EWM29249.1, cds1439 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29249.1 vs. NCBI_GenBank
Match: gi|585111771|gb|EWM29249.1| (photosystem ii oxygen evolving complex protein [Nannochloropsis gaditana]) HSP 1 Score: 489.96 bits (1260), Expect = 4.112e-175 Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0 Query: 1 MLRGLFTVACSLTALGTAAFVPPSRSSFIFPTRQQLQQQQTTGRVMALYATNTPSLSTLDRRALLFKSAGSLLGLVGLSLARPAEAVEEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFKGEAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL 244 MLRGLFTVACSLTALGTAAFVPPSRSSFIFPTRQQLQQQQTTGRVMALYATNTPSLSTLDRRALLFKSAGSLLGLVGLSLARPAEAVEEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFKGEAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL Sbjct: 1 MLRGLFTVACSLTALGTAAFVPPSRSSFIFPTRQQLQQQQTTGRVMALYATNTPSLSTLDRRALLFKSAGSLLGLVGLSLARPAEAVEEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFKGEAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL 244
BLAST of EWM29249.1 vs. NCBI_GenBank
Match: gi|219125040|ref|XP_002182797.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405591|gb|EEC45533.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 160.999 bits (406), Expect = 1.231e-45 Identity = 82/188 (43.62%), Postives = 119/188 (63.30%), Query Frame = 0 Query: 61 RRALLFKSAGSLLGLVGLSLARPAEAV--EEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALG-DVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFK-GEAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL 244 R+A ++ +++G+ P +A +E P V + GGLLE + D +G ++ PSGWN+FEG Y VKW D+++ E V ++STPVK++T +V ALG DVQ +G KLA R A+L+ A RLTEG+LFY F+F + ++ LCV KGRLW+L A S KRW KR ++ V+ SF+P+L Sbjct: 30 RQAFQAATSAAVIGVSSTIAGHPVQAYPSDETPRVATRMGGLLEAFQDGPRGFRIMIPSGWNKFEGEVGAYDVKWQDLVDPSENVKISSTPVKSTTESVAALGDDVQALGLKLAEKRNAKLISASERLTEGILFYNFDFAIKDGTHQLLQLCVGKGRLWSLDANSKEKRWDKREEMYSNVLASFIPRL 217
BLAST of EWM29249.1 vs. NCBI_GenBank
Match: gi|1072236160|gb|OEU20888.1| (Mog1p/PsbP-like protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 158.303 bits (399), Expect = 3.921e-44 Identity = 73/158 (46.20%), Postives = 107/158 (67.72%), Query Frame = 0 Query: 88 EEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFK-GEAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL 244 EE P + GGLLE + D + +++ PSGWN+F+G Y +KW D++++ E + ++STPVK+STT+++ LG+VQ VG LA+ R A+LV+A RLT+ VLFY FEF + ++ LCV KG+LW++ A+S KRW KR +L V SF+PKL Sbjct: 95 EETPRSVTRMGGLLESFQDGNRSIRMMVPSGWNKFDGEVGAYDIKWQDLVDKSENIKISSTPVKSSTTSIEVLGEVQGVGVNLASKRNAKLVKATERLTDDVLFYRFEFAINDGTHQLLQLCVCKGKLWSIDASSTEKRWSKRAELYDNVFTSFMPKL 252
BLAST of EWM29249.1 vs. NCBI_GenBank
Match: gi|397616356|gb|EJK63943.1| (hypothetical protein THAOC_15373 [Thalassiosira oceanica]) HSP 1 Score: 153.68 bits (387), Expect = 7.035e-43 Identity = 78/184 (42.39%), Postives = 117/184 (63.59%), Query Frame = 0 Query: 66 FKSAGSLLGLVGLSLARPA----EAVEEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFK-GEAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL 244 F A SL+ +A PA E +E P V + GGLLE Y D ++G + PSGWN F+G Y KW D++++ + V ++STPVK++TT+VD LG V+DVGK LA+ R A+L+ A R T+G+LFY F+F + ++ LCV KG++W++ A + K + K++DL ++GSF+PKL Sbjct: 34 FGKAASLIAGAASIVASPASSLAEVTDETPKVTTRMGGLLEKYQD-SRGWTILAPSGWNSFDGEVGAYDKKWQDLVSQTDNVKISSTPVKSTTTSVDILGPVEDVGKSLASKRSAKLIAALERQTDGILFYTFDFALDDGTHQLLQLCVNKGKIWSVDANTLEKSYAKKKDLYYNILGSFMPKL 216
BLAST of EWM29249.1 vs. NCBI_GenBank
Match: gi|551635623|ref|XP_005820643.1| (hypothetical protein GUITHDRAFT_155962 [Guillardia theta CCMP2712] >gi|428164645|gb|EKX33663.1| hypothetical protein GUITHDRAFT_155962 [Guillardia theta CCMP2712]) HSP 1 Score: 152.525 bits (384), Expect = 2.086e-42 Identity = 76/153 (49.67%), Postives = 100/153 (65.36%), Query Frame = 0 Query: 96 KQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFKG----EAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL 244 K GGLL P+ D+ KG ++ RPSGWNQF+ P Y VKW D++ + E+V++ S+PVK S T V+ LG V VG LA+ + AELVEAK G+ FY F FK EV LCV KG+LW+++AT+A KRW KR+DL + SF+PKL Sbjct: 64 KMGGLLSPFKDVNKGFQIFRPSGWNQFDSAPGEYDVKWEDLVEKSELVMVGSSPVK-SATDVNVLGPVDKVGASLASKKKAELVEAKETERSGIRFYTFVFKAGDDKTGAREVYQLCVNKGKLWSVTATTAEKRWNKRKDLYSTIFSSFVPKL 215
BLAST of EWM29249.1 vs. NCBI_GenBank
Match: gi|1210516615|dbj|GAX24450.1| (photosystem II oxygen-evolving enhancer protein 2 [Fistulifera solaris]) HSP 1 Score: 151.369 bits (381), Expect = 4.144e-42 Identity = 86/197 (43.65%), Postives = 122/197 (61.93%), Query Frame = 0 Query: 53 TPSLSTLDRRALLFKSAGSLLGLVGLSLARPAEAV--EEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRG-AELVEAKARLTEGVLFYEFEFK-GEAVSEVACLCVAKGRLWNLSATSATK-RWPKRRDLLKGVIGSFLPKL 244 T + ST RR L +++ + A PA A+ EE P V + GGLLEPY D +G +L PSGWN+F+G Y VKW D+++ E + L+STPVK+S +V ALG ++++G KLAA R A LV+A RLT+G+LFY FEF + ++ L + K +LW+L A + + RW KR +L V+GSF+PKL Sbjct: 14 TAAWSTTTRREALHHMTAAVIA----TSAAPAFALPTEETPRVVTRMGGLLEPYQDGPRGFRLLAPSGWNKFDGEVGAYDVKWQDLVDPLEQIKLSSTPVKSSIESVAALGTLEELGPKLAAKRNQATLVQASERLTDGILFYTFEFALPDQTHQMLLLTIHKSKLWSLDANARNEARWKKRSELYANVVGSFMPKL 206
BLAST of EWM29249.1 vs. NCBI_GenBank
Match: gi|922862141|gb|KOO29798.1| (photosystem ii oxygen evolving complex protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 150.984 bits (380), Expect = 6.358e-42 Identity = 70/148 (47.30%), Postives = 98/148 (66.22%), Query Frame = 0 Query: 96 KQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFKGEAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPK 243 K GGLLEPY D KG KL P GWN+FE P Y VK+ D+I + V ++++PV A+ T+V ALGD+ VG K A R AELV+A+ EG L Y FE KGE E+ LC+ +G+L+ ++ ++ K+WPKR++L K ++ SF+PK Sbjct: 57 KMGGLLEPYIDTQKGYKLYSPKGWNKFESDPGVYDVKFQDVIEPETTVQVSTSPV-ATATSVSALGDLPTVGAKFAKSRNAELVKAEESDVEGSLVYTFELKGELYHELLALCINRGKLYRVTTVTSNKKWPKRQELYKNIVASFVPK 203
BLAST of EWM29249.1 vs. NCBI_GenBank
Match: gi|1210522720|dbj|GAX18416.1| (photosystem II oxygen-evolving enhancer protein 2 [Fistulifera solaris]) HSP 1 Score: 149.058 bits (375), Expect = 3.780e-41 Identity = 76/160 (47.50%), Postives = 106/160 (66.25%), Query Frame = 0 Query: 88 EEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRG-AELVEAKARLTEGVLFYEFEFK-GEAVSEVACLCVAKGRLWNLSATSATK-RWPKRRDLLKGVIGSFLPKL 244 EE P V + GGLLEPY D +G +L PSGWN+F+G Y VKW D+++ E + L+STPVK+S +V ALG V+++G KLAA R A LV+A R+T+G+LFY FEF + ++ L + K +LW+L A + + RW KR +L V+GSF+PKL Sbjct: 48 EETPRVVTRMGGLLEPYQDGPRGFRLLAPSGWNKFDGEVGAYDVKWQDLVDPLEQIKLSSTPVKSSIESVAALGTVEELGPKLAAKRNQATLVQASERITDGILFYTFEFALPDQTHQLLLLTIHKSKLWSLDANARNEGRWKKRSELYANVVGSFMPKL 207
BLAST of EWM29249.1 vs. NCBI_GenBank
Match: gi|299471823|emb|CBN79490.1| (Photosystem II oxygen evolution complex protein PsbP [Ectocarpus siliculosus]) HSP 1 Score: 140.969 bits (354), Expect = 1.199e-37 Identity = 68/157 (43.31%), Postives = 102/157 (64.97%), Query Frame = 0 Query: 88 EEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFKGEAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL 244 ++V LV K GG LEP+ D++KG +L++P GWN+++GT Y VK D+++ +++L ++PVK S T + LG VG+KL+ GR ELV A+ R+TEG+ Y+FEFKG E+ L V K +LWNL+ K W K+ + K ++ SFLP+L Sbjct: 77 KQVKLVTTKLGGKLEPFADVSKGYRLAKPLGWNRYDGTSGEYTVKMVDLVDPTTLILLTNSPVK-SDTELSTLGSATQVGEKLSKGRDMELVSARDRVTEGIRLYDFEFKGGGRRELKTLSVNKNKLWNLTLGCPEKAWEKQEEPFKTIVDSFLPRL 232
BLAST of EWM29249.1 vs. NCBI_GenBank
Match: gi|873237990|emb|CEL96783.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 126.331 bits (316), Expect = 1.949e-31 Identity = 63/167 (37.72%), Postives = 102/167 (61.08%), Query Frame = 0 Query: 87 VEEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFE--GTPET-------YVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFKGEAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL 244 + EVP ++ GG L+PY DI +G KL+RPSGWN+F+ GT + YVVKW D++ + E + + ++ + +++V++LGD +VG KLA R L+ A AR T ++Y FE +GE V E+ L + +G+LW ++ ++ KRWPK + + + SF P + Sbjct: 124 IPEVPPSTNRMGGQLQPYNDIQRGFKLNRPSGWNEFQCVGTEDQVARCKNQYVVKWQDVVEKLEQITV-ASKPVSKSSSVESLGDPAEVGAKLAKIRNCNLIGASARRTRDHVYYTFELQGETVHELVALSIFEGKLWQINCITSEKRWPKMQSTFQETLLSFQPAI 289 The following BLAST results are available for this feature:
BLAST of EWM29249.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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