EWM30508.1, cds144 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30508.1 vs. NCBI_GenBank
Match: gi|585113172|gb|EWM30508.1| (Ubiquitin [Nannochloropsis gaditana]) HSP 1 Score: 818.15 bits (2112), Expect = 0.000e+0 Identity = 412/412 (100.00%), Postives = 412/412 (100.00%), Query Frame = 0
Query: 1 MSSRQGYRALSEESYDVEALSGLDGQADVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFARPPPPPPGAPGSIASVVNPTSGAGTEGGMVGPGTHLNPYGLPSSFGDPELIRSTHSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMASRIIWAVNSVNLGYDVDVGPQPSASSPPPGAGNGTDDGGGGGGEAYQQMDRGELIYMVSLSCFLYSLVWGVCFMRASQFYTLVRRANGLGP 412
MSSRQGYRALSEESYDVEALSGLDGQADVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFARPPPPPPGAPGSIASVVNPTSGAGTEGGMVGPGTHLNPYGLPSSFGDPELIRSTHSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMASRIIWAVNSVNLGYDVDVGPQPSASSPPPGAGNGTDDGGGGGGEAYQQMDRGELIYMVSLSCFLYSLVWGVCFMRASQFYTLVRRANGLGP
Sbjct: 1 MSSRQGYRALSEESYDVEALSGLDGQADVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFARPPPPPPGAPGSIASVVNPTSGAGTEGGMVGPGTHLNPYGLPSSFGDPELIRSTHSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMASRIIWAVNSVNLGYDVDVGPQPSASSPPPGAGNGTDDGGGGGGEAYQQMDRGELIYMVSLSCFLYSLVWGVCFMRASQFYTLVRRANGLGP 412
BLAST of EWM30508.1 vs. NCBI_GenBank
Match: gi|585113173|gb|EWM30509.1| (Ubiquitin [Nannochloropsis gaditana]) HSP 1 Score: 811.601 bits (2095), Expect = 0.000e+0 Identity = 411/412 (99.76%), Postives = 411/412 (99.76%), Query Frame = 0
Query: 1 MSSRQGYRALSEESYDVEALSGLDGQADVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFARPPPPPPGAPGSIASVVNPTSGAGTEGGMVGPGTHLNPYGLPSSFGDPELIRSTHSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMASRIIWAVNSVNLGYDVDVGPQPSASSPPPGAGNGTDDGGGGGGEAYQQMDRGELIYMVSLSCFLYSLVWGVCFMRASQFYTLVRRANGLGP 412
MSSRQGYRALSEESYDVEALSGLDGQ DVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFARPPPPPPGAPGSIASVVNPTSGAGTEGGMVGPGTHLNPYGLPSSFGDPELIRSTHSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMASRIIWAVNSVNLGYDVDVGPQPSASSPPPGAGNGTDDGGGGGGEAYQQMDRGELIYMVSLSCFLYSLVWGVCFMRASQFYTLVRRANGLGP
Sbjct: 1 MSSRQGYRALSEESYDVEALSGLDGQ-DVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFARPPPPPPGAPGSIASVVNPTSGAGTEGGMVGPGTHLNPYGLPSSFGDPELIRSTHSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMASRIIWAVNSVNLGYDVDVGPQPSASSPPPGAGNGTDDGGGGGGEAYQQMDRGELIYMVSLSCFLYSLVWGVCFMRASQFYTLVRRANGLGP 411
BLAST of EWM30508.1 vs. NCBI_GenBank
Match: gi|553179171|ref|XP_005852660.1| (hypothetical protein NGA_0699500, partial [Nannochloropsis gaditana CCMP526] >gi|422295872|gb|EKU23171.1| hypothetical protein NGA_0699500, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 279.256 bits (713), Expect = 1.077e-90 Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 0
Query: 1 MSSRQGYRALSEESYDVEALSGLDGQADVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGC 144
MSSRQGYRALSEESYDVEALSGLDGQ DVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGC
Sbjct: 1 MSSRQGYRALSEESYDVEALSGLDGQ-DVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGC 143
BLAST of EWM30508.1 vs. NCBI_GenBank
Match: gi|1173935267|gb|OQR86411.1| (ubiquitin family protein [Achlya hypogyna]) HSP 1 Score: 82.8037 bits (203), Expect = 2.521e-13 Identity = 79/297 (26.60%), Postives = 124/297 (41.75%), Query Frame = 0
Query: 44 TASTSATSPSLSAPLPRSSPVSPP-------APSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFAR---PPPPPPGAPGSIASVVNPTSGAGTEGGMV--GPGTHLNPYGLPSSFG---DPELIRS-----THSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGG---VDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGT 317
+++ A P+ + PR++PV P A P IRILD +GK + A +P+ + TLK V+ SGV +QRLI+ GR+L+D+ TL +E G +HLF R PP P A S ++ PT + G + PS DP ++ S VKL++S ++ I M+LL GE + + + K D S + ++ G+YVG VG ++A+ L+ + YV G+ V+
Sbjct: 56 SSADEAQMPAATISSPRAAPVPPVQENEAEVALDPLEDASGNLRIRILDLNGKVFDIHA-APVWPVATLKSVVRNKSGVEEGRQRLIYRGRVLEDEMTLGDAKLEDGHTVHLFVRQVAAPPEPDFAATSSSAAPVPTFNFDDHAHQIHFGANETITSAVFPSESARRMDPLMLDSPLGIAARRVKLWASFILIINTMKLL-----------------GEFAFLANLRAMHAQRNVDESIEKMYKYSPLYDSNSYVTAAKLFSYAWGVYVGCVGFKAAHDTDLRPIRTYVTGIAVLAV 334
BLAST of EWM30508.1 vs. NCBI_GenBank
Match: gi|695374188|ref|XP_009515233.1| (hypothetical protein PHYSODRAFT_468224 [Phytophthora sojae] >gi|348688144|gb|EGZ27958.1| hypothetical protein PHYSODRAFT_468224 [Phytophthora sojae]) HSP 1 Score: 80.1073 bits (196), Expect = 9.894e-13 Identity = 76/267 (28.46%), Postives = 116/267 (43.45%), Query Frame = 0
Query: 74 SGPPQFPIRILDTHGKEHALDAESPLS-TIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFARPPPPPPGAPGSIASVVNPTSGAGTEGGMVGPGTHLNPYGLPSSFG--------DPELIRS-----THSVKLFSSCLVAICAMQL-----LLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMA 321
+ P +RILD +GK D L T+ +K KV ++ V+ A QRLI+ GR+L+D+ +L S VE G IHLF R P P + N +S G + G+ H+N + S+ DP ++ S VKL+SS L+ I M++ LL Q A G G D P GG L++M++ G+YVG VG ++A+ ++ + Y G++ W+A
Sbjct: 65 ADPDAIHVRILDLNGK--FFDVACKLDWTVAHMKQKVLESTEVAVASQRLIYRGRVLEDENSLASYKVEDGHTIHLFVRAAPTPDPEILNAELNANGSSSGGRDDGIT--VVHINSDIVSSAVFPSDSARRVDPLMLDSPLGNCARRVKLWSSFLLIIYTMKVMGQFALLANDQQQRAAQQEREGAGASETDRPMDRYDEYPQYYTPDPLIGG----------LELMVHCFGVYVGCVGFKAAHDTDIRPIRFYCRGVV-----WLA 312
BLAST of EWM30508.1 vs. NCBI_GenBank
Match: gi|219115045|ref|XP_002178318.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410053|gb|EEC49983.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 79.337 bits (194), Expect = 2.076e-12 Identity = 90/355 (25.35%), Postives = 151/355 (42.54%), Query Frame = 0
Query: 78 QFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGV-EAGCVIHLFARPP---PPPPGAPG--SIASVVNPTSGAGTEGGMVGPGTHLNPYGLPSS----------FGDPELIRSTHSVKLFSSCLVAICAMQLL-LLGL-------QMLAAWSMGAGGG--GEVPAPGDEDGGGGEPGAKGAG-----GKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMASRIIWAVNSVNLGYDVDVGPQPSASSPPPGAGNGTDDGGGGGGEAYQQMDRGELIYMVSLSCFLYSLVWGVCFMRASQFY 401
+ + ILD K+ + A S +T+ LK V ++QRLIF G++L D L + G+ E G ++HLF +P A G ++ S N + + TE H+ L ++ G E I + ++VKLFS L+ I ++LL LL + Q A++ +G G +P + + +P + + G S + + ++ LG+YV ++G+R++N L+ K Y+YG ++ G WMA + YD D Q +A D E+ +++ L MV L +VW +C RA QF+
Sbjct: 103 RINVVILDYTQKKFNV-AVSSSTTVAVLKQNGAIVHKVPASRQRLIFRGQLLADTTLLANAGIKEDGVIVHLFPKPRVVIQDSNAASGGNALNSDANAENSSQTEDA---DAAHVPTIFLETTEAERRSQILVLGSVEFIETQNNVKLFSFMLLIISCIELLNLLAIALGVPQDQDEASYPVGEEDDILGPLPPSLETNDAWSQPSSNSSDTGSDTNTAGVTYTDWSGANWVDLAVSVLGVYVAMLGLRASNENTLRLAKRYLYGTVLAGVGWMALNYF-------MTYDKD--KQYAAERASHHT-----DTDFVPIESTRELLEAALSVMV-----LPGMVWMLCVYRAWQFH 434
BLAST of EWM30508.1 vs. NCBI_GenBank
Match: gi|1214713201|gb|OWZ24104.1| (Ubiquitin family protein [Phytophthora megakarya]) HSP 1 Score: 77.0258 bits (188), Expect = 7.942e-12 Identity = 79/313 (25.24%), Postives = 125/313 (39.94%), Query Frame = 0
Query: 39 TGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFAR-PPPPPPGAPGSIASVVNPTSGAGTEGGMV---------------GPGTHLNPYGLPSSFGDPELIRSTHSVKLFSSCLVAICAMQ------LLLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMASRIIWAVN 329
T T+ + T + +S P + P +RILD +GK + T+ +K KVQ ++ V+ QRLI+ GR+L+D +L S VE G IHLF R P P P + + +SGA +G V ++P L S G+ VKL+SS L+ I M+ LL Q AA G G P + P GG ++++++ G+YVG VG ++A+ ++ + Y G++ + +A +I V
Sbjct: 23 TAQEDTSEDTQTPKTTQEDTKDTSEDPSQQPDDEDADPEAIHVRILDLNGKFFNITCRLDW-TVAHMKQKVQESTEVAVPSQRLIYRGRVLEDDNSLDSYKVEDGHTIHLFVRAAPTPDPEILNAELNANGSSSGAREDGITVVNINSDIVSSAVFPSDSARRVDPLMLDSPLGN-----CARRVKLWSSFLLIIYTMKVMGQFALLANDQQQRAAQQEREGTGASETDPRPMERYDEYPQFYTPDPLIGG----------IELLVHCFGVYVGCVGFKAAHDTDIRPIRFYCRGVVWLAILTVAEQIYTTVQ 319
BLAST of EWM30508.1 vs. NCBI_GenBank
Match: gi|813148982|ref|XP_012200138.1| (hypothetical protein SPRG_19911 [Saprolegnia parasitica CBS 223.65] >gi|641535327|gb|KDO29245.1| hypothetical protein SPRG_19911 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 77.411 bits (189), Expect = 9.283e-12 Identity = 81/292 (27.74%), Postives = 124/292 (42.47%), Query Frame = 0
Query: 45 ASTSATSPSLSAPLPRSSPVSP-----PAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFAR----PPPPPPGAPGSIASVVNPTSGAGTEGGMVGPGTH--LNPYGLPSSFG---DPELIRS-----THSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGT 317
+S T ++S+P +PV P PA P IRILD +GK + A + +G LK V+ SGV ++QRLI+ GR+L D+ TL +E G +HLF R PP P + S +SV PT + G + + PS DP ++ S VKL++S ++ I M+ LLG A V A ++ K DG S + ++ G+YVG VG ++A+ L+ + Y G+ ++
Sbjct: 59 SSADDTHATVSSPRAAPAPVEPSHHDAPALDPLEDVGGNLRIRILDLNGKVFDIHASAEWP-VGQLKAVVRNKSGVDESRQRLIYRGRVLDDEGTLSEYKLEDGHTVHLFVRQVATPPEPEAASQASASSVPPPTFSFDDHHHQIHFGANETITSAVFPSESARRLDPLMLDSPLGIAARRVKLWASFILIINTMK--LLGEFAFLANMRAMHAQRNVDANIEK------------MYKYSPLYDGNSYVTAAKLFSYAWGVYVGCVGFKAAHDTDLRPIRTYCSGIAILAV 335
BLAST of EWM30508.1 vs. NCBI_GenBank
Match: gi|669154662|ref|XP_008612893.1| (hypothetical protein SDRG_08774 [Saprolegnia diclina VS20] >gi|530735428|gb|EQC33670.1| hypothetical protein SDRG_08774 [Saprolegnia diclina VS20]) HSP 1 Score: 76.2554 bits (186), Expect = 1.990e-11 Identity = 88/322 (27.33%), Postives = 131/322 (40.68%), Query Frame = 0
Query: 27 ADVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPP--QFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFAR----PPPP-----------PP--------------GAPGSIASVVNPTSGAGTEGGMVGPGTHLNPYGLPSSFGDPELIRSTHSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGT 317
+D T+ +A A + +SP +AP P + P AP+ P IRILD +GK + A + + LK V+ SGV ++QRLI+ GR+L+D+ TL +E G +HLF R PP P PP GA +I S V P+ A L+P L S G + VKL++S ++ I M+ LLG A V A ++ K DG S + ++ G+YVG VG ++A+ L+ + YV G+ V+
Sbjct: 47 SDARATSPRLRRRSSADEAHATVSSPR-AAPTP-AEPSHHDAPALDPLEDVGGNLRIRILDLNGKVFEIYANATWP-VSQLKAVVRNKSGVDESRQRLIYRGRVLEDEGTLSEYKLEDGHTVHLFVRQVATPPEPEAASQASSSSVPPPNFNFDDHHHQIHFGANETITSAVFPSESA----------RRLDPLMLDSPLGI-----AARRVKLWASFILIINTMK--LLGEFAFLANMRAMHAQRNVDANIEK------------MYKYSPLYDGNSYVTAAKLFSYAWGVYVGCVGFKAAHDTDLRPIRTYVSGIAVLAV 336
BLAST of EWM30508.1 vs. NCBI_GenBank
Match: gi|1173944063|gb|OQR92840.1| (regulator of chromosome condensation (RCC1) [Thraustotheca clavata]) HSP 1 Score: 76.2554 bits (186), Expect = 3.580e-11 Identity = 83/311 (26.69%), Postives = 125/311 (40.19%), Query Frame = 0
Query: 27 ADVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQ--FPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFARPPPPPPGAPGSIASVVNPTSGAGTEGGMVGPGTHLNPYG---------LPSSFG---DPELIRS-----THSVKLFSSCLVAICAMQLL--LLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVG 316
AD P + A A + +SP ++ P + V+P P+ P IRILD +GK + S S + LK VQ S V A+QRLI+ GR+L+DQ TL +E G +HLF R PP + AS ++ + E P H +G PS DP ++ S VKL++S ++ I M+LL L L A G + K D S + ++ G+YVG VG ++A+ L+ + Y G++ +
Sbjct: 429 ADSRPNSPRLRRRNTAEEAQATISSPRVTEP-EETITVAPTVPALDPLEDEHGNLHIRILDLNGKVFDVHGASDWS-VARLKTVVQHKSNVDEARQRLIYRGRVLEDQLTLGEYKLEDGHTVHLFVRQVATPPEPEAASASA---SNPSSREFNFDDPHVHHIHFGTNETITSAVFPSESARRMDPLMLDSPLGIAARRVKLWASFILIINTMKLLGEFAFLANLRAMHSQHNVDGNIEKM----------------YKYSPLYDSNSYVTACKLFSYAWGVYVGCVGFKAAHDTDLRPIRTYCTGIVFLA 718 The following BLAST results are available for this feature:
BLAST of EWM30508.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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