rna1436, rna1436 (mRNA) Nannochloropsis gaditana

Overview
Namerna1436
Unique Namerna1436
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1501
Alignment locationCM002457.1:626004..627147 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100119g12.8001.mrna
Orig protein idgnl|cribi|Naga_100119g12.8001
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:626004..627147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100119g12gene1386Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1436rna1436-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29243.1cds1434Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1436 ID=rna1436|Name=rna1436|organism=Nannochloropsis gaditana|type=mRNA|length=1501bp
TAAAAAGTCCCGTAATTTAGCGCTGTCGAAGGAGAGAGCCGCCGTGGTCT
CTCTGCCATGAATTCTAGTCGCAATCAAGACTGTGTCTTGGGCCTTTTTC
GCGGATCGGACTGTCGTCATGGATGCTGCTATGTGTGAGAAAGAACTGTT
AGGTGGTTAAAGAAAGACTTTCCCTTGCAATCGGCTACTCCGAGTCGTCG
CTCAAGCCGCTGAAAGACGGCGGTCTTCAACAGCAACACCCACCCTTACG
CCCTGTAGATTGAAATCCATCCACTAAGTGAGCACAGGAAAGCTGGCTGG
TAGCCTGAGTGTCAGGATGGGAAGGGTGGCAAGGACGTCAGGCATTGCTT
TTTCCCGTCAAATCAGAAACCCTATGTATGCAGGATCGTGTGGCTTTGCT
TCTGGCGGCCGGGGTGACTGGCAAGAGAGGGATGACGTACTAGCTTTTGC
ACGCCAAAGTCCGATCTATGACAAATGCTTTTCCGAGCAAAACCCAGCCA
ACCTCCCATCCGCGCAGGAGTGGGTCGACAAGGGCCTTTTCCTCAGGGAC
AAGCTCTCGGTCGGACAAGCTACACCGATAAATTCAAATTTTGGCATCAG
AATATTCCATTTCTATCTACCGCTCTATTTTTGGTTGCGCTACCTTGTGC
GTTGCCGTCGAGGACAGGACCTTCCCACAGGGACCCAAAACAACAGTGAA
CCTCTTTGTTCGCAGCCACGCACTATAGTGGTCGGCTTGAATGCTCCACA
GGGGGCTGGCAAAACGACGCTCGTCAATTTGTGCCGAGCACTCTTTAGTC
TCGACGGTCTTTCCTGCGTGGCGCTCTCCATCGACGACTTTTACCTCACA
AACGACGACCAGCAGCGTTTGGCGGCTCAGCATAGTGGAAACCGTCTTTT
GGAGCATCGTGGAAATGCAGGGACGCATGACGTGGCCCTTGGACGCGACA
CGATCATCCAATGTGTCCAGGCCGGAGAAGGAGAAAAGGTGGCGCTGCCG
CGATACGACAAATCCCTTGGCGCGGGCAGGGGAGACCGGGCACACCGGCA
GCAGTGGCCAGTGGTAGAGGGACGGATCGACGTGGTGCTGCTCGAGGGTT
GGATGCTGGGTTTCCGGCCCCTACCCCCCGACGCACCACAGCTGCAGAAG
GAGGCGGGCCTGGCTCAAGTCAACGCGAACCTAGGGGAGTACGAGCAGTG
GCATGCACTGGTGGACGCGTGGGCAGTGATACAGGTGGAAGACCTGTCAA
TTATCGCCTCGTGGCGTCTGGAGGCAGAGCGAGGCATGCGGCGAGAGAGA
GGAGCGGAGGGGGGCATGACGGACGCCCAGGTGCGAGACTTTGTCTCCCG
TTTCATGCCATCTTACACGGCCTTTTCAGAGCATTCCATCTACAACGAGG
ACGAACTTTCACGGAAAAAACCAGTGCTTCGTATCTTTTTTGACAAAGAA
CGGAACCCAACAGGTTGAATCAAAGCGAATAGTCAATAGTCGACTGACAG
G
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protein sequence of rna1436

>rna1436-protein ID=rna1436-protein|Name=rna1436|organism=Nannochloropsis gaditana|type=polypeptide|length=314bp
MTTVRSAKKAQDTVLIATRIHGRETTAALSFDSAKLRDFLHNTVAYADAV
AVAVEVADPFHPRLLVAAQDVVKEFKGCRINVLPVTPWGHFVPALNAALS
FAMQEDFSYILYLSLEMDLTPMAFRALLDNFDPAEDLVVGAALEGHHFRP
GRQPLTGATAPWNTCALWSVSKLSLTGFLAVSEGLASDKGMGGVEEVAVI
CLAQQCLQPRPSVSLSSIFRWNLKPSESVHSKRNAAGMRAKLLHLQGQIS
WKVDWSDPARQEWHRKKMESKLTRAGSQLRALGLAHPTHEASAATAVVWH
LEVPHVLTESPVVT
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mRNA from alignment at CM002457.1:626004..627147+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1436 ID=rna1436|Name=rna1436|organism=Nannochloropsis gaditana|type=mRNA|length=1144bp|location=Sequence derived from alignment at CM002457.1:626004..627147+ (Nannochloropsis gaditana)
ATGACGACAGTCCGATCCGCGAAAAAGGCCCAAGACACAGTCTTGATTGC
GACTAGAATTCATGGCAGAGAGACCACGGCGGCTCTCTCCTTCGACAGCG
CTAAATTACGGGACTTTTTACATAATACTGTAGCGTACGCTGATGCGGTG
GCGGTTGCTGTCGAGGTGGCAGATCCATTCCATCCCCGACTGCTGGTAGC
TGCGCAAGATGTCGTCAAAGAGTTTAAGGGCTGTCGCATCAACGTCCTGC
CCGTCACACCGTGGGGTCATTTTGTGCCTGCATTAAACGCAGCTCTATCA
TTTGCCATGCAGGAGGACTTCTCATACATCCTGTACCTCTCCTTAGAGAT
GGACCTGACCCCAATGGCTTTCCGTGCGCTCCTTGACAACTTTGACCCGG
CAGAGGATTTAGTTGTTGGCGCTGGTGAGTATTTTTTTCCAGAGGCATAT
GGATTCTCGTCAGGTTCTGATTTTCACATAAAACGGTCCGTGGAGTTGCT
CGAGCGGGCCTTCGCTCTCCCTGTAACTTGTGAATTCGATTATGCTCACA
GAAAAATCACCATGCTTCCATCACGTAAGCACCACTAAATCTGCTCTATC
CCCCTCTCGCATTCGTGTGGAAGCCCTGGAAGGCCATCATTTCCGACCAG
GCCGGCAGCCCTTGACGGGGGCCACCGCGCCCTGGAACACGTGTGCGCTC
TGGTCTGTTTCCAAGCTTAGCCTCACAGGCTTCCTCGCCGTCTCGGAGGG
CCTTGCAAGTGACAAGGGTATGggtggcgtggaggaggttgctgTGATTT
GCCTGGCCCAACAATGTTTACAGCCGCGTCCCTCAGTTTCACTGAGCTCT
ATATTTCGATGGAACTTAAAACCCTCAGAAAGTGTACATTCGAAGCGCAA
TGCAGCTGGCATGCGTGCAAAACTTCTGCATTTGCAAGGGCAAATATCCT
GGAAAGTTGATTGGAGCGATCCTGCTCGACAAGAATGGCACCGcaaaaaa
atggaaagcaAGCTTACACGAGCTGGCTCCCAGCTGCGGGCGCTGGGCCT
TGCCCACCCCACGCATGAGGCGTCTGCTGCTACGGCTGTGGTCTGGCACT
TAGAGGTACCACACGTGCTAACTGAAAGTCCAGTGGTCACATGA
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Coding sequence (CDS) from alignment at CM002457.1:626004..627147+

>rna1436 ID=rna1436|Name=rna1436|organism=Nannochloropsis gaditana|type=CDS|length=1890bp|location=Sequence derived from alignment at CM002457.1:626004..627147+ (Nannochloropsis gaditana)
ATGACGACAGTCCGATCCGCGAAAAAGGCCCAAGACACAGTCTTGATTGC
GACTAGAATTCATGGCAGAGAGACCACGGCGGCTCTCTCCTTCGACAGCG
CTAAATTACGGGACTTTTTACATAATACTGTAGCGTACGCTGATGCGGTG
GCGGTTGCTGTCGAGGTGGCAGATCCATTCCATCCCCGACTGCTGGTAGC
TGCGCAAGATGTCGTCAAAGAGTTTAAGGGCTGTCGCATCAACGTCCTGC
CCGTCACACCGTGGGGTCATTTTGTGCCTGCATTAAACGCAGCTCTATCA
TTTGCCATGCAGGAGGACTTCTCATACATCCTGTACCTCTCCTTAGAGAT
GGACCTGACCCCAATGGCTTTCCGTGCGCTCCTTGACAACTTTGACCCGG
CAGAGGATTTAGTTGTTGGCGCTGCCCTGGAAGGCCATCATTTCCGACCA
GGCCGGCAGCCCTTGACGGGGGCCACCGCGCCCTGGAACACGTGTGCGCT
CTGGTCTGTTTCCAAGCTTAGCCTCACAGGCTTCCTCGCCGTCTCGGAGG
GCCTTGCAAGTGACAAGGGTATGggtggcgtggaggaggttgctgTGATT
TGCCTGGCCCAACAATGTTTACAGCCGCGTCCCTCAGTTTCACTGAGCTC
TATATTTCGATGGAACTTAAAACCCTCAGAAAGTGTACATTCGAAGCGCA
ATGCAGCTGGCATGCGTGCAAAACTTCTGCATTTGCAAGGGCAAATATCC
TGGAAAGTTGATTGGAGCGATCCTGCTCGACAAGAATGGCACCGcaaaaa
aatggaaagcaAGCTTACACGAGCTGGCTCCCAGCTGCGGGCGCTGGGCC
TTGCCCACCCCACGCATGAGGCGTCTGCTGCTACGGCTGTGGTCTGGCAC
TTAGAGGTACCACACGTGCTAACTGAAAGTCCAGTGGTCACATGAATGAC
GACAGTCCGATCCGCGAAAAAGGCCCAAGACACAGTCTTGATTGCGACTA
GAATTCATGGCAGAGAGACCACGGCGGCTCTCTCCTTCGACAGCGCTAAA
TTACGGGACTTTTTACATAATACTGTAGCGTACGCTGATGCGGTGGCGGT
TGCTGTCGAGGTGGCAGATCCATTCCATCCCCGACTGCTGGTAGCTGCGC
AAGATGTCGTCAAAGAGTTTAAGGGCTGTCGCATCAACGTCCTGCCCGTC
ACACCGTGGGGTCATTTTGTGCCTGCATTAAACGCAGCTCTATCATTTGC
CATGCAGGAGGACTTCTCATACATCCTGTACCTCTCCTTAGAGATGGACC
TGACCCCAATGGCTTTCCGTGCGCTCCTTGACAACTTTGACCCGGCAGAG
GATTTAGTTGTTGGCGCTGCCCTGGAAGGCCATCATTTCCGACCAGGCCG
GCAGCCCTTGACGGGGGCCACCGCGCCCTGGAACACGTGTGCGCTCTGGT
CTGTTTCCAAGCTTAGCCTCACAGGCTTCCTCGCCGTCTCGGAGGGCCTT
GCAAGTGACAAGGGTATGggtggcgtggaggaggttgctgTGATTTGCCT
GGCCCAACAATGTTTACAGCCGCGTCCCTCAGTTTCACTGAGCTCTATAT
TTCGATGGAACTTAAAACCCTCAGAAAGTGTACATTCGAAGCGCAATGCA
GCTGGCATGCGTGCAAAACTTCTGCATTTGCAAGGGCAAATATCCTGGAA
AGTTGATTGGAGCGATCCTGCTCGACAAGAATGGCACCGcaaaaaaatgg
aaagcaAGCTTACACGAGCTGGCTCCCAGCTGCGGGCGCTGGGCCTTGCC
CACCCCACGCATGAGGCGTCTGCTGCTACGGCTGTGGTCTGGCACTTAGA
GGTACCACACGTGCTAACTGAAAGTCCAGTGGTCACATGA
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Synonyms
Publications