EWM29222.1, cds1444 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29222.1 vs. NCBI_GenBank
Match: gi|585111743|gb|EWM29222.1| (pseudouridine synthase [Nannochloropsis gaditana]) HSP 1 Score: 872.078 bits (2252), Expect = 0.000e+0 Identity = 420/420 (100.00%), Postives = 420/420 (100.00%), Query Frame = 0
Query: 1 MTTPKLWRFIAALDLIFCTTPAMSFLHVPLQLKISEPVYENQGRRRDQDKNSGGVNQVYVKHQAPASSYNQIHRNSFLYLTKSPLLRAHGAGHVPTTESLHALDLSAAAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHAEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYEDDDLVVINKPSDVRMDVPQRKGVQGQRKWPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPHSDFRMRIGPEGKSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGDTYVGDWASYRMMLHAHKLGLPMAPDKHLQLVTVDPFQALISPQPLTG 420
MTTPKLWRFIAALDLIFCTTPAMSFLHVPLQLKISEPVYENQGRRRDQDKNSGGVNQVYVKHQAPASSYNQIHRNSFLYLTKSPLLRAHGAGHVPTTESLHALDLSAAAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHAEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYEDDDLVVINKPSDVRMDVPQRKGVQGQRKWPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPHSDFRMRIGPEGKSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGDTYVGDWASYRMMLHAHKLGLPMAPDKHLQLVTVDPFQALISPQPLTG
Sbjct: 1 MTTPKLWRFIAALDLIFCTTPAMSFLHVPLQLKISEPVYENQGRRRDQDKNSGGVNQVYVKHQAPASSYNQIHRNSFLYLTKSPLLRAHGAGHVPTTESLHALDLSAAAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHAEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYEDDDLVVINKPSDVRMDVPQRKGVQGQRKWPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPHSDFRMRIGPEGKSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGDTYVGDWASYRMMLHAHKLGLPMAPDKHLQLVTVDPFQALISPQPLTG 420
BLAST of EWM29222.1 vs. NCBI_GenBank
Match: gi|873229976|emb|CEM11775.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 238.039 bits (606), Expect = 1.846e-71 Identity = 139/320 (43.44%), Postives = 182/320 (56.88%), Query Frame = 0
Query: 103 LDLSAAAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHAEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYEDDDLVVINKPSDVRMDVPQRKGVQGQRKWPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPHSDFRMRIGPEGKSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGDTYVGDWA------SYRMMLHAHKLGLPMAPDKHLQ---LVTVDPFQALI 413
DLSAA + E L LA +P ++V A+ FPG+RD H EVL RL NF+IQ G + + LIANQP LE +V+E + VVI+KP +VRMDVP+ K K+ E T +DW P +K R CH LD ATSG+L + + + A R LFS+R K+YLA+V+GH S D +DA IE+DP+ +F M+I GK +QT V+VL+R L L+GP PV+KL L P TGRRHQLR+H +G+ IVGD + SYRM LHA++L LP D Q L DPF +
Sbjct: 43 FDLSAAEQAADGVEALELAGVPAEMVTAAVRRFPGVRDLHVEDEVLARLDQFNFLIQDGALTVEQTHRLIANQPWCLERAIKVVHECEGYVVIDKPDNVRMDVPRTKS----HKYDRELTVADWFKRRC---PSSDKVRPCHQLDHATSGVLVMGKTKEATGRCAVLFSQRKARKQYLALVYGHPS----WDETTVDAAIEEDPNHEFNMQISESGKPSQTAVKVLQRSHLALEGPLKGTPVAKLLLIPATGRRHQLRLHCRHVGHPIVGDYQYSAYGRGHEPPSYRMCLHAYRLELPFDDDGEGQPLVLEAPDPFHTHV 351
BLAST of EWM29222.1 vs. NCBI_GenBank
Match: gi|255077107|ref|XP_002502205.1| (pseudouridine synthase [Micromonas commoda] >gi|226517470|gb|ACO63463.1| pseudouridine synthase [Micromonas commoda]) HSP 1 Score: 189.889 bits (481), Expect = 6.350e-53 Identity = 123/327 (37.61%), Postives = 174/327 (53.21%), Query Frame = 0
Query: 95 PTTESLHALDLS---AAAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHA-EVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYEDDDLVVINKPSDVRMDVPQRKGVQGQ----RKWPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPHS--DFRMRIGPE-GKSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGDT-YVGDWASYRMMLHAHKLGLPM-APDKHLQLVTVDP 408
P L A L+ +G+ + E L A + + V +++ P + + EV R+++L F+ IA QPQ LE F +V+ED D V+NKP VR+D P +G G+ K+P + + DWL+ P + RFCH LD+ATSG+L A N+ AA +LF +R K YLA+VFGH + D +D P+ +DP FR R+ PE GK+ +T+ VL+RG L L+G PVSK+ + P+TGRRHQ+R+H G+ IVGD Y D S+R LHAHKL LP P +Q V +P
Sbjct: 38 PENPGLDAAGLNIRRGGVEGRDLRETLANAGMTPEQVRDVISAHPQVDTRYDLVNEVQPRINYLRFLDDNDRLDGESVSSCIARQPQSLERDFHLVHEDADYAVVNKPWCVRLDTP--RGWPGKVRFTPKYPGDLSVEDWLER---RYPDWDTVRFCHQLDNATSGVLVAASNKRAAGAAAKLFRERRARKTYLAIVFGH----PEQDEWTVDVPMGRDPDDPKGFRERVDPEHGKACETRFRVLKRGRLNLRGKFEGVPVSKVEVTPVTGRRHQIRLHLQFSGHPIVGDNAYSQDTDSFRTFLHAHKLTLPFDEPRGTMQFVAPEP 355
BLAST of EWM29222.1 vs. NCBI_GenBank
Match: gi|303280505|ref|XP_003059545.1| (pseudouridine synthase [Micromonas pusilla CCMP1545] >gi|226459381|gb|EEH56677.1| pseudouridine synthase [Micromonas pusilla CCMP1545]) HSP 1 Score: 178.333 bits (451), Expect = 6.414e-48 Identity = 117/305 (38.36%), Postives = 158/305 (51.80%), Query Frame = 0
Query: 108 AAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHAEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYEDDDLVVINKPSDVRMDVPQR-KGVQGQR------KWPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPHS--DFRMRI-------GPEGKSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGD-TYVGDWASYRMMLHAHKLGLPM 395
+ +G V VL A L V TS P L EV+ R+++L F+ IA QP LE F +V+E +D V+NKP VR+D P+ K G K+P + + DWL+ P + RF H LD+ATSG+L A N+ AA R +LF +R K Y+A+VFGH D DA + +DP F+ R+ G EGK+++T+ +VL+RG L+G H A VSK+ + PITGRRHQ+RVH GY IVGD Y D ++R LHAH L LP
Sbjct: 103 SVEGDDVRAVLANAGLSPTQVDAVTTSHPDLETYDLAREVVPRVNYLRFLHDNDRLGGESVADAIARQPHSLERRFHLVHECEDYAVVNKPWCVRLDTPRGWKDAAGNPLNRFTPKYPGDLSVEDWLEE---RYPGWDTVRFVHQLDNATSGVLVAASNKRAAGRAAKLFRERAARKAYIALVFGHPRE----DEWTCDAKLGRDPSDPKGFKERVVVDGEEEGVEGKASETRFKVLQRGTFALRGKHEGADVSKVLVTPITGRRHQIRVHLAHGGYPIVGDAAYSEDKDTFRTFLHAHALTLPF 400
BLAST of EWM29222.1 vs. NCBI_GenBank
Match: gi|693498467|emb|CEF99063.1| (Pseudouridine synthase, RsuA/RluB/C/D/E/F [Ostreococcus tauri]) HSP 1 Score: 162.54 bits (410), Expect = 1.170e-42 Identity = 115/332 (34.64%), Postives = 167/332 (50.30%), Query Frame = 0
Query: 106 SAAAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHAEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYE--DDDLVVINKPSDVRMDVPQ------RKGVQGQRK-----WPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPHS--DFRMRIGPEG-KSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGDT--YVGDWASYRMMLHAHKLGLPMAPDKHLQLVTVDP--FQALISPQP 417
S+ G+T +L+ V + L P + E+ R+ +L F+ + G A L QP LE + VYE D + +NKP VR+D P+ G ++K W + +C DWL+ P RFCH LD+ATSG++ A ++AAA +LF R +K YLAVV+G + D A + KDP+ FR R+ EG K+++T+ +VL RG+ L G H V+ L+ KP+TGRRHQ+RVH G+ I+GD Y G S+RM LHA +L +P PD+ L T P F+ ++S P
Sbjct: 14 SSVEHGETAASLLVKRGADARAVEEMLLRHPEVNAYDCATEIAPRMSYLEFLERGGELGSETAAALALRQPGILERKYETVYECFDKAYIAVNKPFAVRLDTPRGWTESDADGNVTEKKRFEPRWEGDASCEDWLNATY----PNMHHRFCHQLDTATSGVILTAHTKSAAAAAAKLFRDRKAKKTYLAVVYGW----PERDEWTTTAKLGKDPNCPKGFRERVDEEGGKASETRFKVLRRGYCTLDGAHRGIKVTLLQCKPVTGRRHQIRVHLQHSGFPILGDIAYYSGVSDSFRMFLHALELVMPF-PDETLTFKTDPPLAFELVVSADP 336
BLAST of EWM29222.1 vs. NCBI_GenBank
Match: gi|1021068891|emb|SAL95036.1| (hypothetical protein [Absidia glauca]) HSP 1 Score: 159.073 bits (401), Expect = 1.563e-42 Identity = 96/246 (39.02%), Postives = 137/246 (55.69%), Query Frame = 0
Query: 179 LEMPFSIVYEDDDLVVINKPSDVRMDVPQRKGVQGQRKWPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHV-------SSTADSDTLFIDAPIEKDPHSDFRMRIGPEGKSAQTQVEVLERGFL--RLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGD-TYVGDWA-SYRMMLHAHKLGLPMAPDKHLQLVTVDPFQALI 413
L+ P + Y DD V++KP D R +Q + PM+ + + PPL+ H +D ATSGI A + AAA+V +LF +R VEK YLA+V GH+ +T+ + +D PI+ DP FRM I P GK + T ++VLE+G+ Q P PV+K+ L P TGRRHQLRVH S+G+ IVGD Y + ++RMMLHA+K+ P++ + + T+DPF LI
Sbjct: 3 LQQPLKVAYHDDSYFVVDKPFDCR--------IQPDPQNPMDLSVEKLIQQQHPDLPPLKN---VHQIDYATSGIYVQALTRKAAAKVSKLFEQRKVEKTYLAIVRGHMIPDLLSAGTTSSPPPIVVDQPIDNDPSHPFRMAILPSGKPSFTTIQVLEQGYYYPSSQNPGLRIPVTKVALYPKTGRRHQLRVHLQSIGHPIVGDFNYEVPYTDTFRMMLHAYKIHFPLS-SGAISISTLDPFVDLI 236
BLAST of EWM29222.1 vs. NCBI_GenBank
Match: gi|612389865|ref|XP_007510453.1| (pseudouridine synthase [Bathycoccus prasinos] >gi|412990614|emb|CCO17986.1| pseudouridine synthase [Bathycoccus prasinos]) HSP 1 Score: 163.31 bits (412), Expect = 1.959e-42 Identity = 98/256 (38.28%), Postives = 143/256 (55.86%), Query Frame = 0
Query: 145 AEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYEDDDL--VVINKPSDVRMDVPQRKGVQGQRKWPMEF----TCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPHSDFRMRIGPEGKSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGD-TYVGDWASYRMMLHAHKLGL 393
E++ R+++L F+ ++ +A + QPQ LE F I++ED L V +NKP DVR+D P +G G+ ++ +F +C D+L+ P E RFCH LD+ATSG+L A + AA ++F +R +K Y AVVFG + T I E + ++R GK +T+ EVL+RG+L L+G H+N VS +R++ TGRRHQ+RVH G+ IVGD Y D +YR LHA L L
Sbjct: 58 GEIVPRINYLKFLQERNRLGNEDAKEFVLRQPQCLERKFQIIHEDLKLGYVALNKPFDVRLDTP--RGWPGKVRFTAKFDGDASCEDFLNA----RFPGEHVRFCHQLDNATSGVLLCALTKKAAGVAAKMFRERRTKKFYSAVVFGWPEEKFWTSTKKIGKDEEDETGFREKVREDEGGKECKTEFEVLKRGYLTLEGKHWNKRVSLVRVRIFTGRRHQIRVHLKDCGFPIVGDAAYADDEDTYRTFLHAEDLEL 307
BLAST of EWM29222.1 vs. NCBI_GenBank
Match: gi|1199293831|gb|OUS48913.1| (pseudouridylate synthase, 23S RNA-specific [Ostreococcus tauri]) HSP 1 Score: 162.54 bits (410), Expect = 2.063e-42 Identity = 115/332 (34.64%), Postives = 167/332 (50.30%), Query Frame = 0
Query: 106 SAAAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHAEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYE--DDDLVVINKPSDVRMDVPQ------RKGVQGQRK-----WPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPH--SDFRMRIGPEG-KSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGDT--YVGDWASYRMMLHAHKLGLPMAPDKHLQLVTVDP--FQALISPQP 417
S+ G+T +L+ V + L P + E+ R+ +L F+ + G A L QP LE + VYE D + +NKP VR+D P+ G ++K W + +C DWL+ P RFCH LD+ATSG++ A ++AAA +LF R +K YLAVV+G + D A + KDP+ FR R+ EG K+++T+ +VL RG+ L G H V+ L+ KP+TGRRHQ+RVH G+ I+GD Y G S+RM LHA +L +P PD+ L T P F+ ++S P
Sbjct: 47 SSVEHGETAASLLVKRGADARAVEEMLLRHPEVNAYDCATEIAPRMSYLEFLERGGELGSETAAALALRQPGILERKYETVYECFDKAYIAVNKPFAVRLDTPRGWTESDADGNVTEKKRFEPRWEGDASCEDWLNA----TYPNMHHRFCHQLDTATSGVILTAHTKSAAAAAAKLFRDRKAKKTYLAVVYGW----PERDEWTTTAKLGKDPNCPKGFRERVDEEGGKASETRFKVLRRGYCTLDGAHRGIKVTLLQCKPVTGRRHQIRVHLQHSGFPILGDIAYYSGVSDSFRMFLHALELVMPF-PDETLTFKTDPPLAFELVVSADP 369
BLAST of EWM29222.1 vs. NCBI_GenBank
Match: gi|308807815|ref|XP_003081218.1| (COG0564: Pseudouridylate synthases, 23S RNA-specific (ISS) [Ostreococcus tauri]) HSP 1 Score: 162.54 bits (410), Expect = 2.085e-42 Identity = 115/332 (34.64%), Postives = 167/332 (50.30%), Query Frame = 0
Query: 106 SAAAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHAEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYE--DDDLVVINKPSDVRMDVPQ------RKGVQGQRK-----WPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPHS--DFRMRIGPEG-KSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGDT--YVGDWASYRMMLHAHKLGLPMAPDKHLQLVTVDP--FQALISPQP 417
S+ G+T +L+ V + L P + E+ R+ +L F+ + G A L QP LE + VYE D + +NKP VR+D P+ G ++K W + +C DWL+ P RFCH LD+ATSG++ A ++AAA +LF R +K YLAVV+G + D A + KDP+ FR R+ EG K+++T+ +VL RG+ L G H V+ L+ KP+TGRRHQ+RVH G+ I+GD Y G S+RM LHA +L +P PD+ L T P F+ ++S P
Sbjct: 47 SSVEHGETAASLLVKRGADARAVEEMLLRHPEVNAYDCATEIAPRMSYLEFLERGGELGSETAAALALRQPGILERKYETVYECFDKAYIAVNKPFAVRLDTPRGWTESDADGNVTEKKRFEPRWEGDASCEDWLNA----TYPNMHHRFCHQLDTATSGVILTAHTKSAAAAAAKLFRDRKAKKTYLAVVYGW----PERDEWTTTAKLGKDPNCPKGFRERVDEEGGKASETRFKVLRRGYCTLDGAHRGIKVTLLQCKPVTGRRHQIRVHLQHSGFPILGDIAYYSGVSDSFRMFLHALELVMPF-PDETLTFKTDPPLAFELVVSADP 369
BLAST of EWM29222.1 vs. NCBI_GenBank
Match: gi|1178058919|gb|ORE13581.1| (pseudouridine synthase [Rhizopus microsporus]) HSP 1 Score: 156.762 bits (395), Expect = 6.451e-42 Identity = 91/239 (38.08%), Postives = 136/239 (56.90%), Query Frame = 0
Query: 183 FSIVYEDDDLVVINKPSDVRMDVPQRKGVQGQRKWPMEFTCSDWLDTPGLIE--PPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPHSDFRMRIGPEGKSAQTQVEVLERGFLRLQ----GPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGD-TYVGDWA-SYRMMLHAHKLGLPMAPDKHLQLVTVDPFQALI 413
++++D++ +++NKP D+R+ + +D L E P + K R H LD ATSG+ +A ++AAA F +R+V+K YLA+V GH+ +D +D PIE DP DFRMRI P G+SA+T V VL+RG+ G PV+K+RL PI+GRRHQLR+H LG+ I+GD Y ++ ++RMMLHAH + D+ + + DPF++LI
Sbjct: 2 LKVIHKDNNWLIVNKPYDMRI---------------QSYNSTDPSVESILQEKYPDIPKFRNVHQLDYATSGVYVLALTKSAAALAARQFQQRLVKKTYLALVNGHMP----NDVYLVDQPIEDDPDHDFRMRISPTGRSAETHVHVLQRGYYNYNEDKTGMEKRIPVTKVRLHPISGRRHQLRLHLKYLGHPIIGDYNYETEYTDTFRMMLHAHSIRFNTG-DQISEFIAEDPFESLI 220 The following BLAST results are available for this feature:
BLAST of EWM29222.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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