rna144, rna144 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna144
Unique Name	rna144
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1801
Alignment location	CM002455.1:368437..370378 -

Link to JBrowse

Properties


Property Name	Value
Product	Ubiquitin
Orig transcript id	gnl\|cribi\|Naga_100013g80.9796.mrna
Orig protein id	gnl\|cribi\|Naga_100013g80.9796
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:368437..370378 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100013g80	gene137	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna144	rna144-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30508.1	cds144	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:368437..370378-
coding sequence from alignment at CM002455.1:368437..370378-

mRNA sequence

>rna144 ID=rna144|Name=rna144|organism=Nannochloropsis gaditana|type=mRNA|length=1801bp
CTCCCCCACAAACATACGCGCCCAACCGTCTTTCACACGTCTCATACACC
ACCGCCGTCTCAAATGAAGGGGAAAATTTCTCACGTTTCGCCTATTCCAC
ATGTTCAGGTCGCGTGCTTTGCGTTGGGGTCGTCGTCCTCAAGCGTAGGA
GGAGCTGCCGCCTTTGTCTAAGAAACTTTGGTTGTACTCCTAAGAGGACG
AGACACGCGTGTACAGTGTGGGACACAAAAGACTGAATCACGACGACTTG
TAGCTTTCTTGGGACGAGGATGTCATCCCGGCAGGGATACCGAGCATTGA
GTGAGGAAAGCTACGATGTAGAGGCCCTTAGCGGCTTAGACGGTCAAGAT
GTCCCTCCCACGACCACATCCACCACCACCACCGGAAACGCCACTACTGC
CTCCACGTCTGCCACTTCTCCGTCGCTTTCTGCCCCCCTTCCAAGATCAT
CTCCAGTTTCCCCGCCTGCTCCCTCCCCAGGGCCTAGTGGACCCCCTCAG
TTTCCCATACGCATTTTAGACACGCACGGGAAAGAGCATGCCCTGGATGC
CGAGAGCCCCTTGTCAACCATCGGCACACTCAAAGTCAAAGTGCAGGCAG
CATCCGGTGTATCACCTGCACAGCAGCGTTTGATATTCGCCGGGCGAATG
TTGCAAGACCAGCAGACGCTTCGGTCGTGCGGGGTGGAGGCGGGCTGCGT
GATCCATTTGTTCGCGCGCCCCCCACCCCCGCCCCCCGGTGCCCCGGGCA
GCATCGCCAGCGTCGTCAACCCTACAAGCGGAGCTGGGACTGAGGGAGGG
ATGGTGGGTCCGGGCACGCACTTGAACCCGTACGGCCTGCCGTCCTCCTT
TGGAGACCCGGAGTTGATCCGGTCCACCCACTCGGTCAAACTCTTCTCCT
CTTGTTTGGTGGCAATATGTGCCATGCAATTGTTGTTGCTGGGGCTGCAG
ATGCTTGCGGCTTGGTCTATGGGTGCGGGAGGGGGAGGAGAGGTGCCTGC
GCCTGGTGATGAGGACGGAGGAGGCGGGGAGCCCGGGGCCAAGGGCGCGG
GAGGTAAAGGGGGCGGGGGAGTGGACGGGGGCAGCGCTCTCTTAATCCTG
CAGGTGATGATGAACACCTTGGGTCTATACGTGGGCCTGGTCGGTATCCG
GAGCGCCAACACTCTCCAGCTGCAATCGACCAAGGTGTACGTGTACGGCT
TGCTGGTGGTGGGCACCGCCTGGATGGCCAGTCGGATTATATGGGCCGTG
AATAGTGTGAACCTCGGGTATGACGTGGACGTCGGCCCCCAGCCCTCCGC
GTCCTCTCCGCCCCCCGGCGCAGGAAACGGCACGGATGACGGAGGCGGGG
GAGGCGGGGAGGCGTATCAGCAGATGGACCGAGGGGAACTGATCTACATG
GTGTCCCTGTCGTGTTTCCTGTACAGCTTGGTGTGGGGCGTCTGCTTCAT
GAGAGCCAGTCAGTTTTATACACTGGTGCGCAGGGCGAACGGGCTGGGAC
CATAGGGTAGAGGGGCGTGCAGGCACAGGATTAAGGGATGTACATTGAGG
CGGGAACTAGAAGGGGGGTGACGATAGCGGAAACCAGGCGACTGGCTTCG
CACGCAAAGACAGCTGCAGGCTTGTGAATTACATGCATCTGAGACTAAGG
TTGTGGTCATACAAAGGAGTGCACGTTCATGAGGTCCAACGTCGGAATGG
GCCCACGCAGAGGGTCATAGATGTCGGATAGGCCATCTCCTTTTACCCTG
TGGGATTTGGGGGCAAACATAGAACAAGACATCTCGGAGACACTTTGTCC
T

protein sequence of rna144

>rna144-protein ID=rna144-protein|Name=rna144|organism=Nannochloropsis gaditana|type=polypeptide|length=412bp
MSSRQGYRALSEESYDVEALSGLDGQADVPPTTTSTTTTGNATTASTSAT
SPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLS
TIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFA
RPPPPPPGAPGSIASVVNPTSGAGTEGGMVGPGTHLNPYGLPSSFGDPEL
IRSTHSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAGGGGEVPAPGDED
GGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTL
QLQSTKVYVYGLLVVGTAWMASRIIWAVNSVNLGYDVDVGPQPSASSPPP
GAGNGTDDGGGGGGEAYQQMDRGELIYMVSLSCFLYSLVWGVCFMRASQF
YTLVRRANGLGP

mRNA from alignment at CM002455.1:368437..370378-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna144 ID=rna144|Name=rna144|organism=Nannochloropsis gaditana|type=mRNA|length=1942bp|location=Sequence derived from alignment at CM002455.1:368437..370378- (Nannochloropsis gaditana)
CTCCCCCACAAACATACGCGCCCAACCGTCTTTCACACGTCTCATACACC
ACCGCCGTCTCAAATGAAGGGGAAAATTTCTCACGTTTCGCCTATTCCAC
ATGTTCAGGTCGCGTGCTTTGCGTTGGGGTCGTCGTCCTCAAGCGTAGGA
GGAGCTGCCGCCTTTGTCTAAGAAACTTTGGTTGTACTCCTAAGAGGACG
AGACACGCGTGTACAGTGTGGGACACAAAAGACTGAATCACGACGACTTG
TAGCTTTCTTGGGACGAGGATGTCATCCCGGCAGGGATACCGAGCATTGA
GTGAGGAAAGCTACGATGTAGAGGCCCTTAGCGGCTTAGACGGTCAAGGT
ATGACTTTCGGGACTGGCAATAGGTGGAGGAATAGGGTGAAAGAAAGCGT
ACGGGGGACTCCACAGAGAGGAACGGCCAACGGACGACGAGACACGTGCT
AATCTGTCTCTGCTCCCTTTCATATGCCAACCAAAGCAGATGTCCCTCCC
ACGACCACATCCACCACCACCACCGGAAACGCCACTACTGCCTCCACGTC
TGCCACTTCTCCGTCGCTTTCTGCCCCCCTTCCAAGATCATCTCCAGTTT
CCCCGCCTGCTCCCTCCCCAGGGCCTAGTGGACCCCCTCAGTTTCCCATA
CGCATTTTAGACACGCACGGGAAAGAGCATGCCCTGGATGCCGAGAGCCC
CTTGTCAACCATCGGCACACTCAAAGTCAAAGTGCAGGCAGCATCCGGTG
TATCACCTGCACAGCAGCGTTTGATATTCGCCGGGCGAATGTTGCAAGAC
CAGCAGACGCTTCGGTCGTGCGGGGTGGAGGCGGGCTGCGTGATCCATTT
GTTCGCGCGCCCCCCACCCCCGCCCCCCGGTGCCCCGGGCAGCATCGCCA
GCGTCGTCAACCCTACAAGCGGAGCTGGGACTGAGGGAGGGATGGTGGGT
CCGGGCACGCACTTGAACCCGTACGGCCTGCCGTCCTCCTTTGGAGACCC
GGAGTTGATCCGGTCCACCCACTCGGTCAAACTCTTCTCCTCTTGTTTGG
TGGCAATATGTGCCATGCAATTGTTGTTGCTGGGGCTGCAGATGCTTGCG
GCTTGGTCTATGGGTGCGGGAGGGGGAGGAGAGGTGCCTGCGCCTGGTGA
TGAGGACGGAGGAGGCGGGGAGCCCGGGGCCAAGGGCGCGGGAGGTAAAG
GGGGCGGGGGAGTGGACGGGGGCAGCGCTCTCTTAATCCTGCAGGTGATG
ATGAACACCTTGGGTCTATACGTGGGCCTGGTCGGTATCCGGAGCGCCAA
CACTCTCCAGCTGCAATCGACCAAGGTGTACGTGTACGGCTTGCTGGTGG
TGGGCACCGCCTGGATGGCCAGTCGGATTATATGGGCCGTGAATAGTGTG
AACCTCGGGTATGACGTGGACGTCGGCCCCCAGCCCTCCGCGTCCTCTCC
GCCCCCCGGCGCAGGAAACGGCACGGATGACGGAGGCGGGGGAGGCGGGG
AGGCGTATCAGCAGATGGACCGAGGGGAACTGATCTACATGGTGTCCCTG
TCGTGTTTCCTGTACAGCTTGGTGTGGGGCGTCTGCTTCATGAGAGCCAG
TCAGTTTTATACACTGGTGCGCAGGGCGAACGGGCTGGGACCATAGGGTA
GAGGGGCGTGCAGGCACAGGATTAAGGGATGTACATTGAGGCGGGAACTA
GAAGGGGGGTGACGATAGCGGAAACCAGGCGACTGGCTTCGCACGCAAAG
ACAGCTGCAGGCTTGTGAATTACATGCATCTGAGACTAAGGTTGTGGTCA
TACAAAGGAGTGCACGTTCATGAGGTCCAACGTCGGAATGGGCCCACGCA
GAGGGTCATAGATGTCGGATAGGCCATCTCCTTTTACCCTGTGGGATTTG
GGGGCAAACATAGAACAAGACATCTCGGAGACACTTTGTCCT

Coding sequence (CDS) from alignment at CM002455.1:368437..370378-

>rna144 ID=rna144|Name=rna144|organism=Nannochloropsis gaditana|type=CDS|length=2478bp|location=Sequence derived from alignment at CM002455.1:368437..370378- (Nannochloropsis gaditana)
CAGATGTCCCTCCCACGACCACATCCACCACCACCACCGGAAACGCCACT
ACTGCCTCCACGTCTGCCACTTCTCCGTCGCTTTCTGCCCCCCTTCCAAG
ATCATCTCCAGTTTCCCCGCCTGCTCCCTCCCCAGGGCCTAGTGGACCCC
CTCAGTTTCCCATACGCATTTTAGACACGCACGGGAAAGAGCATGCCCTG
GATGCCGAGAGCCCCTTGTCAACCATCGGCACACTCAAAGTCAAAGTGCA
GGCAGCATCCGGTGTATCACCTGCACAGCAGCGTTTGATATTCGCCGGGC
GAATGTTGCAAGACCAGCAGACGCTTCGGTCGTGCGGGGTGGAGGCGGGC
TGCGTGATCCATTTGTTCGCGCGCCCCCCACCCCCGCCCCCCGGTGCCCC
GGGCAGCATCGCCAGCGTCGTCAACCCTACAAGCGGAGCTGGGACTGAGG
GAGGGATGGTGGGTCCGGGCACGCACTTGAACCCGTACGGCCTGCCGTCC
TCCTTTGGAGACCCGGAGTTGATCCGGTCCACCCACTCGGTCAAACTCTT
CTCCTCTTGTTTGGTGGCAATATGTGCCATGCAATTGTTGTTGCTGGGGC
TGCAGATGCTTGCGGCTTGGTCTATGGGTGCGGGAGGGGGAGGAGAGGTG
CCTGCGCCTGGTGATGAGGACGGAGGAGGCGGGGAGCCCGGGGCCAAGGG
CGCGGGAGGTAAAGGGGGCGGGGGAGTGGACGGGGGCAGCGCTCTCTTAA
TCCTGCAGGTGATGATGAACACCTTGGGTCTATACGTGGGCCTGGTCGGT
ATCCGGAGCGCCAACACTCTCCAGCTGCAATCGACCAAGGTGTACGTGTA
CGGCTTGCTGGTGGTGGGCACCGCCTGGATGGCCAGTCGGATTATATGGG
CCGTGAATAGTGTGAACCTCGGGTATGACGTGGACGTCGGCCCCCAGCCC
TCCGCGTCCTCTCCGCCCCCCGGCGCAGGAAACGGCACGGATGACGGAGG
CGGGGGAGGCGGGGAGGCGTATCAGCAGATGGACCGAGGGGAACTGATCT
ACATGGTGTCCCTGTCGTGTTTCCTGTACAGCTTGGTGTGGGGCGTCTGC
TTCATGAGAGCCAGTCAGTTTTATACACTGGTGCGCAGGGCGAACGGGCT
GGGACCATAGATGTCATCCCGGCAGGGATACCGAGCATTGAGTGAGGAAA
GCTACGATGTAGAGGCCCTTAGCGGCTTAGACGGTCAAGCAGATGTCCCT
CCCACGACCACATCCACCACCACCACCGGAAACGCCACTACTGCCTCCAC
GTCTGCCACTTCTCCGTCGCTTTCTGCCCCCCTTCCAAGATCATCTCCAG
TTTCCCCGCCTGCTCCCTCCCCAGGGCCTAGTGGACCCCCTCAGTTTCCC
ATACGCATTTTAGACACGCACGGGAAAGAGCATGCCCTGGATGCCGAGAG
CCCCTTGTCAACCATCGGCACACTCAAAGTCAAAGTGCAGGCAGCATCCG
GTGTATCACCTGCACAGCAGCGTTTGATATTCGCCGGGCGAATGTTGCAA
GACCAGCAGACGCTTCGGTCGTGCGGGGTGGAGGCGGGCTGCGTGATCCA
TTTGTTCGCGCGCCCCCCACCCCCGCCCCCCGGTGCCCCGGGCAGCATCG
CCAGCGTCGTCAACCCTACAAGCGGAGCTGGGACTGAGGGAGGGATGGTG
GGTCCGGGCACGCACTTGAACCCGTACGGCCTGCCGTCCTCCTTTGGAGA
CCCGGAGTTGATCCGGTCCACCCACTCGGTCAAACTCTTCTCCTCTTGTT
TGGTGGCAATATGTGCCATGCAATTGTTGTTGCTGGGGCTGCAGATGCTT
GCGGCTTGGTCTATGGGTGCGGGAGGGGGAGGAGAGGTGCCTGCGCCTGG
TGATGAGGACGGAGGAGGCGGGGAGCCCGGGGCCAAGGGCGCGGGAGGTA
AAGGGGGCGGGGGAGTGGACGGGGGCAGCGCTCTCTTAATCCTGCAGGTG
ATGATGAACACCTTGGGTCTATACGTGGGCCTGGTCGGTATCCGGAGCGC
CAACACTCTCCAGCTGCAATCGACCAAGGTGTACGTGTACGGCTTGCTGG
TGGTGGGCACCGCCTGGATGGCCAGTCGGATTATATGGGCCGTGAATAGT
GTGAACCTCGGGTATGACGTGGACGTCGGCCCCCAGCCCTCCGCGTCCTC
TCCGCCCCCCGGCGCAGGAAACGGCACGGATGACGGAGGCGGGGGAGGCG
GGGAGGCGTATCAGCAGATGGACCGAGGGGAACTGATCTACATGGTGTCC
CTGTCGTGTTTCCTGTACAGCTTGGTGTGGGGCGTCTGCTTCATGAGAGC
CAGTCAGTTTTATACACTGGTGCGCAGGGCGAACGGGCTGGGACCATAGA
TGTCATCCCGGCAGGGATACCGAGCATTGAGTGAGGAAAGCTACGATGTA
GAGGCCCTTAGCGGCTTAGACGGTCAAG

Synonyms

Publications