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Properties
| Property Name | Value |
|---|
| Product | Ubiquitin |
| Orig transcript id | gnl|cribi|Naga_100013g80.9797.mrna |
| Orig protein id | gnl|cribi|Naga_100013g80.9797 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:368437..370378 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna143 ID=rna143|Name=rna143|organism=Nannochloropsis gaditana|type=mRNA|length=1389bp
ATGTACGTGACGGATTTCTCTTCTTCTTGGTCCTTATCAATACCTGCACG
GACAGGAAAAACGAGACCAACAACGGTCATCACGCGGAAAACTGTGCGTA
ACAGCGCAAGTTCCGGAAGCGGTTGGCTTTCATCCTTGTCTTCGGCCATG
AGAAGCAGTTTCTCTCCAAGGGCTGACGAGAGGACTCCTGGAATCGAACT
GAAAACAGAAGTCTCGGAAGACGTTGGTCTTGAAGACGGGAGTATGACAG
GGCGAGAATCTGAGAAAGAGCGATTGTTAGCGTCCTCCCCCGTTACGGGC
AGTGGCAGCCACAGTACGGATGAGAAAGAAAAGCCTGGAGGAGTTCCATC
CAGGATGCTTCTGAGTGGGAGCACCAGCGGTGACGACAGCATGAAATCGA
AAGCCATTCGTCTCGTGGGCTGCTTTTTAGGCCTTCAAGCCTCTTACATC
ATCTGGGGCCTGGTCCAGGAGCGGATGGTGACCAAGGCGTACGGGGAGGG
CGCTGACGCGGAATTCTTCCCCTCGTCGGCCTTTTTGGTGTTCGGTAACC
GTGCCCTGGCCCTCGTTGTCTCCGCCACAATTGTCTACTGGCCATGGTCG
AATAGGTCCAATACAGACGCGGTGGTACCCCAGGGTTTGAAAGCCCCTTT
GTGGCAGTATGCTCCTGCCTCCCTCTCCAACATTCTGAGCAGCTGGGCTC
AATACGAGGCCCTCAAATACGTCTCCTTCCCCACCCAGGTCCTGTCCAAG
TCCAGCAAGATCATCCCCGTCATGCTCGTTGGGAGGCTGCTGCACCGGAG
GTCCTATCCGTGGGCTGAGTACGTGGACGCCGCGCTGATCACGTTGGGAG
TCACCATCTTCTCTCTGAACGAGAAGAAGCCCAAGGCCGGGCACGACGGC
GGGGCCGACTCCACGTTAGGATACATCCTTCTGGCCATGTATCTCATGTG
CGACTCCTTTACAAGCCAGTGGCAAGACAAAGTCTTCAAGAAGTTCCACG
TGTCCCAATTCCAGATGATGCTGGGGGTCAACCTGTGCTCTATCATCTTT
ACAGGCGCGAGCCTTCTGCAAACCGGGCAAGGCGCTTCGTCACTCGCCTT
CATGATGCGGCACCCGGATGCCGCACAGCATGTCTTCATTCTGTCCCTTT
GCTCTGCCTCGGGACAGCTTTTCATCTTTTACACAATTAAGCAGTTTGGT
GCTATCGTCTTCACCATCATGATGACAATACGTCAGATGCTCAGCATGAT
TTTGTCGTGCGCTTTGTTTGCACACCCGTTGGCATGGCAGAGTTTCATCG
GCGCACTCCTTTGCTTCGGAACTATTGCCCTCCGCATCAAAAGAAACTTG
CGGGGGAAGCAGCGGGCAACAAGTGGAACGGGAAGTTGA back to topprotein sequence of rna143 >rna143-protein ID=rna143-protein|Name=rna143|organism=Nannochloropsis gaditana|type=polypeptide|length=411bp
MSSRQGYRALSEESYDVEALSGLDGQDVPPTTTSTTTTGNATTASTSATS
PSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLST
IGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFAR
PPPPPPGAPGSIASVVNPTSGAGTEGGMVGPGTHLNPYGLPSSFGDPELI
RSTHSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAGGGGEVPAPGDEDG
GGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQ
LQSTKVYVYGLLVVGTAWMASRIIWAVNSVNLGYDVDVGPQPSASSPPPG
AGNGTDDGGGGGGEAYQQMDRGELIYMVSLSCFLYSLVWGVCFMRASQFY
TLVRRANGLGP back to topmRNA from alignment at CM002455.1:368437..370378- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna143 ID=rna143|Name=rna143|organism=Nannochloropsis gaditana|type=mRNA|length=1942bp|location=Sequence derived from alignment at CM002455.1:368437..370378- (Nannochloropsis gaditana)
CTCCCCCACAAACATACGCGCCCAACCGTCTTTCACACGTCTCATACACC
ACCGCCGTCTCAAATGAAGGGGAAAATTTCTCACGTTTCGCCTATTCCAC
ATGTTCAGGTCGCGTGCTTTGCGTTGGGGTCGTCGTCCTCAAGCGTAGGA
GGAGCTGCCGCCTTTGTCTAAGAAACTTTGGTTGTACTCCTAAGAGGACG
AGACACGCGTGTACAGTGTGGGACACAAAAGACTGAATCACGACGACTTG
TAGCTTTCTTGGGACGAGGATGTCATCCCGGCAGGGATACCGAGCATTGA
GTGAGGAAAGCTACGATGTAGAGGCCCTTAGCGGCTTAGACGGTCAAGGT
ATGACTTTCGGGACTGGCAATAGGTGGAGGAATAGGGTGAAAGAAAGCGT
ACGGGGGACTCCACAGAGAGGAACGGCCAACGGACGACGAGACACGTGCT
AATCTGTCTCTGCTCCCTTTCATATGCCAACCAAAGCAGATGTCCCTCCC
ACGACCACATCCACCACCACCACCGGAAACGCCACTACTGCCTCCACGTC
TGCCACTTCTCCGTCGCTTTCTGCCCCCCTTCCAAGATCATCTCCAGTTT
CCCCGCCTGCTCCCTCCCCAGGGCCTAGTGGACCCCCTCAGTTTCCCATA
CGCATTTTAGACACGCACGGGAAAGAGCATGCCCTGGATGCCGAGAGCCC
CTTGTCAACCATCGGCACACTCAAAGTCAAAGTGCAGGCAGCATCCGGTG
TATCACCTGCACAGCAGCGTTTGATATTCGCCGGGCGAATGTTGCAAGAC
CAGCAGACGCTTCGGTCGTGCGGGGTGGAGGCGGGCTGCGTGATCCATTT
GTTCGCGCGCCCCCCACCCCCGCCCCCCGGTGCCCCGGGCAGCATCGCCA
GCGTCGTCAACCCTACAAGCGGAGCTGGGACTGAGGGAGGGATGGTGGGT
CCGGGCACGCACTTGAACCCGTACGGCCTGCCGTCCTCCTTTGGAGACCC
GGAGTTGATCCGGTCCACCCACTCGGTCAAACTCTTCTCCTCTTGTTTGG
TGGCAATATGTGCCATGCAATTGTTGTTGCTGGGGCTGCAGATGCTTGCG
GCTTGGTCTATGGGTGCGGGAGGGGGAGGAGAGGTGCCTGCGCCTGGTGA
TGAGGACGGAGGAGGCGGGGAGCCCGGGGCCAAGGGCGCGGGAGGTAAAG
GGGGCGGGGGAGTGGACGGGGGCAGCGCTCTCTTAATCCTGCAGGTGATG
ATGAACACCTTGGGTCTATACGTGGGCCTGGTCGGTATCCGGAGCGCCAA
CACTCTCCAGCTGCAATCGACCAAGGTGTACGTGTACGGCTTGCTGGTGG
TGGGCACCGCCTGGATGGCCAGTCGGATTATATGGGCCGTGAATAGTGTG
AACCTCGGGTATGACGTGGACGTCGGCCCCCAGCCCTCCGCGTCCTCTCC
GCCCCCCGGCGCAGGAAACGGCACGGATGACGGAGGCGGGGGAGGCGGGG
AGGCGTATCAGCAGATGGACCGAGGGGAACTGATCTACATGGTGTCCCTG
TCGTGTTTCCTGTACAGCTTGGTGTGGGGCGTCTGCTTCATGAGAGCCAG
TCAGTTTTATACACTGGTGCGCAGGGCGAACGGGCTGGGACCATAGGGTA
GAGGGGCGTGCAGGCACAGGATTAAGGGATGTACATTGAGGCGGGAACTA
GAAGGGGGGTGACGATAGCGGAAACCAGGCGACTGGCTTCGCACGCAAAG
ACAGCTGCAGGCTTGTGAATTACATGCATCTGAGACTAAGGTTGTGGTCA
TACAAAGGAGTGCACGTTCATGAGGTCCAACGTCGGAATGGGCCCACGCA
GAGGGTCATAGATGTCGGATAGGCCATCTCCTTTTACCCTGTGGGATTTG
GGGGCAAACATAGAACAAGACATCTCGGAGACACTTTGTCCT back to topCoding sequence (CDS) from alignment at CM002455.1:368437..370378- >rna143 ID=rna143|Name=rna143|organism=Nannochloropsis gaditana|type=CDS|length=2472bp|location=Sequence derived from alignment at CM002455.1:368437..370378- (Nannochloropsis gaditana)
ATGTCCCTCCCACGACCACATCCACCACCACCACCGGAAACGCCACTACT
GCCTCCACGTCTGCCACTTCTCCGTCGCTTTCTGCCCCCCTTCCAAGATC
ATCTCCAGTTTCCCCGCCTGCTCCCTCCCCAGGGCCTAGTGGACCCCCTC
AGTTTCCCATACGCATTTTAGACACGCACGGGAAAGAGCATGCCCTGGAT
GCCGAGAGCCCCTTGTCAACCATCGGCACACTCAAAGTCAAAGTGCAGGC
AGCATCCGGTGTATCACCTGCACAGCAGCGTTTGATATTCGCCGGGCGAA
TGTTGCAAGACCAGCAGACGCTTCGGTCGTGCGGGGTGGAGGCGGGCTGC
GTGATCCATTTGTTCGCGCGCCCCCCACCCCCGCCCCCCGGTGCCCCGGG
CAGCATCGCCAGCGTCGTCAACCCTACAAGCGGAGCTGGGACTGAGGGAG
GGATGGTGGGTCCGGGCACGCACTTGAACCCGTACGGCCTGCCGTCCTCC
TTTGGAGACCCGGAGTTGATCCGGTCCACCCACTCGGTCAAACTCTTCTC
CTCTTGTTTGGTGGCAATATGTGCCATGCAATTGTTGTTGCTGGGGCTGC
AGATGCTTGCGGCTTGGTCTATGGGTGCGGGAGGGGGAGGAGAGGTGCCT
GCGCCTGGTGATGAGGACGGAGGAGGCGGGGAGCCCGGGGCCAAGGGCGC
GGGAGGTAAAGGGGGCGGGGGAGTGGACGGGGGCAGCGCTCTCTTAATCC
TGCAGGTGATGATGAACACCTTGGGTCTATACGTGGGCCTGGTCGGTATC
CGGAGCGCCAACACTCTCCAGCTGCAATCGACCAAGGTGTACGTGTACGG
CTTGCTGGTGGTGGGCACCGCCTGGATGGCCAGTCGGATTATATGGGCCG
TGAATAGTGTGAACCTCGGGTATGACGTGGACGTCGGCCCCCAGCCCTCC
GCGTCCTCTCCGCCCCCCGGCGCAGGAAACGGCACGGATGACGGAGGCGG
GGGAGGCGGGGAGGCGTATCAGCAGATGGACCGAGGGGAACTGATCTACA
TGGTGTCCCTGTCGTGTTTCCTGTACAGCTTGGTGTGGGGCGTCTGCTTC
ATGAGAGCCAGTCAGTTTTATACACTGGTGCGCAGGGCGAACGGGCTGGG
ACCATAGATGTCATCCCGGCAGGGATACCGAGCATTGAGTGAGGAAAGCT
ACGATGTAGAGGCCCTTAGCGGCTTAGACGGTCAAGATGTCCCTCCCACG
ACCACATCCACCACCACCACCGGAAACGCCACTACTGCCTCCACGTCTGC
CACTTCTCCGTCGCTTTCTGCCCCCCTTCCAAGATCATCTCCAGTTTCCC
CGCCTGCTCCCTCCCCAGGGCCTAGTGGACCCCCTCAGTTTCCCATACGC
ATTTTAGACACGCACGGGAAAGAGCATGCCCTGGATGCCGAGAGCCCCTT
GTCAACCATCGGCACACTCAAAGTCAAAGTGCAGGCAGCATCCGGTGTAT
CACCTGCACAGCAGCGTTTGATATTCGCCGGGCGAATGTTGCAAGACCAG
CAGACGCTTCGGTCGTGCGGGGTGGAGGCGGGCTGCGTGATCCATTTGTT
CGCGCGCCCCCCACCCCCGCCCCCCGGTGCCCCGGGCAGCATCGCCAGCG
TCGTCAACCCTACAAGCGGAGCTGGGACTGAGGGAGGGATGGTGGGTCCG
GGCACGCACTTGAACCCGTACGGCCTGCCGTCCTCCTTTGGAGACCCGGA
GTTGATCCGGTCCACCCACTCGGTCAAACTCTTCTCCTCTTGTTTGGTGG
CAATATGTGCCATGCAATTGTTGTTGCTGGGGCTGCAGATGCTTGCGGCT
TGGTCTATGGGTGCGGGAGGGGGAGGAGAGGTGCCTGCGCCTGGTGATGA
GGACGGAGGAGGCGGGGAGCCCGGGGCCAAGGGCGCGGGAGGTAAAGGGG
GCGGGGGAGTGGACGGGGGCAGCGCTCTCTTAATCCTGCAGGTGATGATG
AACACCTTGGGTCTATACGTGGGCCTGGTCGGTATCCGGAGCGCCAACAC
TCTCCAGCTGCAATCGACCAAGGTGTACGTGTACGGCTTGCTGGTGGTGG
GCACCGCCTGGATGGCCAGTCGGATTATATGGGCCGTGAATAGTGTGAAC
CTCGGGTATGACGTGGACGTCGGCCCCCAGCCCTCCGCGTCCTCTCCGCC
CCCCGGCGCAGGAAACGGCACGGATGACGGAGGCGGGGGAGGCGGGGAGG
CGTATCAGCAGATGGACCGAGGGGAACTGATCTACATGGTGTCCCTGTCG
TGTTTCCTGTACAGCTTGGTGTGGGGCGTCTGCTTCATGAGAGCCAGTCA
GTTTTATACACTGGTGCGCAGGGCGAACGGGCTGGGACCATAGATGTCAT
CCCGGCAGGGATACCGAGCATTGAGTGAGGAAAGCTACGATGTAGAGGCC
CTTAGCGGCTTAGACGGTCAAG back to top
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