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Properties
| Property Name | Value |
|---|
| Product | Protein of unknown function DUF4336 |
| Orig transcript id | gnl|cribi|Naga_100013g81.9784.mrna |
| Orig protein id | gnl|cribi|Naga_100013g81.9784 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:365272..368441 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna141 ID=rna141|Name=rna141|organism=Nannochloropsis gaditana|type=mRNA|length=426bp
ATGGTGTCAACTAATTACTCGAGTCTCAATATTGCTTCGCTCCTCCGCAT
CATCGCAATCCTCCTCCTCGTACTACATCCAAACCATGCCTGGTTCTCCA
TCTCTCGGCTTCTCAGTCGCACGGTCAAAAATGCACCAGGTCACCTTTCA
GTTCTAGGGTCTGGCTCCTCCGATATTCACCAGTCATGCACTATCACTGA
AATGTTGTGCAAGAACTGCAAAACGTACTATGATCCCTCCCGCAACCACG
AGCGCGCTTGTCGCTATCATCCGAAGCATTACTCAGGAGACACTAAACGC
AAGGCGGATTGGAGTGCTTCGGCGGATCGATTTGCCACACAAAAAATGTA
TTGGTGCTGTGGAGAAGAAGATGAGAATGCGCCTGGATGTAAGTACGACA
GGCACCGCAGTTATGACGATGAATGA back to topprotein sequence of rna141 >rna141-protein ID=rna141-protein|Name=rna141|organism=Nannochloropsis gaditana|type=polypeptide|length=387bp
MAAIIGGSWRLELHQRSRLLSFFLFVSLFLPVTVEAFTARIHGCPTMSSL
NRPKASGGSSDSRRGGTRSSFSTANAKPSSWQRPRSSSSPPFTYPIPQKN
PFPWKAAQSPPPTPTRLTPKSSLPPAVDVGARDQIYEPSLLPPRKKPTTL
LISDRKRGLWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECI
DMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVSVHPR
INVISEFLLEGPSTDAPSQLPFPLRKDLDVAVYETPLLREMVLTHKPSKT
LFVADSGFYINEEYSNSLTRGITQLQGIYDRFVTPPFFRLGMNKKEGKRL
YERVKDWGFDKIVTCHAALVEEGKGKEAFLEGYRHLA back to topmRNA from alignment at CM002455.1:365272..368441+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna141 ID=rna141|Name=rna141|organism=Nannochloropsis gaditana|type=mRNA|length=3170bp|location=Sequence derived from alignment at CM002455.1:365272..368441+ (Nannochloropsis gaditana)
AAATTTGCTCATTTTGTTACAGGcgtgcctttccccccctcaaCTTCCCG
TTCCACTTGTTGCCCGCTGCTTCCCCCGCAAGTTTCTTTTGATGCGGAGG
GCAATAGTTCCGAAGCAAAGGAGTGCGCCGATGAAACTCTGCCATGCCAA
CGGGTGTGCAAACAAAGCGCACGACAAAATCATGCTGAGCATCTGACGTA
TTGTCATCATGATGGTGAAGACGATAGCACCAAACTGCTTAATTGTGTAA
AAGATGAAAAGCTGTCCCGAGGCAGAGCAAAGGGACAGAATGAAGACATG
CTGTGCGGCATCCGGGTGCCGCATCATGAAGGCGAGTGACGAAGCGCCTT
GCCCGGTTTGCAGAAGGCTCGCGCCTGTAAAGATGATAGAGCACAGGTTG
ACCCCCAGCATCATCTGGAATTGGGACACGTGGAACTTCTTGAAGACTTT
GTCTTGCCACTGGCTTGTAAAGGAGTCGCACATGAGATACATGGCCAGAA
GGATGTATCCTAACGTGGAGTCGGCCCCGCCGTCGTGCCCGGCCTTGGGC
TTCTTCTCGTTCAGAGAGAAGATGGTGACTCCCAACGTGATCAGCGCGGC
GTCCACGTACTCAGCCCACGGATAGGACCTCCGGTGCAGCAGCCTCCCAA
CGAGCATGACGGGGATGATCTTGCTGGACTTGGACAGGAcctgggtgggg
aaggagacgtaTTTGAGGGCCTCGTATTGAGCCCAGCTGCTCAGAAtgtt
ggagagggaggcaggagcaTACTGCCACAAAGGGGCTTTCAAACCCTGGG
GTACCACCGCGTCTGTATTGGACCTATTCGACCATGGCCAGTAGACAATT
GTGGCGGAGACAACGAGGGCCAGGGCACGGTTACCGAACACCAAAAAGGC
cgacgaggggaagaattCCGCGTCAGCGCCCTCCCCGTACGCCTTGGTCA
CCATCCGCTCCTGGACCAGGCCCCAGATGATGTAAGAGGCTTGAAGGCCT
AAAAAGCAGCCCACGAGACGAATGGCTTTCGATTTCATGCTGTCGTCACC
GCTGGTGCTCCCACTCAGAAGCATCCTGGATGGAACTCCTCCAggctttt
ctttctcatccGTACTGTGGCTGCCACTGCCCGtaacgggggaggacgct
aACAATCGCTCTTTCTCAGATTCTCGCCCTGTCATACTCCCGTCTTCAAG
ACCAACGTCTTCCGAGACTTCTGTTTTCAGTTCGATTCCAGGAGTCCTCT
CGTCAGCCCTTGGAGAGAAACTGCTTCTCATGGCCGAAGACAAGGATGAA
AGCCAACCGCTTCCGGAACTTGCGCTGTTACGCACAGTTTTCCGCGTGAT
GACCGTTGTTGGTCTCGTTTTTCCTGTCCGTGCAGGTATTGATAAGgacc
aagaagaagagaaatcCGTCACGTACATTCCGTCCTACATTTGAATCGCC
AGTTCAAACAGTATGGCCTCCCTCAAGACAAAGAAGTCGACATTCACACG
CGCAAGACCTGCCGACTGTTCCAGCATGACACATCACGCGAAAAGACACA
ACAGTAAGCAGAAATGGGAGAGCTCTACCACGGCGTCTTGAATCCGCAGG
GACGGGACGTGAATGCGGCCGAGGCAGGTAGAAGCTCGGATGTAACTGAT
GCATCTCGCCAAGACGGTCCCgccatccacctccccccctaagCCCCTGC
TCTGGGAAAAAACCATTAACCTCCATTCACCAATACCCCTGCCAGCGGGT
TGTGGACAGTGGAAAACCATGTTGATTGATGCGGTGTAGTGGACTGAGTT
GTGAGTCGCTTTCAATACCTTACAGGCGCGCTTAATTTGCACATGGCCGC
AATTATCGGGGGATCGTGGCGTTTGGAGCTCCACCAGCGCAGCCGGCTCC
TGAGTTTCTTTTTATttgtttcccttttcttACCTGTTACCGTCGAAGCC
TTCACTGCACGGATCCATGGATGTCCAACGATGTCCTCCTTAAATCGACC
GAAAGCTTCTGGAGGCAGCAGTGACAGTCGGAGAGGCGGtacccgctcct
ccttctcaaccgCCAATGCCAAGCCCTCTTCTTGGCAacgtcctcgctcc
tcttcaaGCCCTCCTTTTACATACCCCATCCCGCAAAAAAACCCGTTTCC
ATGGAAAGCAGCCCagtctccccctccaacacCAACGCGCCTCACTCCCA
AATCAAGCTTGCCTCCTGCTGTAGATGTTGGTGCACGGGATCAAATCTAC
GAGCcgtccctgctccccccAAGAAAAAAACCTACCACACTACTTATTTC
GGATCGGAAGCGTGGTCTGTGGGTTTTCGAACAACCATTTGTCCTTGGTG
TCGTGGACGTGAAAAATCGGATGAGCGTCCTTCGCCTTTCAGACGGCGGT
TTCGCACTCTATTCTCCCCTGGCTGCCACACCGGAATGCATCGACATGCT
TAAAAGCCTGGTCAAAAGCGAAAAACTCTCTCTGTCTTCAGCGTGGTTCA
TGGTGCCCAGCTCCTTTCCCGAACATCACGAGTCCCTTGTGACGTGGCGG
GAGGTGTTTCCTGAGGCACGAGTCGTCTCGGTACATCCCCGGATAAATGT
CATTTCCGAGTTTCTTCTGGAAGGCCCGTCAACCGACGCCCCATCTCAAT
TACCTTTCCCGCTGCGTAAAGATTTGGACGTGGCGGTTTACGAGACGCCC
TTACTGCGGGAGATGGTCCTGACTCACAAGCCCAGCAAGACTCTTTTCGT
GGCCGACTCGGGGTTTTACATCAACGAGGAGTACTCCAATTCTCTGACAC
GCGGCATCACGCAGCTGCAAGGGATCTACGACAGGTTTgtcacccctccc
tttttccggCTGGGCATgaacaagaaggaaggaaagaggctgTACGAGCG
TGTGAAGGACTGGGGATTCGACAAGATCGTCACGTGCCacgcggccttgg
tggaggaggggaaggggaaagaggcattTTTGGAAGGCTACCGACACCTG
GCTTAATTTCTCGCTGCGTGGTGCAGATAAAATATTCAAAAGGATGCGTA
GAAGGAGCCCGTGGCAGTAGCCGCGTCGGGCGGGCCACACTTGTTTGCAA
GCCTTTCAGATAACTGTGCGAGTATCATAAAAAGCAACCAAGCATGACTG
TAACATACTCAAAGAAGGAC back to topCoding sequence (CDS) from alignment at CM002455.1:365272..368441+ >rna141 ID=rna141|Name=rna141|organism=Nannochloropsis gaditana|type=CDS|length=1164bp|location=Sequence derived from alignment at CM002455.1:365272..368441+ (Nannochloropsis gaditana)
ATGGCCGCAATTATCGGGGGATCGTGGCGTTTGGAGCTCCACCAGCGCAG
CCGGCTCCTGAGTTTCTTTTTATttgtttcccttttcttACCTGTTACCG
TCGAAGCCTTCACTGCACGGATCCATGGATGTCCAACGATGTCCTCCTTA
AATCGACCGAAAGCTTCTGGAGGCAGCAGTGACAGTCGGAGAGGCGGtac
ccgctcctccttctcaaccgCCAATGCCAAGCCCTCTTCTTGGCAacgtc
ctcgctcctcttcaaGCCCTCCTTTTACATACCCCATCCCGCAAAAAAAC
CCGTTTCCATGGAAAGCAGCCCagtctccccctccaacacCAACGCGCCT
CACTCCCAAATCAAGCTTGCCTCCTGCTGTAGATGTTGGTGCACGGGATC
AAATCTACGAGCcgtccctgctccccccAAGAAAAAAACCTACCACACTA
CTTATTTCGGATCGGAAGCGTGGTCTGTGGGTTTTCGAACAACCATTTGT
CCTTGGTGTCGTGGACGTGAAAAATCGGATGAGCGTCCTTCGCCTTTCAG
ACGGCGGTTTCGCACTCTATTCTCCCCTGGCTGCCACACCGGAATGCATC
GACATGCTTAAAAGCCTGGTCAAAAGCGAAAAACTCTCTCTGTCTTCAGC
GTGGTTCATGGTGCCCAGCTCCTTTCCCGAACATCACGAGTCCCTTGTGA
CGTGGCGGGAGGTGTTTCCTGAGGCACGAGTCGTCTCGGTACATCCCCGG
ATAAATGTCATTTCCGAGTTTCTTCTGGAAGGCCCGTCAACCGACGCCCC
ATCTCAATTACCTTTCCCGCTGCGTAAAGATTTGGACGTGGCGGTTTACG
AGACGCCCTTACTGCGGGAGATGGTCCTGACTCACAAGCCCAGCAAGACT
CTTTTCGTGGCCGACTCGGGGTTTTACATCAACGAGGAGTACTCCAATTC
TCTGACACGCGGCATCACGCAGCTGCAAGGGATCTACGACAGGTTTgtca
cccctccctttttccggCTGGGCATgaacaagaaggaaggaaagaggctg
TACGAGCGTGTGAAGGACTGGGGATTCGACAAGATCGTCACGTGCCacgc
ggccttggtggaggaggggaaggggaaagaggcattTTTGGAAGGCTACC
GACACCTGGCTTAA back to top
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