rna1430, rna1430 (mRNA) Nannochloropsis gaditana

Overview
Namerna1430
Unique Namerna1430
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1451
Alignment locationCM002457.1:614884..616411 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100119g6.8004.mrna
Orig protein idgnl|cribi|Naga_100119g6.8004
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:614884..616411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100119g6gene1381Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29246.1cds1428Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1430rna1430-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1430 ID=rna1430|Name=rna1430|organism=Nannochloropsis gaditana|type=mRNA|length=1451bp
CTTCCTGCGGCTGCGTGGTTGCGCTTATCGTCATCAATCTGGGGTTAGGC
GGGCGTCACAGCAGCACCCTACCTTTTTGTCAAACCGAGATTCCCAGATA
CCCTTGCCACGTAATCTTTAAATAGAACATGGCCTAATGTCCAATTTTGC
TTCAAAACACCCCTTGTTGACATTCCCCATCCGAGCAGCAGCACTAGATC
GAGGAGCACTTCAACAGGCACCCGGACAGGATGGGCAGCCAGACAGTGGA
ATCCCCCCGACAGCTGGTGGGTGCAGCCATTCAAGAGTTTTTTGGTGCCC
TTCTCATGTTTTTGGTGCTGTGGCCATTTGTGGGTGTTTTGGGGGACACT
TGGACTGCCTGGGTGGCTCACTTTTTCTTCGTAATGCTGTGCGACATCGT
TTCAGGTGGATCCCAAGTCAATCCCAGCGTGTCAGTGGCTATGTTCGTGC
ATGGAGCCATTTCTTTTCCCGGCGCCATCGTCCGAATCCTTGCACAGCTG
GCAGCGGGCGTGGTCGCCTACCCCCTCCTCCAAAAACTCAGCCCCAGCTA
CGTCGGTGTGGGGGGACCCTGTTTGCAGGACGGCGTCAGCACCACCACTG
GGGCCTTGGCAGAGTTCACCTTGACATTTGCCCTCCTGACGTTGATTTAT
CTCGCCATCACCATCATCGGTGCCCCCGGTCAGCGCCCGATTATTGCAGC
AGGAATTCGGTGCCTTATCGTCGCAGGCACTCCTTACACTGGCCCTGCTA
TGAATCCGATGATTGCCTTCGGATGGGCTGTGCAGAGCGGCGCCTACAAG
ACATTCGACCACTATCTGGTTTATTGGATCGCGCCGACTGTGGGTGCTGT
GTTGGCGACAGTCCTGTTCGCTGTGTTTCAGGCCTCGTTTTTAGACGAAA
GAAAGAAAAACAAAGCGGACTAAGTGTGGTGTGAAAAAGAGTGAGAGAAT
ATTGCGGGTTGAACGCGGCGATGGCGAGCTTTTGAGGACTTCGGGATATA
TCTCGTCACCATCAGAGCCATATTGGCTCAGACCGGCAGCCCAATCGGAG
TGCAATAGCTGCAGGTGGCGCCTGAAAATTCGTTATATATAGAGAGCGTG
ATAAATTTAAATGATGTAAGACGAAAGTCCACCATTGATACGCCAGTATG
TTGATTTTTTTTTTAAACACGTCTGGGGTGAGACTTTCATCTCCGAGAGG
GTTGAATCTTATGTGTCGTTACTGATCCGAAAGAAGGCTCCGAAAGGGTA
GCAGGTCTTTTTTTCCTTTGTAACATAACGAGACTGTGAAATGGTTGTAG
TGCGATGAATTGGGTGAACCAGGTCGAGAGAGCGCGAATGATAGCCTAGG
GACCAGGGGGCAGGGAATGGACGCGCCATAAAAGGTGCAGTGGTGCATTT
CGATGGCAAGGTGCGCAACTTTTTTGCCCTTTCCAGCTTAGCGGCCATTT
T
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protein sequence of rna1430

>rna1430-protein ID=rna1430-protein|Name=rna1430|organism=Nannochloropsis gaditana|type=polypeptide|length=127bp
MDKVEIPVKNDILWTLRSNKYLTDGEYTVNKGRGSRWFLTHNVVELCKMA
AKLERAKKLRTLPSKCTTAPFMARPFPAPWSLGYHSRSLDLVHPIHRTTT
ISQSRYVTKEKKTCYPFGAFFRISNDT
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mRNA from alignment at CM002457.1:614884..616411-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1430 ID=rna1430|Name=rna1430|organism=Nannochloropsis gaditana|type=mRNA|length=1528bp|location=Sequence derived from alignment at CM002457.1:614884..616411- (Nannochloropsis gaditana)
TTTGGCCCTTTCCAACTTGGCGGCCATATTACACAGTTCCACGACTTCAT
TGAGGGTGAGAAAGTGCACACAATGCACCGAAATACCTCAACAGAGCAGG
AGCAATGGAATGTTGGTATCACCGAGGACATGCGTGGGAAGGATGGTGCA
AACCTTGGGCGAGTCGCCGAAGAATGTGACCCTCTTTCCCTTCCTTTATT
CACCGTATATTCATCATCAGCCTTACTACTTCTACGTATCCACAGAATGT
CAAACCGGAATTTCAACATTGTTCATGGCTTCGCCTCATCAGAGGCTGGA
GAGGCAGCTGAGACTGTTGAGGCCATGGAGAAAGTAGAAATTCCAGTTTG
AAATGACATTCTGTGGACATGGAAGTAAATAGTGTTTGGTTATTGGTGAA
TATATGGTAAATAAATAAAGGGCAAAAAGGTGTGCACCTTGCCATCGAGG
TGCAGCATCATACCTTTTCACACCTGCACCTTCGCACCTTCGCACTTTTT
CGAAGGTGCGTGCCTTCCCAGCTGTTGAGGCCACTCGCGCGGAGGACCAT
TACCGCGCAAATGGGATTAACAAATATTCCTTAGAACCCACGGCTATATA
CAAGCACAAGACCCATGTTGCGGAAGAACCCCTTCTGTGACATGACGAAA
AAGATCTCAACGACATCTTCTGCATGAAATGCGATGTCATGATCAGGAAC
GGCGGGCTTTCCCACGTTAGGGACCATCATAGAAGGCACCACGGTCGCTG
CGATGAATCAACGACAGACACCGGTATTGGCTCGGTGCAGCTCAAGATGA
CTGACACGGACCCTTACTCGGCCGAAATACAGGGGCCGTTCCTAATCATG
ACATCGCATTTCAAGCAGAAGATGTCGTTGAGGTGTTTTTATTCTATCGA
CATGTCATAGAGGGGCTTCTTCCGCAACCTATGGGTCTTACGCTTGTCCA
TAGCTGTAGGTTTTCAGGAATATTTGTTAAACCTGTTAACGCGGTAATCG
TCCTCCGCGCGAGTGGCCTCAACACCCCCAGCTGCCTCTCCAGCCTCAGC
TGAGGCTGATGAGGCGAGGCGATGGACAAAGTTGAGATTCCGGTTAAAAA
TGACATTCTGTGGACACTTAGAAGTAACAAGTATTTGACTGATGGTGAAT
ATACGGTGAATAAAGGAAGGGGGTCACGTTGGTTTCTTACCCACAACGTT
GTGGAACTCTGTAAAATGGCCGCTAAGCTGGAAAGGGCAAAAAAGTTGCG
CACCTTGCCATCGAAATGCACCACTGCACCTTTTATGGCGCGTCCATTCC
CTGCCCCCTGGTCCCTAGGCTATCATTCGCGCTCTCTCGACCTGGTTCAC
CCAATTCATCGCACTACAACCATTTCACAGTCTCGTTATGTTACAAAGGA
AAAAAAGACCTGCTACCCTTTCGGAGCCTTCTTTCGGATCAGTAACGACA
CATAAGATTCAACCCTCTCGGAGATGAAAGTCTCACCCCAGACGTGTTTA
AAAAAAAAATCAACATACTGGCGTATCA
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Coding sequence (CDS) from alignment at CM002457.1:614884..616411-

>rna1430 ID=rna1430|Name=rna1430|organism=Nannochloropsis gaditana|type=CDS|length=384bp|location=Sequence derived from alignment at CM002457.1:614884..616411- (Nannochloropsis gaditana)
ATGGACAAAGTTGAGATTCCGGTTAAAAATGACATTCTGTGGACACTTAG
AAGTAACAAGTATTTGACTGATGGTGAATATACGGTGAATAAAGGAAGGG
GGTCACGTTGGTTTCTTACCCACAACGTTGTGGAACTCTGTAAAATGGCC
GCTAAGCTGGAAAGGGCAAAAAAGTTGCGCACCTTGCCATCGAAATGCAC
CACTGCACCTTTTATGGCGCGTCCATTCCCTGCCCCCTGGTCCCTAGGCT
ATCATTCGCGCTCTCTCGACCTGGTTCACCCAATTCATCGCACTACAACC
ATTTCACAGTCTCGTTATGTTACAAAGGAAAAAAAGACCTGCTACCCTTT
CGGAGCCTTCTTTCGGATCAGTAACGACACATAA
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Synonyms
Publications