EWM29222.1, cds1444 (CDS) Nannochloropsis gaditana

Overview
NameEWM29222.1
Unique Namecds1444
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:654049..654883 -
Alignment locationCM002457.1:653483..653910 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29222.1
Productpseudouridine synthase
Orig transcript idgnl|cribi|Naga_100203g8.2706.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:654049..654883 -
CM002457.1supercontigCM002457.1:653483..653910 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR006145PsdUridine_synth_RsuA/RluD
Homology
BLAST of EWM29222.1 vs. NCBI_GenBank
Match: gi|585111743|gb|EWM29222.1| (pseudouridine synthase [Nannochloropsis gaditana])

HSP 1 Score: 872.078 bits (2252), Expect = 0.000e+0
Identity = 420/420 (100.00%), Postives = 420/420 (100.00%), Query Frame = 0
Query:    1 MTTPKLWRFIAALDLIFCTTPAMSFLHVPLQLKISEPVYENQGRRRDQDKNSGGVNQVYVKHQAPASSYNQIHRNSFLYLTKSPLLRAHGAGHVPTTESLHALDLSAAAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHAEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYEDDDLVVINKPSDVRMDVPQRKGVQGQRKWPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPHSDFRMRIGPEGKSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGDTYVGDWASYRMMLHAHKLGLPMAPDKHLQLVTVDPFQALISPQPLTG 420
            MTTPKLWRFIAALDLIFCTTPAMSFLHVPLQLKISEPVYENQGRRRDQDKNSGGVNQVYVKHQAPASSYNQIHRNSFLYLTKSPLLRAHGAGHVPTTESLHALDLSAAAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHAEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYEDDDLVVINKPSDVRMDVPQRKGVQGQRKWPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPHSDFRMRIGPEGKSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGDTYVGDWASYRMMLHAHKLGLPMAPDKHLQLVTVDPFQALISPQPLTG
Sbjct:    1 MTTPKLWRFIAALDLIFCTTPAMSFLHVPLQLKISEPVYENQGRRRDQDKNSGGVNQVYVKHQAPASSYNQIHRNSFLYLTKSPLLRAHGAGHVPTTESLHALDLSAAAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHAEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYEDDDLVVINKPSDVRMDVPQRKGVQGQRKWPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPHSDFRMRIGPEGKSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGDTYVGDWASYRMMLHAHKLGLPMAPDKHLQLVTVDPFQALISPQPLTG 420          
BLAST of EWM29222.1 vs. NCBI_GenBank
Match: gi|873229976|emb|CEM11775.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 238.039 bits (606), Expect = 1.846e-71
Identity = 139/320 (43.44%), Postives = 182/320 (56.88%), Query Frame = 0
Query:  103 LDLSAAAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHAEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYEDDDLVVINKPSDVRMDVPQRKGVQGQRKWPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPHSDFRMRIGPEGKSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGDTYVGDWA------SYRMMLHAHKLGLPMAPDKHLQ---LVTVDPFQALI 413
             DLSAA +     E L LA +P ++V  A+  FPG+RD H   EVL RL   NF+IQ G  +  +   LIANQP  LE    +V+E +  VVI+KP +VRMDVP+ K      K+  E T +DW        P  +K R CH LD ATSG+L + + + A  R   LFS+R   K+YLA+V+GH S     D   +DA IE+DP+ +F M+I   GK +QT V+VL+R  L L+GP    PV+KL L P TGRRHQLR+H   +G+ IVGD     +       SYRM LHA++L LP   D   Q   L   DPF   +
Sbjct:   43 FDLSAAEQAADGVEALELAGVPAEMVTAAVRRFPGVRDLHVEDEVLARLDQFNFLIQDGALTVEQTHRLIANQPWCLERAIKVVHECEGYVVIDKPDNVRMDVPRTKS----HKYDRELTVADWFKRRC---PSSDKVRPCHQLDHATSGVLVMGKTKEATGRCAVLFSQRKARKQYLALVYGHPS----WDETTVDAAIEEDPNHEFNMQISESGKPSQTAVKVLQRSHLALEGPLKGTPVAKLLLIPATGRRHQLRLHCRHVGHPIVGDYQYSAYGRGHEPPSYRMCLHAYRLELPFDDDGEGQPLVLEAPDPFHTHV 351          
BLAST of EWM29222.1 vs. NCBI_GenBank
Match: gi|255077107|ref|XP_002502205.1| (pseudouridine synthase [Micromonas commoda] >gi|226517470|gb|ACO63463.1| pseudouridine synthase [Micromonas commoda])

HSP 1 Score: 189.889 bits (481), Expect = 6.350e-53
Identity = 123/327 (37.61%), Postives = 174/327 (53.21%), Query Frame = 0
Query:   95 PTTESLHALDLS---AAAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHA-EVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYEDDDLVVINKPSDVRMDVPQRKGVQGQ----RKWPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPHS--DFRMRIGPE-GKSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGDT-YVGDWASYRMMLHAHKLGLPM-APDKHLQLVTVDP 408
            P    L A  L+      +G+ + E L  A +  + V   +++ P +   +    EV  R+++L F+              IA QPQ LE  F +V+ED D  V+NKP  VR+D P  +G  G+     K+P + +  DWL+      P  +  RFCH LD+ATSG+L  A N+ AA    +LF +R   K YLA+VFGH     + D   +D P+ +DP     FR R+ PE GK+ +T+  VL+RG L L+G     PVSK+ + P+TGRRHQ+R+H    G+ IVGD  Y  D  S+R  LHAHKL LP   P   +Q V  +P
Sbjct:   38 PENPGLDAAGLNIRRGGVEGRDLRETLANAGMTPEQVRDVISAHPQVDTRYDLVNEVQPRINYLRFLDDNDRLDGESVSSCIARQPQSLERDFHLVHEDADYAVVNKPWCVRLDTP--RGWPGKVRFTPKYPGDLSVEDWLER---RYPDWDTVRFCHQLDNATSGVLVAASNKRAAGAAAKLFRERRARKTYLAIVFGH----PEQDEWTVDVPMGRDPDDPKGFRERVDPEHGKACETRFRVLKRGRLNLRGKFEGVPVSKVEVTPVTGRRHQIRLHLQFSGHPIVGDNAYSQDTDSFRTFLHAHKLTLPFDEPRGTMQFVAPEP 355          
BLAST of EWM29222.1 vs. NCBI_GenBank
Match: gi|303280505|ref|XP_003059545.1| (pseudouridine synthase [Micromonas pusilla CCMP1545] >gi|226459381|gb|EEH56677.1| pseudouridine synthase [Micromonas pusilla CCMP1545])

HSP 1 Score: 178.333 bits (451), Expect = 6.414e-48
Identity = 117/305 (38.36%), Postives = 158/305 (51.80%), Query Frame = 0
Query:  108 AAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHAEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYEDDDLVVINKPSDVRMDVPQR-KGVQGQR------KWPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPHS--DFRMRI-------GPEGKSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGD-TYVGDWASYRMMLHAHKLGLPM 395
            + +G  V  VL  A L    V    TS P L       EV+ R+++L F+              IA QP  LE  F +V+E +D  V+NKP  VR+D P+  K   G        K+P + +  DWL+      P  +  RF H LD+ATSG+L  A N+ AA R  +LF +R   K Y+A+VFGH       D    DA + +DP     F+ R+       G EGK+++T+ +VL+RG   L+G H  A VSK+ + PITGRRHQ+RVH    GY IVGD  Y  D  ++R  LHAH L LP 
Sbjct:  103 SVEGDDVRAVLANAGLSPTQVDAVTTSHPDLETYDLAREVVPRVNYLRFLHDNDRLGGESVADAIARQPHSLERRFHLVHECEDYAVVNKPWCVRLDTPRGWKDAAGNPLNRFTPKYPGDLSVEDWLEE---RYPGWDTVRFVHQLDNATSGVLVAASNKRAAGRAAKLFRERAARKAYIALVFGHPRE----DEWTCDAKLGRDPSDPKGFKERVVVDGEEEGVEGKASETRFKVLQRGTFALRGKHEGADVSKVLVTPITGRRHQIRVHLAHGGYPIVGDAAYSEDKDTFRTFLHAHALTLPF 400          
BLAST of EWM29222.1 vs. NCBI_GenBank
Match: gi|693498467|emb|CEF99063.1| (Pseudouridine synthase, RsuA/RluB/C/D/E/F [Ostreococcus tauri])

HSP 1 Score: 162.54 bits (410), Expect = 1.170e-42
Identity = 115/332 (34.64%), Postives = 167/332 (50.30%), Query Frame = 0
Query:  106 SAAAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHAEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYE--DDDLVVINKPSDVRMDVPQ------RKGVQGQRK-----WPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPHS--DFRMRIGPEG-KSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGDT--YVGDWASYRMMLHAHKLGLPMAPDKHLQLVTVDP--FQALISPQP 417
            S+   G+T   +L+        V + L   P +       E+  R+ +L F+ + G      A  L   QP  LE  +  VYE  D   + +NKP  VR+D P+        G   ++K     W  + +C DWL+       P    RFCH LD+ATSG++  A  ++AAA   +LF  R  +K YLAVV+G      + D     A + KDP+    FR R+  EG K+++T+ +VL RG+  L G H    V+ L+ KP+TGRRHQ+RVH    G+ I+GD   Y G   S+RM LHA +L +P  PD+ L   T  P  F+ ++S  P
Sbjct:   14 SSVEHGETAASLLVKRGADARAVEEMLLRHPEVNAYDCATEIAPRMSYLEFLERGGELGSETAAALALRQPGILERKYETVYECFDKAYIAVNKPFAVRLDTPRGWTESDADGNVTEKKRFEPRWEGDASCEDWLNATY----PNMHHRFCHQLDTATSGVILTAHTKSAAAAAAKLFRDRKAKKTYLAVVYGW----PERDEWTTTAKLGKDPNCPKGFRERVDEEGGKASETRFKVLRRGYCTLDGAHRGIKVTLLQCKPVTGRRHQIRVHLQHSGFPILGDIAYYSGVSDSFRMFLHALELVMPF-PDETLTFKTDPPLAFELVVSADP 336          
BLAST of EWM29222.1 vs. NCBI_GenBank
Match: gi|1021068891|emb|SAL95036.1| (hypothetical protein [Absidia glauca])

HSP 1 Score: 159.073 bits (401), Expect = 1.563e-42
Identity = 96/246 (39.02%), Postives = 137/246 (55.69%), Query Frame = 0
Query:  179 LEMPFSIVYEDDDLVVINKPSDVRMDVPQRKGVQGQRKWPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHV-------SSTADSDTLFIDAPIEKDPHSDFRMRIGPEGKSAQTQVEVLERGFL--RLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGD-TYVGDWA-SYRMMLHAHKLGLPMAPDKHLQLVTVDPFQALI 413
            L+ P  + Y DD   V++KP D R        +Q   + PM+ +    +       PPL+     H +D ATSGI   A  + AAA+V +LF +R VEK YLA+V GH+        +T+    + +D PI+ DP   FRM I P GK + T ++VLE+G+     Q P    PV+K+ L P TGRRHQLRVH  S+G+ IVGD  Y   +  ++RMMLHA+K+  P++    + + T+DPF  LI
Sbjct:    3 LQQPLKVAYHDDSYFVVDKPFDCR--------IQPDPQNPMDLSVEKLIQQQHPDLPPLKN---VHQIDYATSGIYVQALTRKAAAKVSKLFEQRKVEKTYLAIVRGHMIPDLLSAGTTSSPPPIVVDQPIDNDPSHPFRMAILPSGKPSFTTIQVLEQGYYYPSSQNPGLRIPVTKVALYPKTGRRHQLRVHLQSIGHPIVGDFNYEVPYTDTFRMMLHAYKIHFPLS-SGAISISTLDPFVDLI 236          
BLAST of EWM29222.1 vs. NCBI_GenBank
Match: gi|612389865|ref|XP_007510453.1| (pseudouridine synthase [Bathycoccus prasinos] >gi|412990614|emb|CCO17986.1| pseudouridine synthase [Bathycoccus prasinos])

HSP 1 Score: 163.31 bits (412), Expect = 1.959e-42
Identity = 98/256 (38.28%), Postives = 143/256 (55.86%), Query Frame = 0
Query:  145 AEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYEDDDL--VVINKPSDVRMDVPQRKGVQGQRKWPMEF----TCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPHSDFRMRIGPEGKSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGD-TYVGDWASYRMMLHAHKLGL 393
             E++ R+++L F+ ++      +A   +  QPQ LE  F I++ED  L  V +NKP DVR+D P  +G  G+ ++  +F    +C D+L+       P E  RFCH LD+ATSG+L  A  + AA    ++F +R  +K Y AVVFG       + T  I    E +     ++R    GK  +T+ EVL+RG+L L+G H+N  VS +R++  TGRRHQ+RVH    G+ IVGD  Y  D  +YR  LHA  L L
Sbjct:   58 GEIVPRINYLKFLQERNRLGNEDAKEFVLRQPQCLERKFQIIHEDLKLGYVALNKPFDVRLDTP--RGWPGKVRFTAKFDGDASCEDFLNA----RFPGEHVRFCHQLDNATSGVLLCALTKKAAGVAAKMFRERRTKKFYSAVVFGWPEEKFWTSTKKIGKDEEDETGFREKVREDEGGKECKTEFEVLKRGYLTLEGKHWNKRVSLVRVRIFTGRRHQIRVHLKDCGFPIVGDAAYADDEDTYRTFLHAEDLEL 307          
BLAST of EWM29222.1 vs. NCBI_GenBank
Match: gi|1199293831|gb|OUS48913.1| (pseudouridylate synthase, 23S RNA-specific [Ostreococcus tauri])

HSP 1 Score: 162.54 bits (410), Expect = 2.063e-42
Identity = 115/332 (34.64%), Postives = 167/332 (50.30%), Query Frame = 0
Query:  106 SAAAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHAEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYE--DDDLVVINKPSDVRMDVPQ------RKGVQGQRK-----WPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPH--SDFRMRIGPEG-KSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGDT--YVGDWASYRMMLHAHKLGLPMAPDKHLQLVTVDP--FQALISPQP 417
            S+   G+T   +L+        V + L   P +       E+  R+ +L F+ + G      A  L   QP  LE  +  VYE  D   + +NKP  VR+D P+        G   ++K     W  + +C DWL+       P    RFCH LD+ATSG++  A  ++AAA   +LF  R  +K YLAVV+G      + D     A + KDP+    FR R+  EG K+++T+ +VL RG+  L G H    V+ L+ KP+TGRRHQ+RVH    G+ I+GD   Y G   S+RM LHA +L +P  PD+ L   T  P  F+ ++S  P
Sbjct:   47 SSVEHGETAASLLVKRGADARAVEEMLLRHPEVNAYDCATEIAPRMSYLEFLERGGELGSETAAALALRQPGILERKYETVYECFDKAYIAVNKPFAVRLDTPRGWTESDADGNVTEKKRFEPRWEGDASCEDWLNA----TYPNMHHRFCHQLDTATSGVILTAHTKSAAAAAAKLFRDRKAKKTYLAVVYGW----PERDEWTTTAKLGKDPNCPKGFRERVDEEGGKASETRFKVLRRGYCTLDGAHRGIKVTLLQCKPVTGRRHQIRVHLQHSGFPILGDIAYYSGVSDSFRMFLHALELVMPF-PDETLTFKTDPPLAFELVVSADP 369          
BLAST of EWM29222.1 vs. NCBI_GenBank
Match: gi|308807815|ref|XP_003081218.1| (COG0564: Pseudouridylate synthases, 23S RNA-specific (ISS) [Ostreococcus tauri])

HSP 1 Score: 162.54 bits (410), Expect = 2.085e-42
Identity = 115/332 (34.64%), Postives = 167/332 (50.30%), Query Frame = 0
Query:  106 SAAAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHAEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYE--DDDLVVINKPSDVRMDVPQ------RKGVQGQRK-----WPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPHS--DFRMRIGPEG-KSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGDT--YVGDWASYRMMLHAHKLGLPMAPDKHLQLVTVDP--FQALISPQP 417
            S+   G+T   +L+        V + L   P +       E+  R+ +L F+ + G      A  L   QP  LE  +  VYE  D   + +NKP  VR+D P+        G   ++K     W  + +C DWL+       P    RFCH LD+ATSG++  A  ++AAA   +LF  R  +K YLAVV+G      + D     A + KDP+    FR R+  EG K+++T+ +VL RG+  L G H    V+ L+ KP+TGRRHQ+RVH    G+ I+GD   Y G   S+RM LHA +L +P  PD+ L   T  P  F+ ++S  P
Sbjct:   47 SSVEHGETAASLLVKRGADARAVEEMLLRHPEVNAYDCATEIAPRMSYLEFLERGGELGSETAAALALRQPGILERKYETVYECFDKAYIAVNKPFAVRLDTPRGWTESDADGNVTEKKRFEPRWEGDASCEDWLNA----TYPNMHHRFCHQLDTATSGVILTAHTKSAAAAAAKLFRDRKAKKTYLAVVYGW----PERDEWTTTAKLGKDPNCPKGFRERVDEEGGKASETRFKVLRRGYCTLDGAHRGIKVTLLQCKPVTGRRHQIRVHLQHSGFPILGDIAYYSGVSDSFRMFLHALELVMPF-PDETLTFKTDPPLAFELVVSADP 369          
BLAST of EWM29222.1 vs. NCBI_GenBank
Match: gi|1178058919|gb|ORE13581.1| (pseudouridine synthase [Rhizopus microsporus])

HSP 1 Score: 156.762 bits (395), Expect = 6.451e-42
Identity = 91/239 (38.08%), Postives = 136/239 (56.90%), Query Frame = 0
Query:  183 FSIVYEDDDLVVINKPSDVRMDVPQRKGVQGQRKWPMEFTCSDWLDTPGLIE--PPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADSDTLFIDAPIEKDPHSDFRMRIGPEGKSAQTQVEVLERGFLRLQ----GPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGD-TYVGDWA-SYRMMLHAHKLGLPMAPDKHLQLVTVDPFQALI 413
              ++++D++ +++NKP D+R+                 +  +D      L E  P + K R  H LD ATSG+  +A  ++AAA     F +R+V+K YLA+V GH+     +D   +D PIE DP  DFRMRI P G+SA+T V VL+RG+        G     PV+K+RL PI+GRRHQLR+H   LG+ I+GD  Y  ++  ++RMMLHAH +      D+  + +  DPF++LI
Sbjct:    2 LKVIHKDNNWLIVNKPYDMRI---------------QSYNSTDPSVESILQEKYPDIPKFRNVHQLDYATSGVYVLALTKSAAALAARQFQQRLVKKTYLALVNGHMP----NDVYLVDQPIEDDPDHDFRMRISPTGRSAETHVHVLQRGYYNYNEDKTGMEKRIPVTKVRLHPISGRRHQLRLHLKYLGHPIIGDYNYETEYTDTFRMMLHAHSIRFNTG-DQISEFIAEDPFESLI 220          
The following BLAST results are available for this feature:
BLAST of EWM29222.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111743|gb|EWM29222.1|0.000e+0100.00pseudouridine synthase [Nannochloropsis gaditana][more]
gi|873229976|emb|CEM11775.1|1.846e-7143.44unnamed protein product [Vitrella brassicaformis C... [more]
gi|255077107|ref|XP_002502205.1|6.350e-5337.61pseudouridine synthase [Micromonas commoda] >gi|22... [more]
gi|303280505|ref|XP_003059545.1|6.414e-4838.36pseudouridine synthase [Micromonas pusilla CCMP154... [more]
gi|693498467|emb|CEF99063.1|1.170e-4234.64Pseudouridine synthase, RsuA/RluB/C/D/E/F [Ostreoc... [more]
gi|1021068891|emb|SAL95036.1|1.563e-4239.02hypothetical protein [Absidia glauca][more]
gi|612389865|ref|XP_007510453.1|1.959e-4238.28pseudouridine synthase [Bathycoccus prasinos] >gi|... [more]
gi|1199293831|gb|OUS48913.1|2.063e-4234.64pseudouridylate synthase, 23S RNA-specific [Ostreo... [more]
gi|308807815|ref|XP_003081218.1|2.085e-4234.64COG0564: Pseudouridylate synthases, 23S RNA-specif... [more]
gi|1178058919|gb|ORE13581.1|6.451e-4238.08pseudouridine synthase [Rhizopus microsporus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1447rna1447Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications