rna1442, rna1442 (mRNA) Nannochloropsis gaditana

Overview
Namerna1442
Unique Namerna1442
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2276
Alignment locationCM002457.1:643745..645355 +

Link to JBrowse

Properties
Property NameValue
Productphotosystem ii oxygen evolving complex protein
Orig transcript idgnl|cribi|Naga_100119g18.8007.mrna
Orig protein idgnl|cribi|Naga_100119g18.8007
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:643745..645355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100119g18gene1392Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1442rna1442-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29249.1cds1439Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1442 ID=rna1442|Name=rna1442|organism=Nannochloropsis gaditana|type=mRNA|length=2276bp
GAACGTAAACATGCCCGAGACGGCGATGCCGCACAAGCGAAAAAAAGCGT
GATGTCTGAGCGCGGCGGCTATCAAGGGATCTCGACAAATCTCTGCCTTC
GGCTCGATTTCGTCAGGTCAAATTTGTCCCAGCGGCTAGCGTAAAAAACA
TCTCCTCGACATGCTGAAGACAACTTTATGCAGCCCTAGACAAAGAGTGT
CGCCCAGATTAGGTTTCTCGGCACTATTCTCAAGAGAGGGCATAGGTGGA
CGAGCTCCATCCCGCTTGCCGCGCTCGGCCAGCTTCTTCGCTAATTTGAC
TCGATCCCATGTTGGGGGGAAATGCACACGGCGTTCACGACGTAGGAGTC
ACACACGGCGTTCCGTGGCGCTTCAGCTTGTGCAATCAATTGGGCACGGT
TGCCTGTTTGCGCTTGTTCCTGGCATCTTATCATCTGCTCAACCTCTCAA
GCAATACAAACACGTGCATATACAGAGAGGAAAGCAATCGCGCCAGCACA
TGTCCTGATCGACGGCTAGAAGAGGCCTTGTGGCAAGGCCTGTGACCTAG
GGAAAAAACGCGTGCAACAGAGCGGGTTCAGGTAGGAGTGACCTCTGGCA
TCATGCCCCAACGGCAAACGACGGTGCACCTGCATGTGCTTCAGCCAGCT
AAGGCCTGGATGCGGCGGCGGGTAGGAATAATGGCGTACACGGCGCTTTT
GCTCGTGGCTGTCGCTCTCATTGCTCGACACGACGGATGGTCGGGCAAGA
GAAGCAGTAGCAGAAGCCGAGCTGCTTCGAAGGCACGGGCCCTAGCCTCC
CCAAAGAGGCATTATGAGTCCTCGCGCGAGCACGCACCAGCCAGATCAAG
ACTACGAAGCGTCACACAAGCATATAGAGTGGCGGCAGACTCCTCCCAGC
TGCCACCACACCGAGTGTTACCATTGCCTTGCGACTGTCAGCACTGTGAG
GTGCGCCAGTCATACTCCACGTCCCCGCCAATGCCCACGCTTCCATTCCC
AACGGGCACTGCCCCCGCACGCGAGAGCGGCATATTCCATCATGATCCTT
TTCCGAGCAGCACGAGAGAAGACATGCTGGCCCCAGAACCTGCGGCCTGG
CTGGGTGTTGGCCGACCTCCTCACCGGGTTGGAGAATACCACGTGCGCGT
CATCATCCGGGTCCACCACCTGCAAGAGGCAGCCACCCATTCGCTCATAT
GGGCCATGCGTGCTCAGCCCCAGGCCGCTCAGAGCCAGCCGGGTTCCCCT
GAATTCACGGTGGACTTCGCCCTGGTGGCCACGGAAGAGCAGGGGCTGCC
CGTGGTGCATCGGATTGCAGAGGCGGAGTGGCGCCGCGTCCGGGACATTG
ACCCCCTCAGGAGCAGCGACTCTCTCTCGGTCTCACCTCCCGCCCCCGAC
GTCTTTGTAGCGGACACCACAGGCTCCTTCTATGCCCTGGCCTCGAACCG
CTCTGCGCCCTATCGGTGCAGTGCCGCGGACGAGGCTGAATACTACTCCA
AGGGTGGCGACTACTACGTGCGTCTACACTGCGACTATGATAACCACGCT
TACTACCAAGCCACCGACGTGGGGATGCTGGATGTCTTGCGAGGCTGCGC
CTGGTGCACACACGTTCTCGTGACCAATTCGGACAACAGCTACCACCCCG
ACTTCCTCCTGCACGCACTCTCACCTCAAGCGGACCTGGTTACGACAGAT
TTTATCGATCACGGGGAGCGCGTGGTGGTCGCGGACTGGCGATGGGGCGA
GGTCGACCTCGGCGGGGTCCTGGCCTCCAAGGCCGTCGTCATGAAGACAG
GGGGGTTCATCGCGTCGTTACCCCCCGACGCAGGCCCACAAGAAACTCAC
GACAACGACTATTGGTTTGTCCACCGAGGGTTAGAATTGGGGGCGACGAC
GGCATTGGTGCACAAATTAATGTTTTTCCACAATTGAGGTCGATTAGGAT
AGTACGACGTGCGCGTGGAGAGACGGCCAAAAACATGTTTTGATAAGCGA
CGATCGGATTATCAAATGCTACGAGATGGAAGAGTGGATTTAAATTTTGA
AGAAAATGCTGCAAAAATACATTGCGCGGGGTTCGACGGCATAGCTGCAT
GCATGAACGTGTGTGCATGGCGAGCTCGAAAGAGAAAGAACGAAAGTAGC
TTCTTTGGAACAAGAACATCTGTTGGGCGTGCAGAATATGCGACGCTGAT
CGAGAGTGATGGTGTTTTCACACACCCAGACACAGGCATGAACCAGATGA
GATGAAACGTTCTCTGATCGGCATGA
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protein sequence of rna1442

>rna1442-protein ID=rna1442-protein|Name=rna1442|organism=Nannochloropsis gaditana|type=polypeptide|length=244bp
MLRGLFTVACSLTALGTAAFVPPSRSSFIFPTRQQLQQQQTTGRVMALYA
TNTPSLSTLDRRALLFKSAGSLLGLVGLSLARPAEAVEEVPLVRDKQGGL
LEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPV
KASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFKGEA
VSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL
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mRNA from alignment at CM002457.1:643745..645355+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1442 ID=rna1442|Name=rna1442|organism=Nannochloropsis gaditana|type=mRNA|length=1611bp|location=Sequence derived from alignment at CM002457.1:643745..645355+ (Nannochloropsis gaditana)
TAATCTGGGCGACACTCTTTGTCTAGGGCTGCATAAAGTTGTCTTCAGCA
TGTCGAGGAGATGTTTTTTACGCTAGCCGCTGGGACAAATTTGACCTGAC
GAAATCGAGCCGAAGGCAGAGATTTGTCGAGATCCCTTGATAGCCGCCGC
GCTCAGACATCACGCTTTTTTTCGCTTGTGCGGCATCGCCGTCTCGGGCA
TGTTTACGTTCATTGGCTCATCTGTTTAATGCAACCGTGCTACTCCAAGG
ATTACGTGACAGCTTCTAGGTGATGCTGCGAGGCCTCTTCACTGTGGCGT
GCAGCCTGACGGCTTTGGGCACGGCtgcctttgtccctcccagTAGATCT
TCGTTCATCTTTCCAACTAgacagcagctgcagcagcagcaaaccACGGG
CAGGGTCATGGCTTTGTACGCGACTAACACTCCGTCCTTGTCTACATTAG
ACCGGCGCGCGCTCCTCTTTAAGTCGGCGGGGTCATTGCTGGGCTTGGTG
GGCCTGAGTCTTGCGCGCCCGGCAGAGGCCGTAGAAGAGGTGCCCCTTGT
GCGAGACAAGCAAGGAGGATTACTGGAGCCGTACACCGATATTGCAAAAG
TGAGTGAATGGAAATAGAAGCGATCGACGTTCACTTGAAAGAGGCTCGAA
TCCATGTTATCAAGAGTGAAGACCTCGAGGGTGATGAAAGTTAGGGACGT
GCAGGCAAGAAAACGGTGCATCTGTCCTGGGTAGAACAAGCAGAGGGAGA
TGGGATAATGCTTGAAACGTCGTGAGATGAAAGGAGATACCATCTTTtgc
aaaggaaaggggaaacagacggggaggggctCGGAACGTCTGAAGGGGCG
CGGCGCGACACTGCCTGGCACTTCTGCCCCACACTCCCCCCTCACACTCA
CTTGCACACGTCTTTTCTTCCACAGGGGCTCAAGCTTTCCCGGCCCTCGG
GCTGGAATCAGTTTGAAGGCACGCCCGAGACCTACGTGGTGAAGTGGAGC
GACATCATCAACCGAGACGAGGTGGTGGTCCTCAACTCGACCCCTGTGAA
GGCCTCTACCACGGCCGTCGACGCTCTGGGCGACGTGCAGGACGTGGGGA
AGAAGCTGGCTGCGGGCCGAGGTGCCGAGCTTGTGGAAGCAAAGGCGCGC
CTGACGGAGGGCGTCCTCTTCTATGAGTTTGAATTCAAGGGCGAGGCTGT
CTCTGAAGTCGCTTGCCTGTGCGTCGCCAAGGGCCGGCTATGGAATCTTA
GCGCCACGAGTGCCACCAAACGGTGGCCCAAGCGTCGCGACCTGCTTAAG
GGCGTCATTGGCTCTTTCTTGCCCAAACTCTGATGGGTATAGCGTGTAGG
AGGAGCCAGGTTGCCAGGCCTGGTGGCTGTGATCCGGTAAGCAGGagtcc
cctcccgccctgttCTTCCTGAGCATCGTTTTAGTTGCGTTGAATTGCAC
GCGATGTTTGTTCACGCATTGGAGACAATGCGTTTCTCATGCATTGGTAG
ACCCCACTAAGGTCATTGCAGCCAGCATGGACCGAAAAAGAGTTGAGAAA
ATAAAAAGGATTGAAAAAGTAAAATCGCTAGCTTTGGATGCATATATGAT
AATTTGCCCCC
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Coding sequence (CDS) from alignment at CM002457.1:643745..645355+

>rna1442 ID=rna1442|Name=rna1442|organism=Nannochloropsis gaditana|type=CDS|length=1470bp|location=Sequence derived from alignment at CM002457.1:643745..645355+ (Nannochloropsis gaditana)
ATGCTGCGAGGCCTCTTCACTGTGGCGTGCAGCCTGACGGCTTTGGGCAC
GGCtgcctttgtccctcccagTAGATCTTCGTTCATCTTTCCAACTAgac
agcagctgcagcagcagcaaaccACGGGCAGGGTCATGGCTTTGTACGCG
ACTAACACTCCGTCCTTGTCTACATTAGACCGGCGCGCGCTCCTCTTTAA
GTCGGCGGGGTCATTGCTGGGCTTGGTGGGCCTGAGTCTTGCGCGCCCGG
CAGAGGCCGTAGAAGAGGTGCCCCTTGTGCGAGACAAGCAAGGAGGATTA
CTGGAGCCGTACACCGATATTGCAAAAGGGCTCAAGCTTTCCCGGCCCTC
GGGCTGGAATCAGTTTGAAGGCACGCCCGAGACCTACGTGGTGAAGTGGA
GCGACATCATCAACCGAGACGAGGTGGTGGTCCTCAACTCGACCCCTGTG
AAGGCCTCTACCACGGCCGTCGACGCTCTGGGCGACGTGCAGGACGTGGG
GAAGAAGCTGGCTGCGGGCCGAGGTGCCGAGCTTGTGGAAGCAAAGGCGC
GCCTGACGGAGGGCGTCCTCTTCTATGAGTTTGAATTCAAGGGCGAGGCT
GTCTCTGAAGTCGCTTGCCTGTGCGTCGCCAAGGGCCGGCTATGGAATCT
TAGCGCCACGAGTGCCACCAAACGGTGGCCCAAGCGTCGCGACCTGCTTA
AGGGCGTCATTGGCTCTTTCTTGCCCAAACTCTGAATGCTGCGAGGCCTC
TTCACTGTGGCGTGCAGCCTGACGGCTTTGGGCACGGCtgcctttgtccc
tcccagTAGATCTTCGTTCATCTTTCCAACTAgacagcagctgcagcagc
agcaaaccACGGGCAGGGTCATGGCTTTGTACGCGACTAACACTCCGTCC
TTGTCTACATTAGACCGGCGCGCGCTCCTCTTTAAGTCGGCGGGGTCATT
GCTGGGCTTGGTGGGCCTGAGTCTTGCGCGCCCGGCAGAGGCCGTAGAAG
AGGTGCCCCTTGTGCGAGACAAGCAAGGAGGATTACTGGAGCCGTACACC
GATATTGCAAAAGGGCTCAAGCTTTCCCGGCCCTCGGGCTGGAATCAGTT
TGAAGGCACGCCCGAGACCTACGTGGTGAAGTGGAGCGACATCATCAACC
GAGACGAGGTGGTGGTCCTCAACTCGACCCCTGTGAAGGCCTCTACCACG
GCCGTCGACGCTCTGGGCGACGTGCAGGACGTGGGGAAGAAGCTGGCTGC
GGGCCGAGGTGCCGAGCTTGTGGAAGCAAAGGCGCGCCTGACGGAGGGCG
TCCTCTTCTATGAGTTTGAATTCAAGGGCGAGGCTGTCTCTGAAGTCGCT
TGCCTGTGCGTCGCCAAGGGCCGGCTATGGAATCTTAGCGCCACGAGTGC
CACCAAACGGTGGCCCAAGCGTCGCGACCTGCTTAAGGGCGTCATTGGCT
CTTTCTTGCCCAAACTCTGA
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Synonyms
Publications