EWM29228.1, cds1443 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29228.1 vs. NCBI_GenBank
Match: gi|585111749|gb|EWM29228.1| (proteasome activator subunit 1 [Nannochloropsis gaditana]) HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0 Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0
Query: 1 MRAGKDQKVSPRVFMCVRIPSASLGGAHCVAAPPAASVRATGVKKPKKPPVVGGKRAFKFFFHDTYCAQRFVHRFEHRTHTMATKEFLETYQKKIMELRSVMPARIAEVEAVLQAAPFGKSVSEVMTHSRAAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKGDSSHLSMF 320
MRAGKDQKVSPRVFMCVRIPSASLGGAHCVAAPPAASVRATGVKKPKKPPVVGGKRAFKFFFHDTYCAQRFVHRFEHRTHTMATKEFLETYQKKIMELRSVMPARIAEVEAVLQAAPFGKSVSEVMTHSRAAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKGDSSHLSMF
Sbjct: 1 MRAGKDQKVSPRVFMCVRIPSASLGGAHCVAAPPAASVRATGVKKPKKPPVVGGKRAFKFFFHDTYCAQRFVHRFEHRTHTMATKEFLETYQKKIMELRSVMPARIAEVEAVLQAAPFGKSVSEVMTHSRAAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKGDSSHLSMF 320
BLAST of EWM29228.1 vs. NCBI_GenBank
Match: gi|298714077|emb|CBJ33840.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 109.383 bits (272), Expect = 1.057e-24 Identity = 74/215 (34.42%), Postives = 118/215 (54.88%), Query Frame = 0
Query: 102 MPARIAEVEAVLQA-------APFGKSVSEVMTHSRAAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRG 309
+P ++ +++A+L+A A +++T S + NA + L T R+ + +T+ L + W++++VPK+ DG NFGV+V L+V K I+ + L E+P YF RASA +K+ + S + K S S S TGGKDGD +K SES + E+ +S F PD HL+ALD K+F + + + D++EKN L P+G
Sbjct: 19 LPEQVGKMQALLEAEFAYTSLADIESGFKQLLTSSGGSATENANMGALLSTVRNEVTQTMSILLALKRWIRVQVPKIEDGNNFGVSVQLDVAKGIDELTTPVASSLGEMPGYFESRASAWDKIGNKKSKESKTSSSASKDTGGKDGDSSKTSESTSTEEKTSESSFAPDSANHLIALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKG 233
BLAST of EWM29228.1 vs. NCBI_GenBank
Match: gi|301127650|ref|XP_002909937.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097823|gb|EEY55875.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 107.457 bits (267), Expect = 7.042e-24 Identity = 72/230 (31.30%), Postives = 124/230 (53.91%), Query Frame = 0
Query: 98 LRSVMPARIAEVEAVLQAAPFGKSVSEVMTH-------SRAAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKGDSSHLSMF 320
L S +P R+A+V+A+L+ ++ S++ T + AAV++N EV L D + + + + + W++++VPKV DG NFGV V ++ +E K D + +Y S RA+AVEKL A+ S++ + + +S+ GGKDGDE K ++ E++S ++ D + +V +D K++ R +E Y D++ KN + PRG K D + +MF
Sbjct: 15 LLSELPQRVAQVQALLEQHAGERTPSKLRTKFAQAVLAAPAAVSSNGEVQALLTVVGDEVAQLISTIQQLQVWIQVQVPKVEDGNNFGVEVQKYAFVHLKEALERWQKTWDSMADYSSARATAVEKLNAKASSETSTTTTVTSSKGGKDGDEEKSVTAKVEKQSNAGTKAPEDAIAAVVEIDIKWYFNLARALEGVRDQYAVTEDVISKNKEKIELPRG-KNDRAGFNMF 243
BLAST of EWM29228.1 vs. NCBI_GenBank
Match: gi|301123717|ref|XP_002909585.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262100347|gb|EEY58399.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 105.916 bits (263), Expect = 2.491e-23 Identity = 72/230 (31.30%), Postives = 124/230 (53.91%), Query Frame = 0
Query: 98 LRSVMPARIAEVEAVLQAAPFGKSVSEVMTH-------SRAAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKGDSSHLSMF 320
L S +P R+A+V+A+L+ ++ S++ T + AAV++N EV L D + + + + + W++++VPKV DG NFGV V ++ +E K D + +Y S RA+AVEKL A+ S++ + + +S+ GGKDGDE K ++ E++S ++ D + +V +D K++ R +E Y D++ KN + PRG K D + +MF
Sbjct: 15 LLSELPQRVAQVQALLEQHAGERTPSKLRTKFAQAVLAAPAAVSSNGEVQALLTVVGDEVAQLISTIQQLQVWIQVQVPKVEDGNNFGVEVQKYAFVHLKEALERWQKTWDSMADYSSARATAVEKLNAKASSETSTTTTVTSSKGGKDGDEEKSVTAKVEKQSNAGTKAPEDAIAAVVEIDIKWYFNLARALEGVRDQYAVTEDVIFKNKEKIELPRG-KNDRAGFNMF 243
BLAST of EWM29228.1 vs. NCBI_GenBank
Match: gi|673016884|ref|XP_008862403.1| (hypothetical protein H310_01142 [Aphanomyces invadans] >gi|574481606|gb|ETW08598.1| hypothetical protein H310_01142 [Aphanomyces invadans]) HSP 1 Score: 104.375 bits (259), Expect = 8.748e-23 Identity = 64/214 (29.91%), Postives = 108/214 (50.47%), Query Frame = 0
Query: 100 SVMPARIAEVEAVLQAAPFGKSVSEVMTHSRAAVAANAEVSGSLGTARDVLLR----TVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRG 309
+ +P R+ V +L + + S++ V+ANA + LG ++L + +L + W++L P+V+DG NFGV V V I L K D + +Y+ +RA+A EK + S + K+S S+S GG DG K S++++E++ +PD L ++VA+D K++ +R +E Y D +EKN + PRG
Sbjct: 17 ATIPQRMVRVSTLLASEFPVTTPSQLTEMFTPLVSANASSNPHLGRLVTLVLDEIHIAIHELQRLERWIQLLTPRVADGNNFGVEVQKSVQLQISASRTALQKSWDAMTDYYWQRATAYEKFAVKVSKEHKKSSSQSKEEGGNDGAVDKKSQAESEDEITSAPSVIPDLLVYVVAVDVKWYFNLQRTLESIGDHYAFTLDAVEKNSAKIKLPRG 230
BLAST of EWM29228.1 vs. NCBI_GenBank
Match: gi|695370770|ref|XP_009514393.1| (hypothetical protein PHYSODRAFT_553779 [Phytophthora sojae] >gi|348687304|gb|EGZ27118.1| hypothetical protein PHYSODRAFT_553779 [Phytophthora sojae]) HSP 1 Score: 103.605 bits (257), Expect = 1.473e-22 Identity = 80/247 (32.39%), Postives = 123/247 (49.80%), Query Frame = 0
Query: 88 LETYQKKIME----LRSVMPARIAEVEAVLQAAPFGKSVSEVMTHSRAAVAANAEVSGSLGTARDVL----------LRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKGDSSHLSMF 320
++ Y+K + L S +P R+A V+A++Q +S S V AV A GS G + +L L + L L W++L+VPKV DG NFGV V ++ ++ K D L +Y S RASAVEKL A+ +++ + + +S+ GGKDGDE K ++ E++S S D + +V LD K++ R +E Y D++ KN + PRG K D + +MF
Sbjct: 1 MDEYKKSVTAAGAALLSELPQRVAHVQALVQQHAAERSPSAVRAKFAQAVLAAPSAVGSNGGVQSLLAVVGDEVAKLLSAIAQLQL---WIQLQVPKVEDGNNFGVEVQKYAYVQLKEALDKWQKTWDALADYSSARASAVEKLNAKATSETSTTTTVTSSKGGKDGDEEKSVTAKVEKQSNNGSNAAEDAVAAVVELDVKWYFNLVRALEGVRDQYAVTADVIAKNQEKIELPRG-KNDRAGFNMF 243
BLAST of EWM29228.1 vs. NCBI_GenBank
Match: gi|325186724|emb|CCA21271.1| (conserved hypothetical protein [Albugo laibachii Nc14] >gi|325187104|emb|CCA21645.1| conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 99.7525 bits (247), Expect = 3.769e-21 Identity = 69/243 (28.40%), Postives = 119/243 (48.97%), Query Frame = 0
Query: 85 KEFLETYQKKIMELRSVMPARIAEVEAVLQAAPFGKSVSEVMTHSR------AAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDET-KGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKGDSSHLSMF 320
+E++E+ +K+ L + +P R+ +E ++ ++ S + + + N V ++ T D L +E + W+ L VPK++DG NFGV V V + I K D LP Y ++RA AVEK+ + + + ++ + SS+ G KDG E K S S T+E + +PD L ++ LD K++ R ++ Y FD+ +KN + PRG + S+ SM+
Sbjct: 2 EEYIESVEKQSKILLAELPKRVDALEKTIKTLKVDRTASVQLEEFKKEFDCASPWKLNERVQNAMHTVTDELCSAIEITQQLAHWVHLSVPKIADGNNFGVEVQKSVHAHLRESINNFQKAWDTLPEYANQRALAVEKIKGKDTEERTKTSTVSSSEGKKDGSENIKESTSITKEIHTSGDQ-VPDWLAYIATLDLKWYYNHLRILDGIRCHYALTFDVTKKNMDKILLPRG--AEVSNYSMY 241
BLAST of EWM29228.1 vs. NCBI_GenBank
Match: gi|566027920|gb|ETI50831.1| (hypothetical protein F443_05701 [Phytophthora parasitica P1569] >gi|567965239|gb|ETK90712.1| hypothetical protein L915_05563 [Phytophthora parasitica] >gi|567993954|gb|ETL44120.1| hypothetical protein L916_05505 [Phytophthora parasitica] >gi|568023230|gb|ETL97292.1| hypothetical protein L917_05391 [Phytophthora parasitica] >gi|568053620|gb|ETM50442.1| hypothetical protein L914_05514 [Phytophthora parasitica] >gi|570331612|gb|ETO79560.1| hypothetical protein F444_05753 [Phytophthora parasitica P1976] >gi|570955412|gb|ETP20571.1| hypothetical protein F441_05709 [Phytophthora parasitica CJ01A1] >gi|570990614|gb|ETP48530.1| hypothetical protein F442_05748 [Phytophthora parasitica P10297] >gi|970629808|gb|KUF76930.1| Proteasome activator complex subunit 3 [Phytophthora nicotianae] >gi|970662375|gb|KUF99769.1| 13 kDa ribonucleoprotein-associated protein [Phytophthora nicotianae]) HSP 1 Score: 98.9821 bits (245), Expect = 8.576e-21 Identity = 71/226 (31.42%), Postives = 117/226 (51.77%), Query Frame = 0
Query: 102 MPARIAEVEAVLQAAPFGKSVSEVMTH-------SRAAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKGDSSHLSMF 320
+P R+A V+ ++Q +S S++ T + AAV++N EV L D + + + + W++L+VPKV DG NFGV V ++ +E K D +Y S RA+AVEKL A+ S++ + + +S+ GGKDGDE K + E++S ++ D + +V +D K++ R +E Y D++ KN + PRG K D + +MF
Sbjct: 19 LPRRVALVQELVQQHAGERSPSKLRTKFAQAVLAAPAAVSSNGEVQALLTVVGDEVAHLMSAIQQLQVWIQLQVPKVEDGNNFGVEVQKYAFVHLKEALEKWQKTWDSFADYSSVRATAVEKLNAKASSETSTTTTVTSSKGGKDGDEEKSVTATVEKQSNAGTKAPEDAIASVVEIDIKWYFNLVRALEGVRDQYAVTEDVITKNKEKIELPRG-KNDRAGFNMF 243
BLAST of EWM29228.1 vs. NCBI_GenBank
Match: gi|813122788|ref|XP_012196517.1| (hypothetical protein SPRG_02558 [Saprolegnia parasitica CBS 223.65] >gi|641539044|gb|KDO32865.1| hypothetical protein SPRG_02558 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 98.5969 bits (244), Expect = 1.020e-20 Identity = 57/188 (30.32%), Postives = 97/188 (51.60%), Query Frame = 0
Query: 135 ANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPR--GDKGDSSHLSMF 320
+NA + + D + ++ + + W++L VPKV+DG NFGV V V I L K D + +Y+ +RA+A EK A+ +++ + S ++ GGKDGD TK S ++ + + L D + ++ A+D K++ +R +E Y D +EKN + PR G++G +SMF
Sbjct: 56 SNARLVHLIQIVLDEIHTAIQKMQSLERWIQLLVPKVADGNNFGVEVQKSVQLQISASRTALQKAWDGMTDYYWQRATAYEKFAAKHASEKTNTISTTAEVGGKDGDVTKKSTVDADKTTASSATPLADLVSYVAAVDVKWYFNLQRTLESVGDHYAYTLDAVEKNAAKIKLPRGHGERG----MSMF 239
BLAST of EWM29228.1 vs. NCBI_GenBank
Match: gi|953492345|emb|CEG45185.1| (proteasome activator subunit 1 [Plasmopara halstedii]) HSP 1 Score: 99.3673 bits (246), Expect = 1.581e-20 Identity = 66/218 (30.28%), Postives = 114/218 (52.29%), Query Frame = 0
Query: 98 LRSVMPARIAEVEAVLQA-----AP--FGKSVSEVMTHSRAAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPR 308
L S +P R+A V ++Q AP ++++ + A+V++N +V L D + + + + L+ W++L VPKV DG NFGV V ++ +E K D L +Y S RA+AVEKL A+ +++ + + +S+ GGK+GDE K ++ E++S ++ D L +V +D K++ R +E Y D++ KN + PR
Sbjct: 15 LLSELPQRVAHVHTLVQQYASERAPSKLRAKFAQMVLAAPASVSSNGDVQALLAVVGDEVAQLMSSIQLLQVWIQLLVPKVEDGNNFGVEVQKYAYVHLKEALEKWQKTWDSLADYSSARATAVEKLNAKVNSETSTTTTVTSSKGGKEGDEEKSVTAKVEKQSNTGNKAPEDALAAVVEIDIKWYFNLLRALEGVRDQYAVTEDVINKNKEKIELPR 232 The following BLAST results are available for this feature:
BLAST of EWM29228.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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