
AAGAGCTTCTTGCGAGCCTCGGGCGTGATGAAAATGTTAGCTCCTTCCAC
GATGAGGCGAGAGCTTGGCACCTTGTAATCAGGGCCTTGCAGGAATGCGC
GGTAGTTAGTGCCATCAATGGTGCcgggccgccctcccgcgGGTATGAAG
GCGTCCGCCACCACCCGACTGTGCATAGTGTTACGGAGACGAATGCCCTC
CTCGGTATCTACGGTATGAAAGTCGCCCCTGTCTGACAGCCTGGTGGGAT
CAAACGCCGACAAAGGGAGCGAGCCCTCCACCATGCGCAAGAGTTCAGAC
ATGTCCAAGCCCGCGGGGTCTTCCACGACGGCCGTGCCATCCGCCAGGCC
CACGACCCGAGCGCGGGCCCCGTAGTCGCGTGCGAGTATTTTGATCATGT
TCCCTGCCACATCTCCGTCTGTGCCACCCGTTAGCTTGATTGTGAAAGGG
TCTTCGTGCGGGTTGAGGCCCAAGCGCTTCAGACCCACTGCCAAGAAGAC
AGCGATACCTTCACTGGTCACGCCGTAGACCTTGTGATTGATGCCCGTGT
CGGCTTTGGAGGACATAAAGGTGGAAGGATTGGTGTAGCTCCGCTTCTGT
GCCTGGTTCACGATCCACGTGATGTCCTGCGGGATGATCTGCTCGTCGGG
ACCCAGGTACAGGTACTCGCGGCGGCCCCAGTAGTCGACAATATGGGCCT
TggtctcctccgtctcggTGATGAGGTCAAGCAGCCCGTCCACGAAGCCT
TTCACGGCCTTTCGCTTGGCGAAATCTCGAGACTTGGCCTGGACGTTCAC
GGtgtccaccagcaccactgCCTTGGATCCACCCTCGGGAATGTCCTTGT
TTTTGAGTTGCTGAGCGTAGGCAAGTCCGTAGGCCTCGTCGAATTGCCTG
GCCGACTCTGCGAGTCACAGATAAATTCAGATAAGAAGCAGAGAAGAAAC
AAGTCAACTTTTCCACGCACACTTTCTAGTACCTCAAAAAGGCGCTACGG
TCCATGTCGACCTCCGCAAGTCATTCATGTTAAGTTAATTCATACAGGCA
TTAAGACGCAATAGTA

Coding sequence (CDS) from alignment at CM002457.1:655053..658218+

>rna1448 ID=rna1448|Name=rna1448|organism=Nannochloropsis gaditana|type=CDS|length=858bp|location=Sequence derived from alignment at CM002457.1:655053..658218+ (Nannochloropsis gaditana)
ATGTCTGGCAATAAGTGTGCGGTCGCAGGAGCATATCATGACCATGATTT
CGATTTCGATGCATATCGAAGGTCGACCGAACCAACCCTGGCCACGGTCT
CTTGCCTTCCTCGGGAAGACATCTTCCGAGCTGAGTCTCCACCAGTACAA
GCATGGGAATCTTTTTTCCATCGACACTCCGATAAAGCTacttttttcaa
aaaaagaCGATACTTGGTATTGGAATTTCCGGAACTCCTGGACAAGGCTG
GGGAATACGCAGCCACAAATAATTTCAAGTGCCGATTGCTCGAGATTGGA
TGTGGGTACGGCTCAAGCCTTGCAGCCATTATGGAGGCAAACCCCGACTT
GATATGTTTTGCCTGCGATCTTAGCACCACAGCCTTGCATCTATTAGATA
GAGCGCTCGGAGACATTTACAAGCAGCGCTTGACAGCTTTCATCTGCGAC
GTGGTAAAAAATGATATACCTTGTCATCTAGTTCTTCCAGGAAGCATGGA
CTTTGTCCTGATGACTTTCATGCTTTCGGCAATtggcaagaaagaggagc
atCAAGCCGTCTTCCACCGTGCTTATGCAGCCTTACGCCCTGGAGGATTG
CTCTTATTTCGAGACTATGGTTGGTGTGATGCGAAAATGGTACGAAGCAG
GAATAGGATCGGGCAACAGTTGTACAAACGTGCAGACGGCACGCTCGCGT
ACTTTTTCACGGCGGAAGATATCAATCAGCTGGCAAGTACAGCTGGCTTT
CATGTACAAGAATGCAAGTATGCCACTGTTCTATCCAAGAACAGAGCGAC
GAGAGAGGAACTCAAGCGCGTGTTTGTACACGCCAAGCTACAGCGTGGCG
ATGGTTGA

Synonyms

Publications