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Properties
| Property Name | Value |
|---|
| Product | pseudouridine synthase |
| Orig transcript id | gnl|cribi|Naga_100203g8.2706.mrna |
| Orig protein id | gnl|cribi|Naga_100203g8.2706 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:652114..655067 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1447 ID=rna1447|Name=rna1447|organism=Nannochloropsis gaditana|type=mRNA|length=1360bp
CATTAGTACCCCCACAAAGCGTCGTGGCTGAGCCGAGACAGTCAGGAGAG
GCCGTCGCAGCATAGTGTTGAGGTGAGTAAGATCGACGGGTCGCCCCACA
GGTTGAGACGGGCAGACAGGATAGGAAGCGATTTCGTCTCCGGGGGCCTG
AACCCTGTACTCGTTTGCCAAAAAATGCGTGCCGGTAAAGACCAAAAAGT
GAGTCCACGCGTATTCATGTGTGTGCGAATTCCGAGTGCGTCTCTCGGCG
GCGCCCATTGTGTGGCCGCCCCTCCCGCCGCAAGTGTACGTGCCACGGGG
GTGAAGAAGCCGAAGAAGCCGCCCGTCGTTGGGGGGAAACGGGCTTTTAA
ATTTTTTTTTCACGATACTTATTGCGCACAAAGGTTTGTACACAGGTTCG
AGCACCGCACACATACTATGGCAACCAAGGAATTTCTCGAAACGTATCAG
AAAAAAATCATGGAGTTGCGCAGCGTGATGCCTGCACGCATCGCCGAGGT
GGAGGCCGTGCTCCAGGCAGCGCCCTTCGGGAAGAGCGTTTCTGAGGTTA
TGACGCACTCTCGGGCTGCGGTGGCCGCCAACGCCGAGGTGTCCGGGTCT
TTGGGCACAGCGCGTGATGTGCTCCTCCGCACTGTGGAAGACTTGCATCT
AGTGTGCACGTGGCTTAAGCTTAAAGTGCCCAAAGTCAGTGACGGGGGCA
ATTTCGGGGTGGCTGTGATACTGGAGGTGGTGAAGACGATTGAGGGCAAG
ATAGAGGTCTTGAACAAGGGGCTGGACGAGCTCCCGAACTACTTCTCAGA
GCGAGCGAGCGCTGTGGAAAAGTTGGTGGCGCGCACATCGACGGACGTCA
AAGAAAGCAAGAGCAAGAGCAGCACCACGGGCGGCAAGGACGGAGACGAG
ACGAAGGGTAGCGAGTCCCAGACAGAGGAGAAGTCCGTCAAGAAGAGCGA
GTTCCTTCCTGACCAGCTTGAGCATTTGGTGGCGCTGGATGCTAAATTCT
TCACTATCTTCAAGCGAGATGTCGAGCTGTGCCACTCGGCCTACCTGACG
TGCTTCGACATCCTCGAGAAGAATTTTACGCTCTTGAACGCACCTCGCGG
GGACAAGGGCGACTCGTCGCATCTATCCATGTTCTAAGGGATGACAACGT
TGTAGCAGAACGCCCTCGAGTCGTCGCCGTCCTCTGAAGGTGATGCTGAG
AAGATGGCGAACGCATGCCGTGGCGGGTGCTCGGGAGAGGGAAAGATGGG
AGAGAGTCCATAGGGACGCTTCACTGAGAGTCTTCTGGAAAGAAGAATAT
CTCTGCCTTCGTGCAAGAAGGCCGCATTCTTCCTCGTTATACAATTGGAG
TTTCGTGGCA back to topprotein sequence of rna1447 >rna1447-protein ID=rna1447-protein|Name=rna1447|organism=Nannochloropsis gaditana|type=polypeptide|length=420bp
MTTPKLWRFIAALDLIFCTTPAMSFLHVPLQLKISEPVYENQGRRRDQDK
NSGGVNQVYVKHQAPASSYNQIHRNSFLYLTKSPLLRAHGAGHVPTTESL
HALDLSAAAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHAEVLGR
LHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYEDDDLVVINKPSD
VRMDVPQRKGVQGQRKWPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSAT
SGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDA
PIEKDPHSDFRMRIGPEGKSAQTQVEVLERGFLRLQGPHFNAPVSKLRLK
PITGRRHQLRVHTMSLGYGIVGDTYVGDWASYRMMLHAHKLGLPMAPDKH
LQLVTVDPFQALISPQPLTG back to topmRNA from alignment at CM002457.1:652114..655067- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1447 ID=rna1447|Name=rna1447|organism=Nannochloropsis gaditana|type=mRNA|length=2954bp|location=Sequence derived from alignment at CM002457.1:652114..655067- (Nannochloropsis gaditana)
GACACGACTGTCCGACGCAACAGACACTGACTGACTTTAACTTCCTTACT
TACTGGCTTTAACCTCCCGGCCGCAGGGACCACCACGTACTTCTCCGCAG
GGCGCGGAGCGTGATAAAAGACAGAGATTGATAAGTCACACGAAATGTAC
AGAACACATAGATGTAAACTTGGCTGAAAAGGTGATGACGACACCAAAGC
TTTGGCGTTTTATCGCAGCTTTGGACCTTATTTTTTGCACGACTCCTGCC
ATGTCTTTTCTTCATGTACCGCTTCAACTGAAAATTTCTGAGCCCGTCTA
CGAGAACCAGGGCAGAAGACGGGATCAGGACAAAAATTCGGGGGGGGTTA
ACCAAGTCTACGTCAAGCATCAGGCCCCGGCTTCCAGTTATAATCAAATT
CACAGGAATTCCTTCCTATACTTGACAAAGTCTCCACTCCTCCGAGCGCA
CGGAGCCGGTCATGTTCCAACCACTGAATCTCTTCACGCCCTGGACTTGT
CGGCGGCAGCCAAAGGCCAGACGGTTGAAGAAGTATTACTCCTGGCACAA
CTGCCGAGGGACATTGTTGCCAAAGCGTTGACATCTTTTCCAGGACTTCG
CGATTGTCATCCGCATGCTGAAGTCCTCGGCCGACTGCACCACCTTAATT
TCATCATCCAACAAGGAGTGTATTCCTTCTCTGAGGCCTTGCATTTGATT
GCCAATCAACCGCAGTTTCTGGAAATGCCTTTTTCGATAGTTTATGAAGA
CGATGATTTGGTTGTCATCAATAAACCCAGTGACGTGCGAATGGATGTGC
CCCAGCGGAAAGGCGTCCAAGGGCAACGGAAGTGGCCCATGGAGTTTACA
TGCTCAGATTGGCTCGATACTCCGGGGCTGATTGAGCCCCCGCTGGAAAA
AAAACGATTCTGCCACAATTTAGATTCGGCCACCTCTGGCATCCTTTGTG
TTGCTCGAAACCAGGCTGCGGCCGCGCGAGTAGTGGAGCTGTTTTCGAAG
CGGATGGTGGAAAAAGAATGTACGTCGAATCCCACGTGCTTAACTCATGT
CGTTCTCGTGGTAGGCAATATACAATGAGTCTAGATACTCGCCTGATTTC
TTCTCGTAATCAATCAGAGACTTATCTAGGCTCTTCATCCTTTCTGCTTT
CCTTCAGACCTTGCGGTCGTGTTCGGCCATGTGTCCTCGACCGCCGACAG
CGACACGCTTTTTATCGATGCTCCAATCGAAAAAGATCCGCATAGTGATT
TCAGGATGCGAATCGGACCAGAGGGAAAATCTGCGCAGACACAAGTAGAG
GTCTTGGAGAGAGGATTTCTGAGGTTGCAAGGGCCGCATTTCAACGCTCC
CGTCTCAAAACTCAGACTAAAGCCTATCACTGGTCGGCGTCATCAATTGA
GGGTTCACACCATGTCCTTAGGCTACGGTATAGTGGGGGACACCTACGTA
GGGGACTGGGCGAGCTACCGGATGATGCTGCACGCGCACAAGCTCGGCCT
CCCCATGGCCCCCGACAAGCATCTACAGCTGGTCACGGTGGACCCTTTCC
AAGCGCTGATTTCTCCACAGCCGCTGACTGGGTGACAAAATAAGGGAGAC
AACGAGTCTCCACCTCACCACGTGTCTCAGAGCAGACAAGCTGGTGTGTT
ACGATTGAGGTATGCAGCTGTTAAACAACAAGGTGTGACAAAGAAACAAC
ACGTCAACTTTTTCATGCCACGAAACTCCAATTGTATAACGAGGAAGAAT
GCGGCCTTCTTGCACGAAGGCAGAGATATTCTTCTTTCCAGAAGACTCTC
AGTGAAGCGTCCCTATGGACTCTCTCCCATCTTTCCCTCTCCCGAGCACC
CGCCACGGCATGCGTTCGCCATCTTCTCAGCATCACCTTCAGAGGACGGC
GACGACTCGAGGGCGTTCTGCTACAACGTTGTCATCCCTTAGAACATGGA
TAGATGCGACGAGTCGCCCTTGTCCCCGCGAGGTGCGTTCAAGAGCGTAA
AATTCTTCTCGAGGATGTCGAAGCACGTCAGGTAGGCCGAGTGGCACAGC
TCGACATCTCGCTTGAAGATAGTGAAGAATTTAGCATCCAGCGCCACCAA
ATGCTCAAGCTGGTCAGGAAGGAACTCGCTCTTCTTGACGGACTTCTCCT
CTGTCTGGGACTCGCTACCCTTCGTCTCGTCTCCGTCCTTGCCGCCCGTG
GTGCTGCTCTTGCTCTTGCTTTCTTTGACGTCCGTCGATGTGCGCGCCAC
CAACTTTTCCACAGCGCTCGCTCGCTCTGAGAAGTAGTTCGGGAGCTCGT
CCAGCCCCTTGTTCAAGACCTCTATCTTGCCCTCAATCGTCTTCACCACC
TCCAGTATCACAGCCACCCCGAAATTGCCCCCGTCACTGACTTTGGGCAC
TTTAAGCTTAAGCCACGTGCACACTAGATGCAAGTCTTCCACAGTGCGGA
GGAGCACATCACGCGCTGTGCCCAAAGACCCGGACACCTCGGCGTTGGCG
GCCACCGCAGCCCGAGAGTGCGTCATAACCTCAGAAACGCTCTTCCCGAA
GGGCGCTGCCTGGAGCACGGCCTCCACCTCGGCGATGCGTGCAGGCATCA
CGCTGCGCAACTCCATGATTTTTTTCTACAGCCACGAACAGAAGACGTGA
GTATTGGTTAGGATGGAGATGGAGTGGTGGCACTTCATCAGAAAGAAAGT
CTTCGAGAGGCCCCAGGACAAAAAGAACACGCGACACAATGTCGAGGTCA
ATGAGGGGCGAATACATTAAATTTCATTATGTTGAACGAACAATTAACTA
AATGGCGTGCTGGCTGATAATGGTACGCAAAGGGCTACCAAAAACTCGCA
CACAACGTTGGCACGTAGTCGAGGAAAAGAAGGGGAGACTGCCCCCCCCT
TTCCTGTGGACATACCTGATACGTTTCGAGAAATTCCTTGGTTGCCATAG
TATG back to topCoding sequence (CDS) from alignment at CM002457.1:652114..655067- >rna1447 ID=rna1447|Name=rna1447|organism=Nannochloropsis gaditana|type=CDS|length=2526bp|location=Sequence derived from alignment at CM002457.1:652114..655067- (Nannochloropsis gaditana)
ACCTTGCGGTCGTGTTCGGCCATGTGTCCTCGACCGCCGACAGCGACACG
CTTTTTATCGATGCTCCAATCGAAAAAGATCCGCATAGTGATTTCAGGAT
GCGAATCGGACCAGAGGGAAAATCTGCGCAGACACAAGTAGAGGTCTTGG
AGAGAGGATTTCTGAGGTTGCAAGGGCCGCATTTCAACGCTCCCGTCTCA
AAACTCAGACTAAAGCCTATCACTGGTCGGCGTCATCAATTGAGGGTTCA
CACCATGTCCTTAGGCTACGGTATAGTGGGGGACACCTACGTAGGGGACT
GGGCGAGCTACCGGATGATGCTGCACGCGCACAAGCTCGGCCTCCCCATG
GCCCCCGACAAGCATCTACAGCTGGTCACGGTGGACCCTTTCCAAGCGCT
GATTTCTCCACAGCCGCTGACTGGGTGAATGACGACACCAAAGCTTTGGC
GTTTTATCGCAGCTTTGGACCTTATTTTTTGCACGACTCCTGCCATGTCT
TTTCTTCATGTACCGCTTCAACTGAAAATTTCTGAGCCCGTCTACGAGAA
CCAGGGCAGAAGACGGGATCAGGACAAAAATTCGGGGGGGGTTAACCAAG
TCTACGTCAAGCATCAGGCCCCGGCTTCCAGTTATAATCAAATTCACAGG
AATTCCTTCCTATACTTGACAAAGTCTCCACTCCTCCGAGCGCACGGAGC
CGGTCATGTTCCAACCACTGAATCTCTTCACGCCCTGGACTTGTCGGCGG
CAGCCAAAGGCCAGACGGTTGAAGAAGTATTACTCCTGGCACAACTGCCG
AGGGACATTGTTGCCAAAGCGTTGACATCTTTTCCAGGACTTCGCGATTG
TCATCCGCATGCTGAAGTCCTCGGCCGACTGCACCACCTTAATTTCATCA
TCCAACAAGGAGTGTATTCCTTCTCTGAGGCCTTGCATTTGATTGCCAAT
CAACCGCAGTTTCTGGAAATGCCTTTTTCGATAGTTTATGAAGACGATGA
TTTGGTTGTCATCAATAAACCCAGTGACGTGCGAATGGATGTGCCCCAGC
GGAAAGGCGTCCAAGGGCAACGGAAGTGGCCCATGGAGTTTACATGCTCA
GATTGGCTCGATACTCCGGGGCTGATTGAGCCCCCGCTGGAAAAAAAACG
ATTCTGCCACAATTTAGATTCGGCCACCTCTGGCATCCTTTGTGTTGCTC
GAAACCAGGCTGCGGCCGCGCGAGTAGTGGAGCTGTTTTCGAAGCGGATG
GTGGAAAAAGAATACCTTGCGGTCGTGTTCGGCCATGTGTCCTCGACCGC
CGACAGCGACACGCTTTTTATCGATGCTCCAATCGAAAAAGATCCGCATA
GTGATTTCAGGATGCGAATCGGACCAGAGGGAAAATCTGCGCAGACACAA
GTAGAGGTCTTGGAGAGAGGATTTCTGAGGTTGCAAGGGCCGCATTTCAA
CGCTCCCGTCTCAAAACTCAGACTAAAGCCTATCACTGGTCGGCGTCATC
AATTGAGGGTTCACACCATGTCCTTAGGCTACGGTATAGTGGGGGACACC
TACGTAGGGGACTGGGCGAGCTACCGGATGATGCTGCACGCGCACAAGCT
CGGCCTCCCCATGGCCCCCGACAAGCATCTACAGCTGGTCACGGTGGACC
CTTTCCAAGCGCTGATTTCTCCACAGCCGCTGACTGGGTGAATGACGACA
CCAAAGCTTTGGCGTTTTATCGCAGCTTTGGACCTTATTTTTTGCACGAC
TCCTGCCATGTCTTTTCTTCATGTACCGCTTCAACTGAAAATTTCTGAGC
CCGTCTACGAGAACCAGGGCAGAAGACGGGATCAGGACAAAAATTCGGGG
GGGGTTAACCAAGTCTACGTCAAGCATCAGGCCCCGGCTTCCAGTTATAA
TCAAATTCACAGGAATTCCTTCCTATACTTGACAAAGTCTCCACTCCTCC
GAGCGCACGGAGCCGGTCATGTTCCAACCACTGAATCTCTTCACGCCCTG
GACTTGTCGGCGGCAGCCAAAGGCCAGACGGTTGAAGAAGTATTACTCCT
GGCACAACTGCCGAGGGACATTGTTGCCAAAGCGTTGACATCTTTTCCAG
GACTTCGCGATTGTCATCCGCATGCTGAAGTCCTCGGCCGACTGCACCAC
CTTAATTTCATCATCCAACAAGGAGTGTATTCCTTCTCTGAGGCCTTGCA
TTTGATTGCCAATCAACCGCAGTTTCTGGAAATGCCTTTTTCGATAGTTT
ATGAAGACGATGATTTGGTTGTCATCAATAAACCCAGTGACGTGCGAATG
GATGTGCCCCAGCGGAAAGGCGTCCAAGGGCAACGGAAGTGGCCCATGGA
GTTTACATGCTCAGATTGGCTCGATACTCCGGGGCTGATTGAGCCCCCGC
TGGAAAAAAAACGATTCTGCCACAATTTAGATTCGGCCACCTCTGGCATC
CTTTGTGTTGCTCGAAACCAGGCTGCGGCCGCGCGAGTAGTGGAGCTGTT
TTCGAAGCGGATGGTGGAAAAAGAAT back to top
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