rna1412, rna1412 (mRNA) Nannochloropsis gaditana

Overview
Namerna1412
Unique Namerna1412
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1812
Alignment locationCM002457.1:574353..575827 -

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Properties
Property NameValue
ProductUBA-like protein
Orig transcript idgnl|cribi|Naga_100029g13.9511.mrna
Orig protein idgnl|cribi|Naga_100029g13.9511
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:574353..575827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100029g13gene1363Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1412rna1412-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29254.1cds1410Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1412 ID=rna1412|Name=rna1412|organism=Nannochloropsis gaditana|type=mRNA|length=1812bp
GGGAACAATCACACAACTTAAAGGACAGCCATAGGGCAATTCATGCGGGC
GGCGCTTTCTTTGTCCCACAAATTGCGTGATGCTCGCCTCCACTCCGTTG
CCCTCTCCACCGCTCCGTCCGCAACTATCGCCTTTGCCTATGCCCAAGAC
ACTTCGCCCCGCAGCCGCCCTTGCTGCATGAGGCGGCCTCCTCGGACCCG
GCAAGATGCGCGACGGTGCTTTCGTGCGACGTGCCGGAGGGAGAATCCTG
TGCTCATCGGTATTGGTATACTTGTAGGGGCGACACTTGCCCATTACCTA
GTACGGGCGGCGCAACGGATAGCCAAGGCAGACAAGAAAAAGAGAGAAGG
CAAAGAGGTCACTGACGACGAGGAGGAGGAGAGGGATCACGAGGAAAGTG
AAGGGCGAGAGGAAGCGGGCGCGAACGTCAGGCGTGAGTTTCCGGTCCTG
GGACTAGACCTGGGATCTTCGCAGGCATGCGTGGCTTTCGTGGCTGCGAA
AGAACGAGCGCCAGAGGTGGTGGAGAATCATGAAGGCCGACGGTCTACTC
CTGCGTTCATATCCTATGAAGATGATCACCTGGTGGTAGGACAGCTGGCT
CGCCGAGCACGATGGAGGGAGCCCGCGAAGGTGGGCTTCAACATCCAGCG
CCTGCTGGGCCTGGCCGCTTACGAGGACAAAGTCCGGCCTTTGTTCCCCT
TCGCCGTCGACGCCAGGGAAGGATCTGCGGACGGGGACCTCTCTCCGTTG
GTCATGAGGCTCAAGGGGGGGCGAGCCCTGACGCCCCTGGAAGCGAGCGC
GCGGGTCCTTGAGGAGCTCGTGCAGTCCGCGGAGCACAAACTGCACACCA
CCCCGGGTTTCGCCATCCTCGCAGTCCCCTCCTACTTCGATGAAGGGGCG
AAGCGTCGGGCGCTGAAGGCGGCCGCCGATGCGACGGGTCTGAGCGTTGG
GGCGGACGAGGGGCAGGGCGGGGGCCTGGCGGTGGTGGAGGACGCGGTGG
CAGCCCTGGTCTGCGCCCACTACTCGGGGGCCGTCTCGGACGAAGAGGCC
TTCTTCGGGAAGCCCTGGCTGGTGCTGGATGTGGGGGGCCTGAACGCGCA
GGCCTCGGTGGTGGCCATGGACCCCCAGCAGGGGCTGGGCGTGCGGGCCA
ACAGGACGACGTGGGCTGTGGGCGGGGAGCAGCTAGACGGGGTGCTGGTG
CAGCACCTCATCTCCGACTTCAAGGAGAAGCACGGCGGCCTGGACCTAGG
CACGGACTATCTGGCGCTCGAGCGCTTGCATGAGGCGGCGGAGGCGAGCA
AGCAGGAGCTGAGTCTGAGCCCGTCCTCGACCCTGCGTCTCCCCTTCATC
ACCGCCGACCACCGGGGGCCGAAGCACCTGGACGCGACCGTATCCAGGGC
CGCCCTGGAGCGACTAGCGCTGCCTGTCTTGGACCAGTTGGAAGCGCCCG
TGGTGGAGGCATTGCGGGCGTCGGGGGTGGGTCTGGAGGGCTTGCAAGGC
GTGCTGCTGGCGGGGGGCACGGCCCGCTTGCCTTTCCTGGGGGAATTCGT
GCGGAGCCGGCTCACACTGGGGAAGGTGAAGGTGCTGAGCGTGGAGGGTG
TACCGCCTGAGGAGGTGGCGGCGGTGGGCGCGGCTTATTACGGGCGACAG
CTCGTCGAATAATGCGTCTGGTACTGGTCAAAAGTGGGTGGCTGAAAGTA
CACACTTGAAAAAGAGCAGCCGTCTTCTTGAAACCTTTCCGAAATGCTTT
GCCTTTGTTGTCACGCATTCTGCTGCCTATTCACATGCTTCTCGCCACTC
GCCGCACTCTCT
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protein sequence of rna1412

>rna1412-protein ID=rna1412-protein|Name=rna1412|organism=Nannochloropsis gaditana|type=polypeptide|length=138bp
MAHYPTLAYSTFKVDANGLPADLRVLPELDTTLPPAHDFELEEKVVKAYE
DSQAAAERLVAQEASPVVTKPNGEDVSTPTSTITGGLGDLSLVAGDPEKK
TKMARMKELTKADDKTCLFYLDSYSWDLQRACQEYFSK
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mRNA from alignment at CM002457.1:574353..575827-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1412 ID=rna1412|Name=rna1412|organism=Nannochloropsis gaditana|type=mRNA|length=1475bp|location=Sequence derived from alignment at CM002457.1:574353..575827- (Nannochloropsis gaditana)
AAATGCAACATGCATCAGTGCATTGATTATATATTGCAAATGAGTTAAAG
TGACCGGAAATTCGCTCTCAAAATAAGTGGGACTGATCTCATCGAACGTA
CATTGCTACATAAATTCATGTGGACAAGCACGCAACCGCGGGGGAGGGAT
CACGGGGCTGTAAGGAATGGCGTAGAGCGACGTCACGCTGGGCCCCGGGC
ACTCGGGATAAGCACCATCTCACGCGGGTGGCCGCGCGCAGTGGCGCATC
CTCTTGGTGCGCACTAACGCACGCATCCACGGTCAAGTGTGAACAGCTTA
AAATGCATGGCAGCCATTCGTCTTCCAAGGCTCGCTTAATTATTGCCTTA
TAAAATTCACTCGCACACTTCTTCACCTGAGTAGCCTCGCGAGCCCAATT
TTCGTGCGAAATGGCACACTACCCTACTTTGGCGTATTCGACGTTCAAAG
TCGACGCAAATGGTTTGCCTGCCGATCTGCGGGTACTACCGGAACTGGAT
GTGAGTAGATCGGGGAGTCGGACAAGAGCTAGTTTGGGAAGAATACGTGT
CCTATGAAGTCCTTTTTGCCTGTCTTCTTGATCTCTTTTCGTCATAATGT
GTACGAGTCGTGTTCGTGCTGGCTTTACGAGATACGTTCAAGGCGGGCAT
GGCAAATCGCCTGTCTTCAAATACGGAGAGGCGTCAATCGAGTTTAACCT
CATGTCCTATCCACGCTTCATCACAGACAACCTTGCCGCCCGCTCACGAT
TTTGAGCTGGAAGAGAAGGTGAGACGCAGTGTCGTTTGTTAAGGCATTTC
CTACGAAGCACGTCGTAGAAACCCCCCTTTATGAGCTGGCAATGTGTAAT
ATTCACAACGTCCCTTCTTCCCATGCTCAAGGTTGTGAAGGCTTACGAGG
ACTCCCAAGCTGCTGCCGAGAGGCTCGTCGCCCAAGAGGCCTCTCCGGTT
GTGTACGTTTTCTCTATGTTTTCGGAAGGAGAGACGAATGCGATTTCATC
AAAACTTGTTTTGATATGTGTACTCGTATTCTGACCTCATTTTTTTAACA
TGCACAGAACAAAGCCCAACGGCGAAGACGTTTCCACGCCCACTTCGACC
ATCACGGTACGTGCCGTAGTATATATTTTTCGCTTATCTGGGTCATGGAA
TATCGTTGTAGACCCTGGATGCTCTTTCCCTTATTTAAATGAACATTTTT
AGGGTGGTCTTGGCGATTTGAGCCTCGTCGCAGGCGACCCGGAGAAGAAG
ACGAAAATGGCTAGAATGAAGGAGTTAACGAAAGCAGATGATAAAACGTG
CCTGTTTTACCTTGATTCATACTCGTGGGACCTTCAACGGGCTTGTCAAG
AATATTTCAGTAAATGATGCGCGCTGTTTGTAGGGATAACCTCCTACCTC
CGTGTTTACGGCCAACTGTAGTACTTGGAAAAAAAAAAACAATGTGAAGA
AGGACGACGAAAAGAGTCTCGATGC
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Coding sequence (CDS) from alignment at CM002457.1:574353..575827-

>rna1412 ID=rna1412|Name=rna1412|organism=Nannochloropsis gaditana|type=CDS|length=2085bp|location=Sequence derived from alignment at CM002457.1:574353..575827- (Nannochloropsis gaditana)
GGTGGTCTTGGCGATTTGAGCCTCGTCGCAGGCGACCCGGAGAAGAAGAC
GAAAATGGCTAGAATGAAGGAGTTAACGAAAGCAGATGATAAAACGTGCC
TGTTTTACCTTGATTCATACTCGTGGGACCTTCAACGGGCTTGTCAAGAA
TATTTCAGTAAATGAAACAAAGCCCAACGGCGAAGACGTTTCCACGCCCA
CTTCGACCATCACGGTTGTGAAGGCTTACGAGGACTCCCAAGCTGCTGCC
GAGAGGCTCGTCGCCCAAGAGGCCTCTCCGGTTGTACAACCTTGCCGCCC
GCTCACGATTTTGAGCTGGAAGAGAAGATGGCACACTACCCTACTTTGGC
GTATTCGACGTTCAAAGTCGACGCAAATGGTTTGCCTGCCGATCTGCGGG
TACTACCGGAACTGGATGGTGGTCTTGGCGATTTGAGCCTCGTCGCAGGC
GACCCGGAGAAGAAGACGAAAATGGCTAGAATGAAGGAGTTAACGAAAGC
AGATGATAAAACGTGCCTGTTTTACCTTGATTCATACTCGTGGGACCTTC
AACGGGCTTGTCAAGAATATTTCAGTAAATGAAACAAAGCCCAACGGCGA
AGACGTTTCCACGCCCACTTCGACCATCACGGTTGTGAAGGCTTACGAGG
ACTCCCAAGCTGCTGCCGAGAGGCTCGTCGCCCAAGAGGCCTCTCCGGTT
GTACAACCTTGCCGCCCGCTCACGATTTTGAGCTGGAAGAGAAGATGGCA
CACTACCCTACTTTGGCGTATTCGACGTTCAAAGTCGACGCAAATGGTTT
GCCTGCCGATCTGCGGGTACTACCGGAACTGGATGGTGGTCTTGGCGATT
TGAGCCTCGTCGCAGGCGACCCGGAGAAGAAGACGAAAATGGCTAGAATG
AAGGAGTTAACGAAAGCAGATGATAAAACGTGCCTGTTTTACCTTGATTC
ATACTCGTGGGACCTTCAACGGGCTTGTCAAGAATATTTCAGTAAATGAA
ACAAAGCCCAACGGCGAAGACGTTTCCACGCCCACTTCGACCATCACGGT
TGTGAAGGCTTACGAGGACTCCCAAGCTGCTGCCGAGAGGCTCGTCGCCC
AAGAGGCCTCTCCGGTTGTACAACCTTGCCGCCCGCTCACGATTTTGAGC
TGGAAGAGAAGATGGCACACTACCCTACTTTGGCGTATTCGACGTTCAAA
GTCGACGCAAATGGTTTGCCTGCCGATCTGCGGGTACTACCGGAACTGGA
TGGTGGTCTTGGCGATTTGAGCCTCGTCGCAGGCGACCCGGAGAAGAAGA
CGAAAATGGCTAGAATGAAGGAGTTAACGAAAGCAGATGATAAAACGTGC
CTGTTTTACCTTGATTCATACTCGTGGGACCTTCAACGGGCTTGTCAAGA
ATATTTCAGTAAATGAAACAAAGCCCAACGGCGAAGACGTTTCCACGCCC
ACTTCGACCATCACGGTTGTGAAGGCTTACGAGGACTCCCAAGCTGCTGC
CGAGAGGCTCGTCGCCCAAGAGGCCTCTCCGGTTGTACAACCTTGCCGCC
CGCTCACGATTTTGAGCTGGAAGAGAAGATGGCACACTACCCTACTTTGG
CGTATTCGACGTTCAAAGTCGACGCAAATGGTTTGCCTGCCGATCTGCGG
GTACTACCGGAACTGGATGGTGGTCTTGGCGATTTGAGCCTCGTCGCAGG
CGACCCGGAGAAGAAGACGAAAATGGCTAGAATGAAGGAGTTAACGAAAG
CAGATGATAAAACGTGCCTGTTTTACCTTGATTCATACTCGTGGGACCTT
CAACGGGCTTGTCAAGAATATTTCAGTAAATGAAACAAAGCCCAACGGCG
AAGACGTTTCCACGCCCACTTCGACCATCACGGTTGTGAAGGCTTACGAG
GACTCCCAAGCTGCTGCCGAGAGGCTCGTCGCCCAAGAGGCCTCTCCGGT
TGTACAACCTTGCCGCCCGCTCACGATTTTGAGCTGGAAGAGAAGATGGC
ACACTACCCTACTTTGGCGTATTCGACGTTCAAAGTCGACGCAAATGGTT
TGCCTGCCGATCTGCGGGTACTACCGGAACTGGAT
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Synonyms
Publications