|
|
Properties
| Property Name | Value |
|---|
| Product | proteasome activator subunit 1 |
| Orig transcript id | gnl|cribi|Naga_100203g9.2712.mrna |
| Orig protein id | gnl|cribi|Naga_100203g9.2712 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002457.1 | supercontig | CM002457.1:651703..653352 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1446 ID=rna1446|Name=rna1446|organism=Nannochloropsis gaditana|type=mRNA|length=1568bp
ATGGGCGCCGCCGAGAGACGCACTCGGAATTCGCACACACATGAATACGC
GTGGACTCACTTTTTGGTCTTTACCGGCACGCATTTTTTGGCAAACGAGT
ACAGGGTTCAGGCCCCCGGAGACGAAATCGCTTCCTATCCTGTCTGCCCG
TCTCAACCTGTGGGGCGACCCGTCGATCTTACTCACCTCAACACTATGCT
GCGACGGCCTCTCCTGACTGTCTCGGCTCAGCCACGACGCTTTGTGGGGG
TACTAATGTCCAGATTTGGCACGCGCGATGCCTCAACGTTGGTGGTGGCC
GAACACTCCGAGTCCAAGGGGACTCTGAGCCCCAGCACGCTGTGCACCAT
CACGGCCGCGGGTCAACTGCAGAATCCTGTGACGGTCCTGGTAGCTGGGG
GGAAGGGCGTCAACGCAGTGGCTCAGCAGGCTGCCCAGGTTCCAGGTGTC
AGCAAGGTCCTTGTGGCGGAGCACGCTGCCTACGAAAAGGGGATAGCCGA
GAATCTCAGCCAGGCGGTCGTGGCCACACACAAAGCTGGTGATTATTCGC
ATATTTTAGCTCCTTCCTCCATGCGCTCCAAGAATTACGTCCCCAGGGTA
GCAGCCTTACTGGATTCGCAGCCTATCACCGACGTGATCGCTATCAAGGA
CCAGGCTACCTTCGTGCGCCCCATGTACGCGGGAAACGCCATCGCCACCG
TGACCACATCCGAGCCTCTGAAGATCCTTACAGTGCGCACCACCGCTTTT
GAGAAGGCACCCTCCACAGGCGGAAGCGCGGCTACGGAGGTAGCACCGGC
GGTGGCGAAGCCGGAGGCAGGCTTGAGTGCCTTCCTGAGTGAGAGCGTCA
GTCAGTCGGCTCGCCCGGAGCTGTCTTCGGCCAGGGTGGTGATCTCAGGT
GGACGCGGGCTCAAGACCAAAGAGCACTTTCAGATGTTGGAGGCGCTCGC
TGACAAGCTAAAGGGTGCAGTGGGCGCCTCTCGCGCGGCCGTGGACGAGT
TTCACATGCCCAACGAGCTCCAGGTAGGTCAGACCGGGAAGGTGGTAGCG
CCGGACCTCTACTTGGCTGTGGGCATCTCGGGCGCCATCCAGCATCTCTC
AGGCATGAAGGACAGCAAGGTGATCGTGGCCATCAACAAGGACAAGGAGG
CGCCCATCTTCCAAGTGGCCGACTACGGGCTTGTCGCGGACCTCTTCCAG
GCGGTCCCGGAGCTCACTGACAAGGTTTGAGTTGCGAGAAATACTGGGTG
AGGGGACGGGGACGTCGGGCCGTCTGGATGCGCTCGCAGAGGCTTGCGAG
CTTCCTTGCGTGCAGACTGGCACAGACATGTGCAGAAGCAGGTCTCCTTA
ATGATGGGAAGAGTGGTATGTGAAAATATTCGAGCTTAGTAGCTGTGTAT
GGAATACAAAAAAAAACAAAGGCCAACAAGGAAGCAAATTTTCTTTCCGT
GACATCCTTTCTCGAGTGTACAGTCTGGAGCGCTGCGAGCCTTATGTTGT
CAGCCCGACACGGAAATCTAATGCTGAGTTTTGAATATGAAACGCACTTT
GAAACGCTCCTTGGCAGG back to topprotein sequence of rna1446 >rna1446-protein ID=rna1446-protein|Name=rna1446|organism=Nannochloropsis gaditana|type=polypeptide|length=320bp
MRAGKDQKVSPRVFMCVRIPSASLGGAHCVAAPPAASVRATGVKKPKKPP
VVGGKRAFKFFFHDTYCAQRFVHRFEHRTHTMATKEFLETYQKKIMELRS
VMPARIAEVEAVLQAAPFGKSVSEVMTHSRAAVAANAEVSGSLGTARDVL
LRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGL
DELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQT
EEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKN
FTLLNAPRGDKGDSSHLSMF back to topmRNA from alignment at CM002457.1:651703..653352+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1446 ID=rna1446|Name=rna1446|organism=Nannochloropsis gaditana|type=mRNA|length=1650bp|location=Sequence derived from alignment at CM002457.1:651703..653352+ (Nannochloropsis gaditana)
CATTAGTACCCCCACAAAGCGTCGTGGCTGAGCCGAGACAGTCAGGAGAG
GCCGTCGCAGCATAGTGTTGAGGTGAGTAAGATCGACGGGTCGCCCCACA
GGTTGAGACGGGCAGACAGGATAGGAAGCGATTTCGTCTCCGGGGGCCTG
AACCCTGTACTCGTTTGCCAAAAAATGCGTGCCGGTAAAGACCAAAAAGT
GAGTCCACGCGTATTCATGTGTGTGCGAATTCCGAGTGCGTCTCTCGGCG
GCGCCCATTGTGtggccgcccctcccgccgcaaGTGTACGTGCCACGGGG
GTGAAGAAGCCGAAGAAGCCGCCCGTCGTTGGGGGGAAACGGGCTTTTAA
ATTTTTTTTTCACGATACTTATTGCGCACAAAGGTTTGTACACAGGTTCG
AGCACCGCACACATACTATGGCAACCAAGGAATTTCTCGAAACGTATCAG
GTATGTCcacaggaaaggggggggcagtctccccttcttttcctcgacTA
CGTGCCAACGTTGTGTGCGAGTTTTTGGTAGCCCTTTGCGTACCATTATC
AGCCAGCACGCCATTTAGTTAATTGTTCGTTCAACATAATGAAATTTAAT
GTATTCGCCCCTCATTGACCTCGACATTGTGTCGCGTGTTCTTTTTGTCC
TGGGGCCTCTCGAAGACTTTCTTTCTGATGAAGTGCCACCactccatctc
catcctaACCAATACTCACGTCTTCTGTTCGTGGCTGTAGAAAAAAATCA
TGGAGTTGCGCAGCGTGATGCCTGCACGCAtcgccgaggtggaggccgtg
ctcCAGGCAGCGCCCTTCGGGAAGAGCGTTTCTGAGGTTATGACGCACTC
TCGGGCTGCGGTGGCCGCCAACGCCGAGGTGTCCGGGTCTTTGGGCACAG
CGCGTGATGTGCTCCTCCGCACTGTGGAAGACTTGCATCTAGTGTGCACG
TGGCTTAAGCTTAAAGTGCCCAAAGTCAGTGACGGGGGCAATTTCGGGGT
GGCTGTGATactggaggtggtgaagacgATTGAGGGCAAGATAGAGGTCT
TGAACAAGGGGCTGGACGAGCTCCCGAACTACTTCTCAGAGCGAGCGAGC
GCTGTGGAAAAGTTGGTGGCGCGCACATCGACGGACGTCAAAGAaagcaa
gagcaagagcagcaCCACGGGCGGCAAGGACGGAGACGAGACGAAGGGTA
GCGAGTCCCAGACAGAGGAGAAGTCCGTCAAGAAGAGCGAGTTCCTTCCT
GACCAGCTTGAGCATTTGGTGGCGCTGGATGCTAAATTCTTCACTATCTT
CAAGCGAGATGTCGAGCTGTGCCACTCGGCCTACCTGACGTGCTTCGACA
TCCTCGAGAAGAATTTTACGCTCTTGAACGCACCTCGCGGGGACAAGGGC
GACTCGTCGCATCTATCCATGTTCTAAGGGATGACAACGTTGTAGCAGAA
CGCCCTCGAgtcgtcgccgtcctctGAAGGTGATGCTGAGAAGATGGCGA
ACGCATGCCGTGGCGGGTGctcgggagagggaaagatgggAGAGAGTCCA
TAGGGACGCTTCACTGAGAGTCTTCTGGAAAGAAGAATATCTCTGCCTTC
GTGCAAGAAGGCCGCATTCTTCCTCGTTATACAATTGGAGTTTCGTGGCA
back to topCoding sequence (CDS) from alignment at CM002457.1:651703..653352+ >rna1446 ID=rna1446|Name=rna1446|organism=Nannochloropsis gaditana|type=CDS|length=1926bp|location=Sequence derived from alignment at CM002457.1:651703..653352+ (Nannochloropsis gaditana)
ATGCGTGCCGGTAAAGACCAAAAAGTGAGTCCACGCGTATTCATGTGTGT
GCGAATTCCGAGTGCGTCTCTCGGCGGCGCCCATTGTGtggccgcccctc
ccgccgcaaGTGTACGTGCCACGGGGGTGAAGAAGCCGAAGAAGCCGCCC
GTCGTTGGGGGGAAACGGGCTTTTAAATTTTTTTTTCACGATACTTATTG
CGCACAAAGGTTTGTACACAGGTTCGAGCACCGCACACATACTATGGCAA
CCAAGGAATTTCTCGAAACGTATCAGAAAAAAATCATGGAGTTGCGCAGC
GTGATGCCTGCACGCAtcgccgaggtggaggccgtgctcCAGGCAGCGCC
CTTCGGGAAGAGCGTTTCTGAGGTTATGACGCACTCTCGGGCTGCGGTGG
CCGCCAACGCCGAGGTGTCCGGGTCTTTGGGCACAGCGCGTGATGTGCTC
CTCCGCACTGTGGAAGACTTGCATCTAGTGTGCACGTGGCTTAAGCTTAA
AGTGCCCAAAGTCAGTGACGGGGGCAATTTCGGGGTGGCTGTGATactgg
aggtggtgaagacgATTGAGGGCAAGATAGAGGTCTTGAACAAGGGGCTG
GACGAGCTCCCGAACTACTTCTCAGAGCGAGCGAGCGCTGTGGAAAAGTT
GGTGGCGCGCACATCGACGGACGTCAAAGAaagcaagagcaagagcagca
CCACGGGCGGCAAGGACGGAGACGAGACGAAGGGTAGCGAGTCCCAGACA
GAGGAGAAGTCCGTCAAGAAGAGCGAGTTCCTTCCTGACCAGCTTGAGCA
TTTGGTGGCGCTGGATGCTAAATTCTTCACTATCTTCAAGCGAGATGTCG
AGCTGTGCCACTCGGCCTACCTGACGTGCTTCGACATCCTCGAGAAGAAT
TTTACGCTCTTGAACGCACCTCGCGGGGACAAGGGCGACTCGTCGCATCT
ATCCATGTTCTAAATGCGTGCCGGTAAAGACCAAAAAGTGAGTCCACGCG
TATTCATGTGTGTGCGAATTCCGAGTGCGTCTCTCGGCGGCGCCCATTGT
GtggccgcccctcccgccgcaaGTGTACGTGCCACGGGGGTGAAGAAGCC
GAAGAAGCCGCCCGTCGTTGGGGGGAAACGGGCTTTTAAATTTTTTTTTC
ACGATACTTATTGCGCACAAAGGTTTGTACACAGGTTCGAGCACCGCACA
CATACTATGGCAACCAAGGAATTTCTCGAAACGTATCAGAAAAAAATCAT
GGAGTTGCGCAGCGTGATGCCTGCACGCAtcgccgaggtggaggccgtgc
tcCAGGCAGCGCCCTTCGGGAAGAGCGTTTCTGAGGTTATGACGCACTCT
CGGGCTGCGGTGGCCGCCAACGCCGAGGTGTCCGGGTCTTTGGGCACAGC
GCGTGATGTGCTCCTCCGCACTGTGGAAGACTTGCATCTAGTGTGCACGT
GGCTTAAGCTTAAAGTGCCCAAAGTCAGTGACGGGGGCAATTTCGGGGTG
GCTGTGATactggaggtggtgaagacgATTGAGGGCAAGATAGAGGTCTT
GAACAAGGGGCTGGACGAGCTCCCGAACTACTTCTCAGAGCGAGCGAGCG
CTGTGGAAAAGTTGGTGGCGCGCACATCGACGGACGTCAAAGAaagcaag
agcaagagcagcaCCACGGGCGGCAAGGACGGAGACGAGACGAAGGGTAG
CGAGTCCCAGACAGAGGAGAAGTCCGTCAAGAAGAGCGAGTTCCTTCCTG
ACCAGCTTGAGCATTTGGTGGCGCTGGATGCTAAATTCTTCACTATCTTC
AAGCGAGATGTCGAGCTGTGCCACTCGGCCTACCTGACGTGCTTCGACAT
CCTCGAGAAGAATTTTACGCTCTTGAACGCACCTCGCGGGGACAAGGGCG
ACTCGTCGCATCTATCCATGTTCTAA back to top
|