EWM29246.1, cds1428 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM29246.1
Unique Name	cds1428
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002457.1:614957..615340 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM29246.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100119g6.8004.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:614957..615340 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM29246.1 vs. NCBI_GenBank
Match: gi|585111768|gb|EWM29246.1| (hypothetical protein Naga_100119g6 [Nannochloropsis gaditana])

HSP 1 Score: 267.7 bits (683), Expect = 6.963e-91
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0

Query:    1 MDKVEIPVKNDILWTLRSNKYLTDGEYTVNKGRGSRWFLTHNVVELCKMAAKLERAKKLRTLPSKCTTAPFMARPFPAPWSLGYHSRSLDLVHPIHRTTTISQSRYVTKEKKTCYPFGAFFRISNDT 127
            MDKVEIPVKNDILWTLRSNKYLTDGEYTVNKGRGSRWFLTHNVVELCKMAAKLERAKKLRTLPSKCTTAPFMARPFPAPWSLGYHSRSLDLVHPIHRTTTISQSRYVTKEKKTCYPFGAFFRISNDT
Sbjct:    1 MDKVEIPVKNDILWTLRSNKYLTDGEYTVNKGRGSRWFLTHNVVELCKMAAKLERAKKLRTLPSKCTTAPFMARPFPAPWSLGYHSRSLDLVHPIHRTTTISQSRYVTKEKKTCYPFGAFFRISNDT 127

The following BLAST results are available for this feature:

BLAST of EWM29246.1 vs. NCBI_GenBank

BLAST of EWM29246.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585111768\|gb\|EWM29246.1\|	6.963e-91	100.00	hypothetical protein Naga_100119g6 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna1430	rna1430	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications