EWM29254.1, cds1410 (CDS) Nannochloropsis gaditana

Overview
NameEWM29254.1
Unique Namecds1410
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:575328..575417 -
Alignment locationCM002457.1:575060..575101 -
Alignment locationCM002457.1:574876..574946 -
Alignment locationCM002457.1:574722..574770 -
Alignment locationCM002457.1:574461..574625 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29254.1
ProductUBA-like protein
Orig transcript idgnl|cribi|Naga_100029g13.9511.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:575328..575417 -
CM002457.1supercontigCM002457.1:575060..575101 -
CM002457.1supercontigCM002457.1:574876..574946 -
CM002457.1supercontigCM002457.1:574722..574770 -
CM002457.1supercontigCM002457.1:574461..574625 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR009060UBA-like
Homology
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BLAST of EWM29254.1 vs. NCBI_GenBank
Match: gi|585111777|gb|EWM29254.1| (UBA-like protein [Nannochloropsis gaditana])

HSP 1 Score: 284.263 bits (726), Expect = 4.479e-97
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 
Query:    1 MAHYPTLAYSTFKVDANGLPADLRVLPELDTTLPPAHDFELEEKVVKAYEDSQAAAERLVAQEASPVVTKPNGEDVSTPTSTITGGLGDLSLVAGDPEKKTKMARMKELTKADDKTCLFYLDSYSWDLQRACQEYFSK 138
            MAHYPTLAYSTFKVDANGLPADLRVLPELDTTLPPAHDFELEEKVVKAYEDSQAAAERLVAQEASPVVTKPNGEDVSTPTSTITGGLGDLSLVAGDPEKKTKMARMKELTKADDKTCLFYLDSYSWDLQRACQEYFSK
Sbjct:    1 MAHYPTLAYSTFKVDANGLPADLRVLPELDTTLPPAHDFELEEKVVKAYEDSQAAAERLVAQEASPVVTKPNGEDVSTPTSTITGGLGDLSLVAGDPEKKTKMARMKELTKADDKTCLFYLDSYSWDLQRACQEYFSK 138
The following BLAST results are available for this feature:
BLAST of EWM29254.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585111777|gb|EWM29254.1|4.479e-97100.00UBA-like protein [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1412rna1412Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications