EWM30509.1, cds143 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30509.1 vs. NCBI_GenBank
Match: gi|585113173|gb|EWM30509.1| (Ubiquitin [Nannochloropsis gaditana]) HSP 1 Score: 816.609 bits (2108), Expect = 0.000e+0 Identity = 411/411 (100.00%), Postives = 411/411 (100.00%), Query Frame = 0
Query: 1 MSSRQGYRALSEESYDVEALSGLDGQDVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFARPPPPPPGAPGSIASVVNPTSGAGTEGGMVGPGTHLNPYGLPSSFGDPELIRSTHSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMASRIIWAVNSVNLGYDVDVGPQPSASSPPPGAGNGTDDGGGGGGEAYQQMDRGELIYMVSLSCFLYSLVWGVCFMRASQFYTLVRRANGLGP 411
MSSRQGYRALSEESYDVEALSGLDGQDVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFARPPPPPPGAPGSIASVVNPTSGAGTEGGMVGPGTHLNPYGLPSSFGDPELIRSTHSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMASRIIWAVNSVNLGYDVDVGPQPSASSPPPGAGNGTDDGGGGGGEAYQQMDRGELIYMVSLSCFLYSLVWGVCFMRASQFYTLVRRANGLGP
Sbjct: 1 MSSRQGYRALSEESYDVEALSGLDGQDVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFARPPPPPPGAPGSIASVVNPTSGAGTEGGMVGPGTHLNPYGLPSSFGDPELIRSTHSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMASRIIWAVNSVNLGYDVDVGPQPSASSPPPGAGNGTDDGGGGGGEAYQQMDRGELIYMVSLSCFLYSLVWGVCFMRASQFYTLVRRANGLGP 411
BLAST of EWM30509.1 vs. NCBI_GenBank
Match: gi|585113172|gb|EWM30508.1| (Ubiquitin [Nannochloropsis gaditana]) HSP 1 Score: 811.601 bits (2095), Expect = 0.000e+0 Identity = 411/412 (99.76%), Postives = 411/412 (99.76%), Query Frame = 0
Query: 1 MSSRQGYRALSEESYDVEALSGLDGQ-DVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFARPPPPPPGAPGSIASVVNPTSGAGTEGGMVGPGTHLNPYGLPSSFGDPELIRSTHSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMASRIIWAVNSVNLGYDVDVGPQPSASSPPPGAGNGTDDGGGGGGEAYQQMDRGELIYMVSLSCFLYSLVWGVCFMRASQFYTLVRRANGLGP 411
MSSRQGYRALSEESYDVEALSGLDGQ DVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFARPPPPPPGAPGSIASVVNPTSGAGTEGGMVGPGTHLNPYGLPSSFGDPELIRSTHSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMASRIIWAVNSVNLGYDVDVGPQPSASSPPPGAGNGTDDGGGGGGEAYQQMDRGELIYMVSLSCFLYSLVWGVCFMRASQFYTLVRRANGLGP
Sbjct: 1 MSSRQGYRALSEESYDVEALSGLDGQADVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFARPPPPPPGAPGSIASVVNPTSGAGTEGGMVGPGTHLNPYGLPSSFGDPELIRSTHSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMASRIIWAVNSVNLGYDVDVGPQPSASSPPPGAGNGTDDGGGGGGEAYQQMDRGELIYMVSLSCFLYSLVWGVCFMRASQFYTLVRRANGLGP 412
BLAST of EWM30509.1 vs. NCBI_GenBank
Match: gi|553179171|ref|XP_005852660.1| (hypothetical protein NGA_0699500, partial [Nannochloropsis gaditana CCMP526] >gi|422295872|gb|EKU23171.1| hypothetical protein NGA_0699500, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 283.878 bits (725), Expect = 1.615e-92 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query: 1 MSSRQGYRALSEESYDVEALSGLDGQDVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGC 143
MSSRQGYRALSEESYDVEALSGLDGQDVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGC
Sbjct: 1 MSSRQGYRALSEESYDVEALSGLDGQDVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGC 143
BLAST of EWM30509.1 vs. NCBI_GenBank
Match: gi|1173935267|gb|OQR86411.1| (ubiquitin family protein [Achlya hypogyna]) HSP 1 Score: 82.8037 bits (203), Expect = 2.806e-13 Identity = 79/297 (26.60%), Postives = 124/297 (41.75%), Query Frame = 0
Query: 43 TASTSATSPSLSAPLPRSSPVSPP-------APSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFAR---PPPPPPGAPGSIASVVNPTSGAGTEGGMV--GPGTHLNPYGLPSSFG---DPELIRS-----THSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGG---VDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGT 316
+++ A P+ + PR++PV P A P IRILD +GK + A +P+ + TLK V+ SGV +QRLI+ GR+L+D+ TL +E G +HLF R PP P A S ++ PT + G + PS DP ++ S VKL++S ++ I M+LL GE + + + K D S + ++ G+YVG VG ++A+ L+ + YV G+ V+
Sbjct: 56 SSADEAQMPAATISSPRAAPVPPVQENEAEVALDPLEDASGNLRIRILDLNGKVFDIHA-APVWPVATLKSVVRNKSGVEEGRQRLIYRGRVLEDEMTLGDAKLEDGHTVHLFVRQVAAPPEPDFAATSSSAAPVPTFNFDDHAHQIHFGANETITSAVFPSESARRMDPLMLDSPLGIAARRVKLWASFILIINTMKLL-----------------GEFAFLANLRAMHAQRNVDESIEKMYKYSPLYDSNSYVTAAKLFSYAWGVYVGCVGFKAAHDTDLRPIRTYVTGIAVLAV 334
BLAST of EWM30509.1 vs. NCBI_GenBank
Match: gi|695374188|ref|XP_009515233.1| (hypothetical protein PHYSODRAFT_468224 [Phytophthora sojae] >gi|348688144|gb|EGZ27958.1| hypothetical protein PHYSODRAFT_468224 [Phytophthora sojae]) HSP 1 Score: 80.1073 bits (196), Expect = 9.820e-13 Identity = 76/267 (28.46%), Postives = 116/267 (43.45%), Query Frame = 0
Query: 73 SGPPQFPIRILDTHGKEHALDAESPLS-TIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFARPPPPPPGAPGSIASVVNPTSGAGTEGGMVGPGTHLNPYGLPSSFG--------DPELIRS-----THSVKLFSSCLVAICAMQL-----LLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMA 320
+ P +RILD +GK D L T+ +K KV ++ V+ A QRLI+ GR+L+D+ +L S VE G IHLF R P P + N +S G + G+ H+N + S+ DP ++ S VKL+SS L+ I M++ LL Q A G G D P GG L++M++ G+YVG VG ++A+ ++ + Y G++ W+A
Sbjct: 65 ADPDAIHVRILDLNGK--FFDVACKLDWTVAHMKQKVLESTEVAVASQRLIYRGRVLEDENSLASYKVEDGHTIHLFVRAAPTPDPEILNAELNANGSSSGGRDDGIT--VVHINSDIVSSAVFPSDSARRVDPLMLDSPLGNCARRVKLWSSFLLIIYTMKVMGQFALLANDQQQRAAQQEREGAGASETDRPMDRYDEYPQYYTPDPLIGG----------LELMVHCFGVYVGCVGFKAAHDTDIRPIRFYCRGVV-----WLA 312
BLAST of EWM30509.1 vs. NCBI_GenBank
Match: gi|219115045|ref|XP_002178318.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410053|gb|EEC49983.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 79.337 bits (194), Expect = 1.969e-12 Identity = 90/355 (25.35%), Postives = 151/355 (42.54%), Query Frame = 0
Query: 77 QFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGV-EAGCVIHLFARPP---PPPPGAPG--SIASVVNPTSGAGTEGGMVGPGTHLNPYGLPSS----------FGDPELIRSTHSVKLFSSCLVAICAMQLL-LLGL-------QMLAAWSMGAGGG--GEVPAPGDEDGGGGEPGAKGAG-----GKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMASRIIWAVNSVNLGYDVDVGPQPSASSPPPGAGNGTDDGGGGGGEAYQQMDRGELIYMVSLSCFLYSLVWGVCFMRASQFY 400
+ + ILD K+ + A S +T+ LK V ++QRLIF G++L D L + G+ E G ++HLF +P A G ++ S N + + TE H+ L ++ G E I + ++VKLFS L+ I ++LL LL + Q A++ +G G +P + + +P + + G S + + ++ LG+YV ++G+R++N L+ K Y+YG ++ G WMA + YD D Q +A D E+ +++ L MV L +VW +C RA QF+
Sbjct: 103 RINVVILDYTQKKFNV-AVSSSTTVAVLKQNGAIVHKVPASRQRLIFRGQLLADTTLLANAGIKEDGVIVHLFPKPRVVIQDSNAASGGNALNSDANAENSSQTEDA---DAAHVPTIFLETTEAERRSQILVLGSVEFIETQNNVKLFSFMLLIISCIELLNLLAIALGVPQDQDEASYPVGEEDDILGPLPPSLETNDAWSQPSSNSSDTGSDTNTAGVTYTDWSGANWVDLAVSVLGVYVAMLGLRASNENTLRLAKRYLYGTVLAGVGWMALNYF-------MTYDKD--KQYAAERASHHT-----DTDFVPIESTRELLEAALSVMV-----LPGMVWMLCVYRAWQFH 434
BLAST of EWM30509.1 vs. NCBI_GenBank
Match: gi|1214713201|gb|OWZ24104.1| (Ubiquitin family protein [Phytophthora megakarya]) HSP 1 Score: 78.1814 bits (191), Expect = 3.336e-12 Identity = 85/341 (24.93%), Postives = 137/341 (40.18%), Query Frame = 0
Query: 10 LSEESYDVEALSGLDGQDVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFAR-PPPPPPGAPGSIASVVNPTSGAGTEGGMV---------------GPGTHLNPYGLPSSFGDPELIRSTHSVKLFSSCLVAICAMQ------LLLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMASRIIWAVN 328
+ +S++ EA + + Q T T+ + T T+ ++ P P A P +RILD +GK + T+ +K KVQ ++ V+ QRLI+ GR+L+D +L S VE G IHLF R P P P + + +SGA +G V ++P L S G+ VKL+SS L+ I M+ LL Q AA G G P + P GG ++++++ G+YVG VG ++A+ ++ + Y G++ + +A +I V
Sbjct: 1 MRSDSHEGEAEADAETQRPHEETAQEDTSEDTQTPKTTQEDTKDTSEDPSQQPDDEDA------DPEAIHVRILDLNGKFFNITCRLDW-TVAHMKQKVQESTEVAVPSQRLIYRGRVLEDDNSLDSYKVEDGHTIHLFVRAAPTPDPEILNAELNANGSSSGAREDGITVVNINSDIVSSAVFPSDSARRVDPLMLDSPLGN-----CARRVKLWSSFLLIIYTMKVMGQFALLANDQQQRAAQQEREGTGASETDPRPMERYDEYPQFYTPDPLIGG----------IELLVHCFGVYVGCVGFKAAHDTDIRPIRFYCRGVVWLAILTVAEQIYTTVQ 319
BLAST of EWM30509.1 vs. NCBI_GenBank
Match: gi|813148982|ref|XP_012200138.1| (hypothetical protein SPRG_19911 [Saprolegnia parasitica CBS 223.65] >gi|641535327|gb|KDO29245.1| hypothetical protein SPRG_19911 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 78.5666 bits (192), Expect = 3.429e-12 Identity = 86/318 (27.04%), Postives = 131/318 (41.19%), Query Frame = 0
Query: 24 DGQDVPPTTTSTTTTGNATT------ASTSATSPSLSAPLPRSSPVSP-----PAPSPGPSGPPQFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFAR----PPPPPPGAPGSIASVVNPTSGAGTEGGMVGPGTH--LNPYGLPSSFG---DPELIRS-----THSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGT 316
D P T + AT+ +S T ++S+P +PV P PA P IRILD +GK + A + +G LK V+ SGV ++QRLI+ GR+L D+ TL +E G +HLF R PP P + S +SV PT + G + + PS DP ++ S VKL++S ++ I M+ LLG A V A ++ K DG S + ++ G+YVG VG ++A+ L+ + Y G+ ++
Sbjct: 33 DDHATPIEATVLVSDARATSPRLRRRSSADDTHATVSSPRAAPAPVEPSHHDAPALDPLEDVGGNLRIRILDLNGKVFDIHASAEWP-VGQLKAVVRNKSGVDESRQRLIYRGRVLDDEGTLSEYKLEDGHTVHLFVRQVATPPEPEAASQASASSVPPPTFSFDDHHHQIHFGANETITSAVFPSESARRLDPLMLDSPLGIAARRVKLWASFILIINTMK--LLGEFAFLANMRAMHAQRNVDANIEK------------MYKYSPLYDGNSYVTAAKLFSYAWGVYVGCVGFKAAHDTDLRPIRTYCSGIAILAV 335
BLAST of EWM30509.1 vs. NCBI_GenBank
Match: gi|1173944063|gb|OQR92840.1| (regulator of chromosome condensation (RCC1) [Thraustotheca clavata]) HSP 1 Score: 75.485 bits (184), Expect = 6.223e-11 Identity = 86/329 (26.14%), Postives = 131/329 (39.82%), Query Frame = 0
Query: 8 RALSEESYDVEALSGLDGQDVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPPQ--FPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFARPPPPPPGAPGSIASVVNPTSGAGTEGGMVGPGTHLNPYG---------LPSSFG---DPELIRS-----THSVKLFSSCLVAICAMQLL--LLGLQMLAAWSMGAGGGGEVPAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVG 315
R +E+ V S + D P + A A + +SP ++ P + V+P P+ P IRILD +GK + S S + LK VQ S V A+QRLI+ GR+L+DQ TL +E G +HLF R PP + AS ++ + E P H +G PS DP ++ S VKL++S ++ I M+LL L L A G + K D S + ++ G+YVG VG ++A+ L+ + Y G++ +
Sbjct: 411 REHEDEADRVNDESRVLVADSRPNSPRLRRRNTAEEAQATISSPRVTEP-EETITVAPTVPALDPLEDEHGNLHIRILDLNGKVFDVHGASDWS-VARLKTVVQHKSNVDEARQRLIYRGRVLEDQLTLGEYKLEDGHTVHLFVRQVATPPEPEAASASA---SNPSSREFNFDDPHVHHIHFGTNETITSAVFPSESARRMDPLMLDSPLGIAARRVKLWASFILIINTMKLLGEFAFLANLRAMHSQHNVDGNIEKM----------------YKYSPLYDSNSYVTACKLFSYAWGVYVGCVGFKAAHDTDLRPIRTYCTGIVFLA 718
BLAST of EWM30509.1 vs. NCBI_GenBank
Match: gi|514695559|ref|XP_004995350.1| (neural cell expressed [Salpingoeca rosetta] >gi|326437416|gb|EGD82986.1| neural cell expressed [Salpingoeca rosetta]) HSP 1 Score: 64.6994 bits (156), Expect = 9.979e-10 Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 0
Query: 80 IRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHL 147
I++ G+E LD E P T+ +K K++ G+ P QQRLI+AG+ L D +TL+ C +E+GC IHL
Sbjct: 3 IKVKTLTGREIELDVE-PDDTMLQVKEKLEEKQGIPPEQQRLIYAGKPLNDSKTLKDCKIESGCTIHL 69 The following BLAST results are available for this feature:
BLAST of EWM30509.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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