EWM29249.1, cds1439 (CDS) Nannochloropsis gaditana

Overview
NameEWM29249.1
Unique Namecds1439
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:644017..644343 +
Alignment locationCM002457.1:644670..645077 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29249.1
Productphotosystem ii oxygen evolving complex protein
Orig transcript idgnl|cribi|Naga_100119g18.8007.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:644017..644343 +
CM002457.1supercontigCM002457.1:644670..645077 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid
GO:0016020membrane
GO:0019898extrinsic component of membrane
GO:0009654photosystem II oxygen evolving complex
GO:0009523photosystem II
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR016123Mog1/PsbP_a/b/a-sand
IPR002683PSII_PsbP
Homology
BLAST of EWM29249.1 vs. NCBI_GenBank
Match: gi|585111771|gb|EWM29249.1| (photosystem ii oxygen evolving complex protein [Nannochloropsis gaditana])

HSP 1 Score: 489.96 bits (1260), Expect = 4.112e-175
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0
Query:    1 MLRGLFTVACSLTALGTAAFVPPSRSSFIFPTRQQLQQQQTTGRVMALYATNTPSLSTLDRRALLFKSAGSLLGLVGLSLARPAEAVEEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFKGEAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL 244
            MLRGLFTVACSLTALGTAAFVPPSRSSFIFPTRQQLQQQQTTGRVMALYATNTPSLSTLDRRALLFKSAGSLLGLVGLSLARPAEAVEEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFKGEAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL
Sbjct:    1 MLRGLFTVACSLTALGTAAFVPPSRSSFIFPTRQQLQQQQTTGRVMALYATNTPSLSTLDRRALLFKSAGSLLGLVGLSLARPAEAVEEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFKGEAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL 244          
BLAST of EWM29249.1 vs. NCBI_GenBank
Match: gi|219125040|ref|XP_002182797.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405591|gb|EEC45533.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 160.999 bits (406), Expect = 1.231e-45
Identity = 82/188 (43.62%), Postives = 119/188 (63.30%), Query Frame = 0
Query:   61 RRALLFKSAGSLLGLVGLSLARPAEAV--EEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALG-DVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFK-GEAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL 244
            R+A    ++ +++G+       P +A   +E P V  + GGLLE + D  +G ++  PSGWN+FEG    Y VKW D+++  E V ++STPVK++T +V ALG DVQ +G KLA  R A+L+ A  RLTEG+LFY F+F   +   ++  LCV KGRLW+L A S  KRW KR ++   V+ SF+P+L
Sbjct:   30 RQAFQAATSAAVIGVSSTIAGHPVQAYPSDETPRVATRMGGLLEAFQDGPRGFRIMIPSGWNKFEGEVGAYDVKWQDLVDPSENVKISSTPVKSTTESVAALGDDVQALGLKLAEKRNAKLISASERLTEGILFYNFDFAIKDGTHQLLQLCVGKGRLWSLDANSKEKRWDKREEMYSNVLASFIPRL 217          
BLAST of EWM29249.1 vs. NCBI_GenBank
Match: gi|1072236160|gb|OEU20888.1| (Mog1p/PsbP-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 158.303 bits (399), Expect = 3.921e-44
Identity = 73/158 (46.20%), Postives = 107/158 (67.72%), Query Frame = 0
Query:   88 EEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFK-GEAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL 244
            EE P    + GGLLE + D  + +++  PSGWN+F+G    Y +KW D++++ E + ++STPVK+STT+++ LG+VQ VG  LA+ R A+LV+A  RLT+ VLFY FEF   +   ++  LCV KG+LW++ A+S  KRW KR +L   V  SF+PKL
Sbjct:   95 EETPRSVTRMGGLLESFQDGNRSIRMMVPSGWNKFDGEVGAYDIKWQDLVDKSENIKISSTPVKSSTTSIEVLGEVQGVGVNLASKRNAKLVKATERLTDDVLFYRFEFAINDGTHQLLQLCVCKGKLWSIDASSTEKRWSKRAELYDNVFTSFMPKL 252          
BLAST of EWM29249.1 vs. NCBI_GenBank
Match: gi|397616356|gb|EJK63943.1| (hypothetical protein THAOC_15373 [Thalassiosira oceanica])

HSP 1 Score: 153.68 bits (387), Expect = 7.035e-43
Identity = 78/184 (42.39%), Postives = 117/184 (63.59%), Query Frame = 0
Query:   66 FKSAGSLLGLVGLSLARPA----EAVEEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFK-GEAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL 244
            F  A SL+      +A PA    E  +E P V  + GGLLE Y D ++G  +  PSGWN F+G    Y  KW D++++ + V ++STPVK++TT+VD LG V+DVGK LA+ R A+L+ A  R T+G+LFY F+F   +   ++  LCV KG++W++ A +  K + K++DL   ++GSF+PKL
Sbjct:   34 FGKAASLIAGAASIVASPASSLAEVTDETPKVTTRMGGLLEKYQD-SRGWTILAPSGWNSFDGEVGAYDKKWQDLVSQTDNVKISSTPVKSTTTSVDILGPVEDVGKSLASKRSAKLIAALERQTDGILFYTFDFALDDGTHQLLQLCVNKGKIWSVDANTLEKSYAKKKDLYYNILGSFMPKL 216          
BLAST of EWM29249.1 vs. NCBI_GenBank
Match: gi|551635623|ref|XP_005820643.1| (hypothetical protein GUITHDRAFT_155962 [Guillardia theta CCMP2712] >gi|428164645|gb|EKX33663.1| hypothetical protein GUITHDRAFT_155962 [Guillardia theta CCMP2712])

HSP 1 Score: 152.525 bits (384), Expect = 2.086e-42
Identity = 76/153 (49.67%), Postives = 100/153 (65.36%), Query Frame = 0
Query:   96 KQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFKG----EAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL 244
            K GGLL P+ D+ KG ++ RPSGWNQF+  P  Y VKW D++ + E+V++ S+PVK S T V+ LG V  VG  LA+ + AELVEAK     G+ FY F FK         EV  LCV KG+LW+++AT+A KRW KR+DL   +  SF+PKL
Sbjct:   64 KMGGLLSPFKDVNKGFQIFRPSGWNQFDSAPGEYDVKWEDLVEKSELVMVGSSPVK-SATDVNVLGPVDKVGASLASKKKAELVEAKETERSGIRFYTFVFKAGDDKTGAREVYQLCVNKGKLWSVTATTAEKRWNKRKDLYSTIFSSFVPKL 215          
BLAST of EWM29249.1 vs. NCBI_GenBank
Match: gi|1210516615|dbj|GAX24450.1| (photosystem II oxygen-evolving enhancer protein 2 [Fistulifera solaris])

HSP 1 Score: 151.369 bits (381), Expect = 4.144e-42
Identity = 86/197 (43.65%), Postives = 122/197 (61.93%), Query Frame = 0
Query:   53 TPSLSTLDRRALLFKSAGSLLGLVGLSLARPAEAV--EEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRG-AELVEAKARLTEGVLFYEFEFK-GEAVSEVACLCVAKGRLWNLSATSATK-RWPKRRDLLKGVIGSFLPKL 244
            T + ST  RR  L     +++     + A PA A+  EE P V  + GGLLEPY D  +G +L  PSGWN+F+G    Y VKW D+++  E + L+STPVK+S  +V ALG ++++G KLAA R  A LV+A  RLT+G+LFY FEF   +   ++  L + K +LW+L A +  + RW KR +L   V+GSF+PKL
Sbjct:   14 TAAWSTTTRREALHHMTAAVIA----TSAAPAFALPTEETPRVVTRMGGLLEPYQDGPRGFRLLAPSGWNKFDGEVGAYDVKWQDLVDPLEQIKLSSTPVKSSIESVAALGTLEELGPKLAAKRNQATLVQASERLTDGILFYTFEFALPDQTHQMLLLTIHKSKLWSLDANARNEARWKKRSELYANVVGSFMPKL 206          
BLAST of EWM29249.1 vs. NCBI_GenBank
Match: gi|922862141|gb|KOO29798.1| (photosystem ii oxygen evolving complex protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 150.984 bits (380), Expect = 6.358e-42
Identity = 70/148 (47.30%), Postives = 98/148 (66.22%), Query Frame = 0
Query:   96 KQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFKGEAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPK 243
            K GGLLEPY D  KG KL  P GWN+FE  P  Y VK+ D+I  +  V ++++PV A+ T+V ALGD+  VG K A  R AELV+A+    EG L Y FE KGE   E+  LC+ +G+L+ ++  ++ K+WPKR++L K ++ SF+PK
Sbjct:   57 KMGGLLEPYIDTQKGYKLYSPKGWNKFESDPGVYDVKFQDVIEPETTVQVSTSPV-ATATSVSALGDLPTVGAKFAKSRNAELVKAEESDVEGSLVYTFELKGELYHELLALCINRGKLYRVTTVTSNKKWPKRQELYKNIVASFVPK 203          
BLAST of EWM29249.1 vs. NCBI_GenBank
Match: gi|1210522720|dbj|GAX18416.1| (photosystem II oxygen-evolving enhancer protein 2 [Fistulifera solaris])

HSP 1 Score: 149.058 bits (375), Expect = 3.780e-41
Identity = 76/160 (47.50%), Postives = 106/160 (66.25%), Query Frame = 0
Query:   88 EEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRG-AELVEAKARLTEGVLFYEFEFK-GEAVSEVACLCVAKGRLWNLSATSATK-RWPKRRDLLKGVIGSFLPKL 244
            EE P V  + GGLLEPY D  +G +L  PSGWN+F+G    Y VKW D+++  E + L+STPVK+S  +V ALG V+++G KLAA R  A LV+A  R+T+G+LFY FEF   +   ++  L + K +LW+L A +  + RW KR +L   V+GSF+PKL
Sbjct:   48 EETPRVVTRMGGLLEPYQDGPRGFRLLAPSGWNKFDGEVGAYDVKWQDLVDPLEQIKLSSTPVKSSIESVAALGTVEELGPKLAAKRNQATLVQASERITDGILFYTFEFALPDQTHQLLLLTIHKSKLWSLDANARNEGRWKKRSELYANVVGSFMPKL 207          
BLAST of EWM29249.1 vs. NCBI_GenBank
Match: gi|299471823|emb|CBN79490.1| (Photosystem II oxygen evolution complex protein PsbP [Ectocarpus siliculosus])

HSP 1 Score: 140.969 bits (354), Expect = 1.199e-37
Identity = 68/157 (43.31%), Postives = 102/157 (64.97%), Query Frame = 0
Query:   88 EEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFKGEAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL 244
            ++V LV  K GG LEP+ D++KG +L++P GWN+++GT   Y VK  D+++   +++L ++PVK S T +  LG    VG+KL+ GR  ELV A+ R+TEG+  Y+FEFKG    E+  L V K +LWNL+     K W K+ +  K ++ SFLP+L
Sbjct:   77 KQVKLVTTKLGGKLEPFADVSKGYRLAKPLGWNRYDGTSGEYTVKMVDLVDPTTLILLTNSPVK-SDTELSTLGSATQVGEKLSKGRDMELVSARDRVTEGIRLYDFEFKGGGRRELKTLSVNKNKLWNLTLGCPEKAWEKQEEPFKTIVDSFLPRL 232          
BLAST of EWM29249.1 vs. NCBI_GenBank
Match: gi|873237990|emb|CEL96783.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 126.331 bits (316), Expect = 1.949e-31
Identity = 63/167 (37.72%), Postives = 102/167 (61.08%), Query Frame = 0
Query:   87 VEEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFE--GTPET-------YVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFKGEAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL 244
            + EVP   ++ GG L+PY DI +G KL+RPSGWN+F+  GT +        YVVKW D++ + E + + ++   + +++V++LGD  +VG KLA  R   L+ A AR T   ++Y FE +GE V E+  L + +G+LW ++  ++ KRWPK +   +  + SF P +
Sbjct:  124 IPEVPPSTNRMGGQLQPYNDIQRGFKLNRPSGWNEFQCVGTEDQVARCKNQYVVKWQDVVEKLEQITV-ASKPVSKSSSVESLGDPAEVGAKLAKIRNCNLIGASARRTRDHVYYTFELQGETVHELVALSIFEGKLWQINCITSEKRWPKMQSTFQETLLSFQPAI 289          
The following BLAST results are available for this feature:
BLAST of EWM29249.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111771|gb|EWM29249.1|4.112e-175100.00photosystem ii oxygen evolving complex protein [Na... [more]
gi|219125040|ref|XP_002182797.1|1.231e-4543.62predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072236160|gb|OEU20888.1|3.921e-4446.20Mog1p/PsbP-like protein [Fragilariopsis cylindrus ... [more]
gi|397616356|gb|EJK63943.1|7.035e-4342.39hypothetical protein THAOC_15373 [Thalassiosira oc... [more]
gi|551635623|ref|XP_005820643.1|2.086e-4249.67hypothetical protein GUITHDRAFT_155962 [Guillardia... [more]
gi|1210516615|dbj|GAX24450.1|4.144e-4243.65photosystem II oxygen-evolving enhancer protein 2 ... [more]
gi|922862141|gb|KOO29798.1|6.358e-4247.30photosystem ii oxygen evolving complex protein [Ch... [more]
gi|1210522720|dbj|GAX18416.1|3.780e-4147.50photosystem II oxygen-evolving enhancer protein 2 ... [more]
gi|299471823|emb|CBN79490.1|1.199e-3743.31Photosystem II oxygen evolution complex protein Ps... [more]
gi|873237990|emb|CEL96783.1|1.949e-3137.72unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1442rna1442Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications