EWM29228.1, cds1443 (CDS) Nannochloropsis gaditana

Overview
NameEWM29228.1
Unique Namecds1443
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:651877..652152 +
Alignment locationCM002457.1:652443..653129 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29228.1
Productproteasome activator subunit 1
Orig transcript idgnl|cribi|Naga_100203g9.2712.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:651877..652152 +
CM002457.1supercontigCM002457.1:652443..653129 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0008537proteasome activator complex
Vocabulary: INTERPRO
TermDefinition
IPR009077Proteasome_activ_pa28
IPR003186Proteasome_activ_pa28_C
Homology
BLAST of EWM29228.1 vs. NCBI_GenBank
Match: gi|585111749|gb|EWM29228.1| (proteasome activator subunit 1 [Nannochloropsis gaditana])

HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0
Query:    1 MRAGKDQKVSPRVFMCVRIPSASLGGAHCVAAPPAASVRATGVKKPKKPPVVGGKRAFKFFFHDTYCAQRFVHRFEHRTHTMATKEFLETYQKKIMELRSVMPARIAEVEAVLQAAPFGKSVSEVMTHSRAAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKGDSSHLSMF 320
            MRAGKDQKVSPRVFMCVRIPSASLGGAHCVAAPPAASVRATGVKKPKKPPVVGGKRAFKFFFHDTYCAQRFVHRFEHRTHTMATKEFLETYQKKIMELRSVMPARIAEVEAVLQAAPFGKSVSEVMTHSRAAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKGDSSHLSMF
Sbjct:    1 MRAGKDQKVSPRVFMCVRIPSASLGGAHCVAAPPAASVRATGVKKPKKPPVVGGKRAFKFFFHDTYCAQRFVHRFEHRTHTMATKEFLETYQKKIMELRSVMPARIAEVEAVLQAAPFGKSVSEVMTHSRAAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKGDSSHLSMF 320          
BLAST of EWM29228.1 vs. NCBI_GenBank
Match: gi|298714077|emb|CBJ33840.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 109.383 bits (272), Expect = 1.057e-24
Identity = 74/215 (34.42%), Postives = 118/215 (54.88%), Query Frame = 0
Query:  102 MPARIAEVEAVLQA-------APFGKSVSEVMTHSRAAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRG 309
            +P ++ +++A+L+A       A       +++T S  +   NA +   L T R+ + +T+  L  +  W++++VPK+ DG NFGV+V L+V K I+     +   L E+P YF  RASA +K+  + S + K S S S  TGGKDGD +K SES + E+   +S F PD   HL+ALD K+F      +     + +   D++EKN   L  P+G
Sbjct:   19 LPEQVGKMQALLEAEFAYTSLADIESGFKQLLTSSGGSATENANMGALLSTVRNEVTQTMSILLALKRWIRVQVPKIEDGNNFGVSVQLDVAKGIDELTTPVASSLGEMPGYFESRASAWDKIGNKKSKESKTSSSASKDTGGKDGDSSKTSESTSTEEKTSESSFAPDSANHLIALDVKWFVSLHHTLLRARDSLVLAADMIEKNMEKLLRPKG 233          
BLAST of EWM29228.1 vs. NCBI_GenBank
Match: gi|301127650|ref|XP_002909937.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097823|gb|EEY55875.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 107.457 bits (267), Expect = 7.042e-24
Identity = 72/230 (31.30%), Postives = 124/230 (53.91%), Query Frame = 0
Query:   98 LRSVMPARIAEVEAVLQAAPFGKSVSEVMTH-------SRAAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKGDSSHLSMF 320
            L S +P R+A+V+A+L+     ++ S++ T        + AAV++N EV   L    D + + +  +  +  W++++VPKV DG NFGV V       ++  +E   K  D + +Y S RA+AVEKL A+ S++   + + +S+ GGKDGDE K   ++ E++S   ++   D +  +V +D K++    R +E     Y    D++ KN   +  PRG K D +  +MF
Sbjct:   15 LLSELPQRVAQVQALLEQHAGERTPSKLRTKFAQAVLAAPAAVSSNGEVQALLTVVGDEVAQLISTIQQLQVWIQVQVPKVEDGNNFGVEVQKYAFVHLKEALERWQKTWDSMADYSSARATAVEKLNAKASSETSTTTTVTSSKGGKDGDEEKSVTAKVEKQSNAGTKAPEDAIAAVVEIDIKWYFNLARALEGVRDQYAVTEDVISKNKEKIELPRG-KNDRAGFNMF 243          
BLAST of EWM29228.1 vs. NCBI_GenBank
Match: gi|301123717|ref|XP_002909585.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262100347|gb|EEY58399.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 105.916 bits (263), Expect = 2.491e-23
Identity = 72/230 (31.30%), Postives = 124/230 (53.91%), Query Frame = 0
Query:   98 LRSVMPARIAEVEAVLQAAPFGKSVSEVMTH-------SRAAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKGDSSHLSMF 320
            L S +P R+A+V+A+L+     ++ S++ T        + AAV++N EV   L    D + + +  +  +  W++++VPKV DG NFGV V       ++  +E   K  D + +Y S RA+AVEKL A+ S++   + + +S+ GGKDGDE K   ++ E++S   ++   D +  +V +D K++    R +E     Y    D++ KN   +  PRG K D +  +MF
Sbjct:   15 LLSELPQRVAQVQALLEQHAGERTPSKLRTKFAQAVLAAPAAVSSNGEVQALLTVVGDEVAQLISTIQQLQVWIQVQVPKVEDGNNFGVEVQKYAFVHLKEALERWQKTWDSMADYSSARATAVEKLNAKASSETSTTTTVTSSKGGKDGDEEKSVTAKVEKQSNAGTKAPEDAIAAVVEIDIKWYFNLARALEGVRDQYAVTEDVIFKNKEKIELPRG-KNDRAGFNMF 243          
BLAST of EWM29228.1 vs. NCBI_GenBank
Match: gi|673016884|ref|XP_008862403.1| (hypothetical protein H310_01142 [Aphanomyces invadans] >gi|574481606|gb|ETW08598.1| hypothetical protein H310_01142 [Aphanomyces invadans])

HSP 1 Score: 104.375 bits (259), Expect = 8.748e-23
Identity = 64/214 (29.91%), Postives = 108/214 (50.47%), Query Frame = 0
Query:  100 SVMPARIAEVEAVLQAAPFGKSVSEVMTHSRAAVAANAEVSGSLGTARDVLLR----TVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRG 309
            + +P R+  V  +L +     + S++       V+ANA  +  LG    ++L      + +L  +  W++L  P+V+DG NFGV V   V   I      L K  D + +Y+ +RA+A EK   + S + K+S S+S   GG DG   K S++++E++       +PD L ++VA+D K++   +R +E     Y    D +EKN   +  PRG
Sbjct:   17 ATIPQRMVRVSTLLASEFPVTTPSQLTEMFTPLVSANASSNPHLGRLVTLVLDEIHIAIHELQRLERWIQLLTPRVADGNNFGVEVQKSVQLQISASRTALQKSWDAMTDYYWQRATAYEKFAVKVSKEHKKSSSQSKEEGGNDGAVDKKSQAESEDEITSAPSVIPDLLVYVVAVDVKWYFNLQRTLESIGDHYAFTLDAVEKNSAKIKLPRG 230          
BLAST of EWM29228.1 vs. NCBI_GenBank
Match: gi|695370770|ref|XP_009514393.1| (hypothetical protein PHYSODRAFT_553779 [Phytophthora sojae] >gi|348687304|gb|EGZ27118.1| hypothetical protein PHYSODRAFT_553779 [Phytophthora sojae])

HSP 1 Score: 103.605 bits (257), Expect = 1.473e-22
Identity = 80/247 (32.39%), Postives = 123/247 (49.80%), Query Frame = 0
Query:   88 LETYQKKIME----LRSVMPARIAEVEAVLQAAPFGKSVSEVMTHSRAAVAANAEVSGSLGTARDVL----------LRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKGDSSHLSMF 320
            ++ Y+K +      L S +P R+A V+A++Q     +S S V      AV A     GS G  + +L          L  +  L L   W++L+VPKV DG NFGV V       ++  ++   K  D L +Y S RASAVEKL A+ +++   + + +S+ GGKDGDE K   ++ E++S   S    D +  +V LD K++    R +E     Y    D++ KN   +  PRG K D +  +MF
Sbjct:    1 MDEYKKSVTAAGAALLSELPQRVAHVQALVQQHAAERSPSAVRAKFAQAVLAAPSAVGSNGGVQSLLAVVGDEVAKLLSAIAQLQL---WIQLQVPKVEDGNNFGVEVQKYAYVQLKEALDKWQKTWDALADYSSARASAVEKLNAKATSETSTTTTVTSSKGGKDGDEEKSVTAKVEKQSNNGSNAAEDAVAAVVELDVKWYFNLVRALEGVRDQYAVTADVIAKNQEKIELPRG-KNDRAGFNMF 243          
BLAST of EWM29228.1 vs. NCBI_GenBank
Match: gi|325186724|emb|CCA21271.1| (conserved hypothetical protein [Albugo laibachii Nc14] >gi|325187104|emb|CCA21645.1| conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 99.7525 bits (247), Expect = 3.769e-21
Identity = 69/243 (28.40%), Postives = 119/243 (48.97%), Query Frame = 0
Query:   85 KEFLETYQKKIMELRSVMPARIAEVEAVLQAAPFGKSVSEVMTHSR------AAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDET-KGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKGDSSHLSMF 320
            +E++E+ +K+   L + +P R+  +E  ++     ++ S  +   +      +    N  V  ++ T  D L   +E    +  W+ L VPK++DG NFGV V   V   +   I    K  D LP Y ++RA AVEK+  + + +  ++ + SS+ G KDG E  K S S T+E      + +PD L ++  LD K++    R ++     Y   FD+ +KN   +  PRG   + S+ SM+
Sbjct:    2 EEYIESVEKQSKILLAELPKRVDALEKTIKTLKVDRTASVQLEEFKKEFDCASPWKLNERVQNAMHTVTDELCSAIEITQQLAHWVHLSVPKIADGNNFGVEVQKSVHAHLRESINNFQKAWDTLPEYANQRALAVEKIKGKDTEERTKTSTVSSSEGKKDGSENIKESTSITKEIHTSGDQ-VPDWLAYIATLDLKWYYNHLRILDGIRCHYALTFDVTKKNMDKILLPRG--AEVSNYSMY 241          
BLAST of EWM29228.1 vs. NCBI_GenBank
Match: gi|566027920|gb|ETI50831.1| (hypothetical protein F443_05701 [Phytophthora parasitica P1569] >gi|567965239|gb|ETK90712.1| hypothetical protein L915_05563 [Phytophthora parasitica] >gi|567993954|gb|ETL44120.1| hypothetical protein L916_05505 [Phytophthora parasitica] >gi|568023230|gb|ETL97292.1| hypothetical protein L917_05391 [Phytophthora parasitica] >gi|568053620|gb|ETM50442.1| hypothetical protein L914_05514 [Phytophthora parasitica] >gi|570331612|gb|ETO79560.1| hypothetical protein F444_05753 [Phytophthora parasitica P1976] >gi|570955412|gb|ETP20571.1| hypothetical protein F441_05709 [Phytophthora parasitica CJ01A1] >gi|570990614|gb|ETP48530.1| hypothetical protein F442_05748 [Phytophthora parasitica P10297] >gi|970629808|gb|KUF76930.1| Proteasome activator complex subunit 3 [Phytophthora nicotianae] >gi|970662375|gb|KUF99769.1| 13 kDa ribonucleoprotein-associated protein [Phytophthora nicotianae])

HSP 1 Score: 98.9821 bits (245), Expect = 8.576e-21
Identity = 71/226 (31.42%), Postives = 117/226 (51.77%), Query Frame = 0
Query:  102 MPARIAEVEAVLQAAPFGKSVSEVMTH-------SRAAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKGDSSHLSMF 320
            +P R+A V+ ++Q     +S S++ T        + AAV++N EV   L    D +   +  +  +  W++L+VPKV DG NFGV V       ++  +E   K  D   +Y S RA+AVEKL A+ S++   + + +S+ GGKDGDE K   +  E++S   ++   D +  +V +D K++    R +E     Y    D++ KN   +  PRG K D +  +MF
Sbjct:   19 LPRRVALVQELVQQHAGERSPSKLRTKFAQAVLAAPAAVSSNGEVQALLTVVGDEVAHLMSAIQQLQVWIQLQVPKVEDGNNFGVEVQKYAFVHLKEALEKWQKTWDSFADYSSVRATAVEKLNAKASSETSTTTTVTSSKGGKDGDEEKSVTATVEKQSNAGTKAPEDAIASVVEIDIKWYFNLVRALEGVRDQYAVTEDVITKNKEKIELPRG-KNDRAGFNMF 243          
BLAST of EWM29228.1 vs. NCBI_GenBank
Match: gi|813122788|ref|XP_012196517.1| (hypothetical protein SPRG_02558 [Saprolegnia parasitica CBS 223.65] >gi|641539044|gb|KDO32865.1| hypothetical protein SPRG_02558 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 98.5969 bits (244), Expect = 1.020e-20
Identity = 57/188 (30.32%), Postives = 97/188 (51.60%), Query Frame = 0
Query:  135 ANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPR--GDKGDSSHLSMF 320
            +NA +   +    D +   ++ +  +  W++L VPKV+DG NFGV V   V   I      L K  D + +Y+ +RA+A EK  A+ +++   + S ++  GGKDGD TK S    ++ +   +  L D + ++ A+D K++   +R +E     Y    D +EKN   +  PR  G++G    +SMF
Sbjct:   56 SNARLVHLIQIVLDEIHTAIQKMQSLERWIQLLVPKVADGNNFGVEVQKSVQLQISASRTALQKAWDGMTDYYWQRATAYEKFAAKHASEKTNTISTTAEVGGKDGDVTKKSTVDADKTTASSATPLADLVSYVAAVDVKWYFNLQRTLESVGDHYAYTLDAVEKNAAKIKLPRGHGERG----MSMF 239          
BLAST of EWM29228.1 vs. NCBI_GenBank
Match: gi|953492345|emb|CEG45185.1| (proteasome activator subunit 1 [Plasmopara halstedii])

HSP 1 Score: 99.3673 bits (246), Expect = 1.581e-20
Identity = 66/218 (30.28%), Postives = 114/218 (52.29%), Query Frame = 0
Query:   98 LRSVMPARIAEVEAVLQA-----AP--FGKSVSEVMTHSRAAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPR 308
            L S +P R+A V  ++Q      AP       ++++  + A+V++N +V   L    D + + +  + L+  W++L VPKV DG NFGV V       ++  +E   K  D L +Y S RA+AVEKL A+ +++   + + +S+ GGK+GDE K   ++ E++S   ++   D L  +V +D K++    R +E     Y    D++ KN   +  PR
Sbjct:   15 LLSELPQRVAHVHTLVQQYASERAPSKLRAKFAQMVLAAPASVSSNGDVQALLAVVGDEVAQLMSSIQLLQVWIQLLVPKVEDGNNFGVEVQKYAYVHLKEALEKWQKTWDSLADYSSARATAVEKLNAKVNSETSTTTTVTSSKGGKEGDEEKSVTAKVEKQSNTGNKAPEDALAAVVEIDIKWYFNLLRALEGVRDQYAVTEDVINKNKEKIELPR 232          
The following BLAST results are available for this feature:
BLAST of EWM29228.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111749|gb|EWM29228.1|0.000e+0100.00proteasome activator subunit 1 [Nannochloropsis ga... [more]
gi|298714077|emb|CBJ33840.1|1.057e-2434.42conserved unknown protein [Ectocarpus siliculosus][more]
gi|301127650|ref|XP_002909937.1|7.042e-2431.30conserved hypothetical protein [Phytophthora infes... [more]
gi|301123717|ref|XP_002909585.1|2.491e-2331.30conserved hypothetical protein [Phytophthora infes... [more]
gi|673016884|ref|XP_008862403.1|8.748e-2329.91hypothetical protein H310_01142 [Aphanomyces invad... [more]
gi|695370770|ref|XP_009514393.1|1.473e-2232.39hypothetical protein PHYSODRAFT_553779 [Phytophtho... [more]
gi|325186724|emb|CCA21271.1|3.769e-2128.40conserved hypothetical protein [Albugo laibachii N... [more]
gi|566027920|gb|ETI50831.1|8.576e-2131.42hypothetical protein F443_05701 [Phytophthora para... [more]
gi|813122788|ref|XP_012196517.1|1.020e-2030.32hypothetical protein SPRG_02558 [Saprolegnia paras... [more]
gi|953492345|emb|CEG45185.1|1.581e-2030.28proteasome activator subunit 1 [Plasmopara halsted... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1446rna1446Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications